Association analysis for SNPs of KRT26 and TCHH genes with cashmere production performance, body measurement traits and milk production traits in Liaoning cashmere goats

2021 ◽  
pp. 1-11
Author(s):  
Yanan Xu ◽  
Xinjiang Zhang ◽  
Taiyu Hui ◽  
Jiaming Sun ◽  
Weidong Cai ◽  
...  
Keyword(s):  
Milk Production ◽  
Association Analysis ◽  
Production Performance ◽  
Body Measurement ◽  
Production Traits ◽  
Milk Production Traits ◽  
Body Measurement Traits ◽  
Cashmere Goats

scholarly journals Associations between polymorphisms of SLC22A7, NGFR, ARNTL and PPP2R2B genes and Milk production traits in Chinese Holstein

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Ruike Jia ◽  
Yihan Fu ◽  
Lingna Xu ◽  
Houcheng Li ◽  
Yanhua Li ◽  
...  
Keyword(s):  
Dairy Cattle ◽  
Milk Production ◽  
Association Analysis ◽  
Milk Yield ◽  
Production Traits ◽  
Milk Production Traits ◽  
Fat Percentage ◽  
Protein Percentage ◽  
Fat Yield ◽  
Percentage Protein

Abstract Background Our preliminary work confirmed that, SLC22A7 (solute carrier family 22 member 7), NGFR (nerve growth factor receptor), ARNTL (aryl hydrocarbon receptor nuclear translocator like) and PPP2R2B (protein phosphatase 2 regulatory subunit Bβ) genes were differentially expressed in dairy cows during different stages of lactation, and involved in the lipid metabolism through insulin, PI3K-Akt, MAPK, AMPK, mTOR, and PPAR signaling pathways, so we considered these four genes as the candidates affecting milk production traits. In this study, we detected polymorphisms of the four genes and verified their genetic effects on milk yield and composition traits in a Chinese Holstein cow population. Results By resequencing the whole coding region and part of the flanking region of SLC22A7, NGFR, ARNTL and PPP2R2B, we totally found 20 SNPs, of which five were located in SLC22A7, eight in NGFR, three in ARNTL, and four in PPP2R2B. Using Haploview4.2, we found three haplotype blocks including five SNPs in SLC22A7, eight in NGFR and three in ARNTL. Single-SNP association analysis showed that 19 out of 20 SNPs were significantly associated with at least one of milk yield, fat yield, fat percentage, protein yield or protein percentage in the first and second lactations (P < 0.05). Haplotype-based association analysis showed that the three haplotypes were significantly associated with at least one of milk yield, fat yield, fat percentage, protein yield or protein percentage (P < 0.05). Further, we used SOPMA software to predict a SNP, 19:g.37095131C > T in NGFR, changed the structure of NGFR protein. In addition, we used Jaspar software to found that four SNPs, 19:g.37113872C > G,19:g.37113157C > T, and 19:g.37112276C > T in NGFR and 15:g.39320936A > G in ARNTL, could change the transcription factor binding sites and might affect the expression of the corresponding genes. These five SNPs might be the potential functional mutations for milk production traits in dairy cattle. Conclusions In summary, we proved that SLC22A7, NGFR, ARNTL and PPP2R2B have significant genetic effects on milk production traits. The valuable SNPs can be used as candidate genetic markers for genomic selection of dairy cattle, and the effects of these SNPs on other traits need to be further verified.

scholarly journals The Uterine Milk Protein (UTMP) gene is associated with milk production traits in Iranian Holstein bulls

Genetika ◽  
2017 ◽  
Vol 49 (3) ◽  
pp. 969-977
Author(s):  
Ahad Yousefi ◽  
Abdolreza Salehi ◽  
Mehdi Aminafshar ◽  
Sayyadnejad Bagher
Keyword(s):  
Milk Production ◽  
Milk Fat ◽  
Milk Protein ◽  
Growth Control ◽  
Production Performance ◽  
Protein Yield ◽  
Production Traits ◽  
Milk Production Traits ◽  
Protease Inhibition ◽  
Holstein Bulls

Uterine Milk Protein (UTMP) the member of Serine Protease Inhibitor superfamily secreted from uterine endometrium during pregnancy under influence of progesterone. Specific functions of UTMP include protease inhibition, growth control, and direct nutrition of the conceptus. This investigation was performed in order to study polymorphism of UTMP gene and its association with milk production traits in Iranian Holstein bulls. Genomic DNA was extracted from 100 semen samples of proven bulls. In order to amplify 568bp-fragment including same part of intron 3, whole exon 4 and downstream of UTMP gene, a pair of primer was designed. PCR products were digested with BsrI enzyme. The allele frequencies of a, b and c were 0.135, 0.69 and 0.175, respectively in studied population. Four genotypes AB, BB, BC and CC were observed with frequencies of 0.27, 0.49, 0.13 and 0.11, respectively. Genotypes AA and AC were not observed in this study. The chi-square (X2) test revealed deviation from Hardy-Weinberg equilibrium. Data were obtained from animal breeding centre of Iran for the first lactation during 1993-2008 to estimate some genetic parameters. Heritability of milk yield, fat yield, protein yield, fat percent and protein percent were 0.28, 0.21, 0.22, 0.32 and 0.34 respectively. Results indicated significant association between UTMP Genotypes and milk, fat and protein yield traits. Meanwhile, Bulls with CC Genotype had higher milk, fat and protein yield compared to other genotypes (p<0.05). These results suggested UTMP as a candidate gene influencing milk production traits might be implemented in breeding programs to improve the production performance of Iranian Holstein cattle.

scholarly journals Exploring the relationship between polymorphisms of leptin and IGF-1 genes with milk yield in indicine and taurine crossbred cows

2019 ◽  
Author(s):  
Mohammad Rayees Dar ◽  
Mahendra Singh ◽  
Sunita Thakur ◽  
Archana Verma
Keyword(s):  
Milk Production ◽  
Milk Yield ◽  
Production Performance ◽  
Yield Traits ◽  
The Novel ◽  
Production Traits ◽  
Milk Production Traits ◽  
The Relationship ◽  
Karan Fries ◽  
Apparently Healthy

ABSTRACTLeptin and IGF-1 plays a significant role in milk production and lactation in bovines. The present investigation was carried out to identify the novel polymorphisms in exon 3 region of leptin gene and exon 3 + partial intron 3 of IGF-1 gene and to analyze their association with the milk production performance in indicine and taurine crossbred (Karan Fries) cows. Blood samples were collected from 160 apparently healthy Karan Fries cows. Four SNPs at positions rs29004508 (C>T), rs29004509 (C>T), rs29004510 (T>C), rs29004511 (T>C) in Leptin gene and two SNPs at positions rs133251968 (C>A), rs137289661(C>T) in IGF-1 gene were found in Karan Fries cows, however rs29004509 (C>T) had positive correlation (p<0.05) with milk yield. The genetic variants observed in exon 3 region of leptin gene and their association with milk yield traits revealed the importance of CT genotype, which had been useful for genetic improvement of Karan Fries cow for milk production traits and can also be utilized as a potential genetic marker to select appropriate animals.

Buffalo SREBP1 : molecular cloning, expression and association analysis with milk production traits

2017 ◽  
Vol 48 (6) ◽  
pp. 720-721 ◽  
Author(s):  
Tingxian Deng ◽  
Chunying Pang ◽  
Xiaoya Ma ◽  
Anqin Duan ◽  
Shasha Liang ◽  
...  
Keyword(s):  
Molecular Cloning ◽  
Milk Production ◽  
Association Analysis ◽  
Production Traits ◽  
Milk Production Traits

Effect of Breed and Some Non - Genetic Factors on Milk Production and Some Proportions of Its Chemical Components in Two Breeds of Local Sheep

2020 ◽  
Vol 10 (1) ◽  
pp. 227-231
Author(s):  
Rahman Hussein AL-Qasimi ◽  
Shatha Mohammed Abbas ◽  
Allawi L.D. AL-Khauzai
Keyword(s):  
Milk Production ◽  
Genetic Factors ◽  
Chemical Components ◽  
Lactation Period ◽  
Production Traits ◽  
Milk Production Traits ◽  
Fat Percentage ◽  
Awassi Sheep ◽  
Total Milk ◽  
Milk Components

The study was carried out on 19 ewes of local Awassi sheep and 12ewes local Arabi sheep in the Al-kafeel sheep station Karbala, to determine the effect of breed and some non-genetic factors such as (sex of the lamb, type of birth, age and weight of ewes at birth) on daily and total milk production and lactation period and some of milk components (fat, protein and lactose). The results showed that a significant effect (P <0.05) of the breed on milk production traits where Awassi sheep recorded the highest mean (0.91 kg , 101.63 kg , 104.86 day) compared to the Arabi sheep she was means (0.77 kg , 88.15 kg , 99.15 day) respectively. As well as in proportions of milk components with mean( 5.1 , 4.90 , 5.51) % respectively compared to the Arabi sheep (4.70 . 4.20 . 4.89) ewes with male lambs also exceeded superior ewes with female lambs in daily and total milk production and the lactation period the sex of the lamb did not affect the proportions of milk components the weight of the ewes had a significant effect (P <0.05) in milk production attributes with superior weight of ewes on lower ewes and did not affect the proportions of milk ingredients except for lactose. The type of birth and the age of the ewes did not have a significant effect in all the studied traits except for the superiority (P<0.05) of young ewes on age ewes in the fat percentage of milk.

An association analysis between PRL genotype and milk production traits in Italian Mediterranean river buffalo

2017 ◽  
Vol 84 (4) ◽  
pp. 430-433 ◽  
Author(s):  
Jun Li ◽  
Aixin Liang ◽  
Zipeng Li ◽  
Chao Du ◽  
Guohua Hua ◽  
...  
Keyword(s):  
Milk Production ◽  
Milk Yield ◽  
Milk Fat ◽  
Fat Content ◽  
Phenotypic Variance ◽  
River Buffalo ◽  
Production Traits ◽  
Milk Production Traits ◽  
Exon 2 ◽  
Mediterranean River

This Research Communication describes the association between genetic variation within the prolactin (PRL) gene and the milk production traits of Italian Mediterranean river buffalo (Bufala mediterranea Italiana). High resolution melting (HRM) techniques were developed for genotyping 465 buffaloes. The association of genetic polymorphism with milk production traits was performed and subsequently the effects of parity and calving season were evaluated. Single nucleotide polymorphisms (SNPs) were identified at exons 2 and 5 and at introns 1 and 2. All the SNPs were in Hardy–Weinberg equilibrium, and statistical analysis showed that the polymorphism of intron1 was significantly (P < 0·05) associated with milk yield, milk protein content and peak milk yield. The average contribution of the intron1 genotype (r2intron1) to total phenotypic variance in milk production traits was 0·09, and the TT genotype showed lower values than CC and CT genotypes. A nonsynonymous SNP was identified in exon 2, which resulted in an amino acid change from arginine to cysteine. Moreover, the polymorphism of exon 2 was associated significantly with milk fat content (P < 0·05), and the buffaloes with TT genotype showed higher total fat content than the buffaloes with CT genotype. These findings provide evidence that polymorphisms of the buffalo PRL gene are associated with milk production traits and PRL can be used as a candidate gene for marker-assisted selection in Italian Mediterranean river buffalo breeding.

Factors influencing milk osteopontin concentration based on measurements from Danish Holstein cows

2021 ◽  
pp. 1-6
Author(s):  
Brian Christensen ◽  
Elias D. Zachariae ◽  
Nina A. Poulsen ◽  
Albert J. Buitenhuis ◽  
Lotte B. Larsen ◽  
...  
Keyword(s):  
Milk Production ◽  
Bovine Milk ◽  
Farm Management ◽  
Holstein Cows ◽  
Enzyme Linked Immunosorbent Assay ◽  
Production Traits ◽  
Milk Production Traits ◽  
Factors Influencing ◽  
Significant Interest ◽  
Variation Explained

Abstract Our objective was to determine the content of the bioactive protein osteopontin (OPN) in bovine milk and identify factors influencing its concentration. OPN is expressed in many tissues and body fluids, with by far the highest concentrations in milk. OPN plays a role in immunological and developmental processes and it has been associated with several milk production traits and lactation persistency in cows. In the present study, we report the development of an enzyme linked immunosorbent assay (ELISA) for measurement of OPN in bovine milk. The method was used to determine the concentration of OPN in milk from 661 individual Danish Holstein cows. The median OPN level was determined to 21.9 mg/l with a pronounced level of individual variation ranging from 0.4 mg/l to 67.8 mg/l. Breeding for increased OPN in cow's milk is of significant interest, however, the heritability of OPN in milk was found to be relatively low, with an estimated value of 0.19 in the current dataset. The variation explained by the herd was also found to be low suggesting that OPN levels are not affected by farm management or feeding. Interestingly, the concentration of OPN was found to increase with days in milk and to decrease with parity.

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