scholarly journals Multicellularity and sex helped shape the Tree of Life

2021 ◽  
Vol 288 (1955) ◽  
pp. 20211265
Author(s):  
Lian Chen ◽  
John J. Wiens
Keyword(s):  
Species Richness ◽  
Sexual Reproduction ◽  
Tree Of Life ◽  
Diversification Rates ◽  
Species Numbers

Across the Tree of Life, there are dramatic differences in species numbers among groups. However, the factors that explain the differences among the deepest branches have remained unknown. We tested whether multicellularity and sexual reproduction might explain these patterns, since the most species-rich groups share these traits. We found that groups with multicellularity and sexual reproduction have accelerated rates of species proliferation (diversification), and that multicellularity has a stronger effect than sexual reproduction. Patterns of species richness among clades are then strongly related to these differences in diversification rates. Taken together, these results help explain patterns of biodiversity among groups of organisms at the very broadest scales. They may also help explain the mysterious preponderance of sexual reproduction among species (the ‘paradox of sex’) by showing that organisms with sexual reproduction proliferate more rapidly.

scholarly journals Diversification rates and species richness across the Tree of Life

2016 ◽  
Vol 283 (1838) ◽  
pp. 20161334 ◽  
Author(s):  
Joshua P. Scholl ◽  
John J. Wiens
Keyword(s):  
Species Richness ◽  
Positive Relationship ◽  
Tree Of Life ◽  
Diversification Rate ◽  
Substantial Variation ◽  
Diversification Rates ◽  
Higher Taxa ◽  
Over Time

Species richness varies dramatically among clades across the Tree of Life, by over a million-fold in some cases (e.g. placozoans versus arthropods). Two major explanations for differences in richness among clades are the clade-age hypothesis (i.e. species-rich clades are older) and the diversification-rate hypothesis (i.e. species-rich clades diversify more rapidly, where diversification rate is the net balance of speciation and extinction over time). Here, we examine patterns of variation in diversification rates across the Tree of Life. We address how rates vary across higher taxa, whether rates within higher taxa are related to the subclades within them, and how diversification rates of clades are related to their species richness. We find substantial variation in diversification rates, with rates in plants nearly twice as high as in animals, and rates in some eukaryotes approximately 10-fold faster than prokaryotes. Rates for each kingdom-level clade are then significantly related to the subclades within them. Although caution is needed when interpreting relationships between diversification rates and richness, a positive relationship between the two is not inevitable. We find that variation in diversification rates seems to explain most variation in richness among clades across the Tree of Life, in contrast to the conclusions of previous studies.

scholarly journals Polyploidy increases overall diversity despite higher turnover than diploids in the Brassicaceae

2019 ◽  
Author(s):  
Cristian Román-Palacios ◽  
Y. Franchesco Molina-Henao ◽  
Michael S. Barker
Keyword(s):  
Species Richness ◽  
Chromosome Numbers ◽  
Long Term Evolution ◽  
Tree Of Life ◽  
Evolutionary Significance ◽  
Diversification Rates ◽  
Diversity Patterns ◽  
Term Evolution ◽  
Speciation Rates

AbstractAlthough polyploidy, or whole-genome duplication, is widespread across the Plant Tree of Life, its long-term evolutionary significance is still poorly understood. Here we examine the effects of polyploidy in driving macroevolutionary patterns within the angiosperm family Brassicaceae, a speciose clade exhibiting extensive inter-specific variation in chromosome numbers. We inferred ploidal levels from haploid chromosome numbers for 80% of species in the most comprehensive species-level chronogram for the Brassicaceae published to date. After evaluating a total of 54 phylogenetic models of diversification, we found that ploidy drives diversification rates across the Brassicaceae, with polyploids experiencing faster rates of speciation and extinction, but relatively slower rates of diversification. Nevertheless, diversification rates are, on average, positive for both polyploids and diploids. We also found that despite diversifying significantly slower than diploids, polyploids have played a significant role in driving present-day differences in species richness among clades. Overall, although most polyploids go extinct before sustainable populations are established, rare successful polyploids persist and significantly contribute to the long-term evolution of lineages. Our findings suggest that polyploidy has played a major role in shaping the long-term evolution of the Brassicaceae and highlight the importance of polyploidy in shaping present-day diversity patterns across the plant Tree of Life.Significance statementAlthough polyploidy is a source of innovation, its long-term evolutionary significance is still debated. Here we analyze the evolutionary role of polyploidy within the Brassicaceae, a diverse clade exhibiting extensive variation in chromosome numbers among species. We found that, although polyploids diversify slower than diploids, polyploids have faster extinction and speciation rates. Our results also suggest that polyploidy has played an important role in shaping present-day differences in species richness within the Brassicaceae, with potential implications in explaining diversity patterns across the plant Tree of Life.

scholarly journals Explaining large-scale patterns of vertebrate diversity

2015 ◽  
Vol 11 (7) ◽  
pp. 20150506 ◽  
Author(s):  
John J. Wiens
Keyword(s):  
Species Richness ◽  
Large Scale ◽  
Comparative Methods ◽  
Phylogenetic Comparative Methods ◽  
Metabolic Rates ◽  
Diversification Rates ◽  
Richness Patterns ◽  
Current Species

The major clades of vertebrates differ dramatically in their current species richness, from 2 to more than 32 000 species each, but the causes of this variation remain poorly understood. For example, a previous study noted that vertebrate clades differ in their diversification rates, but did not explain why they differ. Using a time-calibrated phylogeny and phylogenetic comparative methods, I show that most variation in diversification rates among 12 major vertebrate clades has a simple ecological explanation: predominantly terrestrial clades (i.e. birds, mammals, and lizards and snakes) have higher net diversification rates than predominantly aquatic clades (i.e. amphibians, crocodilians, turtles and all fish clades). These differences in diversification rates are then strongly related to patterns of species richness. Habitat may be more important than other potential explanations for richness patterns in vertebrates (such as climate and metabolic rates) and may also help explain patterns of species richness in many other groups of organisms.

scholarly journals Birds of the family Motacillidae in Omsk and in the Omsk province: species richness, numbers and distribution

2021 ◽  
pp. 110-118
Author(s):  
O. A. Odintsev ◽  
◽  
A. A. Odintseva ◽  
Keyword(s):  
Species Richness ◽  
Duration Of Stay ◽  
Species Numbers ◽  
The Family

The materials of year-round bird counts conducted by the authors in Omsk from September 2006 to Au-gust 2009 in nine habitats, as well as on the territory of four municipal districts of the Omsk Province from June 1 to August 10, 2020 have been analyzed. The species richness was studied, the analysis of the species numbers and distribution was carried out, and the abundance of Motacillidae on the territory of the studied administrative districts is indicated. Species sketches are given, in the compilation of which special attention is paid to the nature and duration of stay, as well as the distribution of birds by habitat. It was found that the encountered representatives of this family inhabit all studied biotopes, but some spe-cies are not evenly distributed.

scholarly journals Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles

2010 ◽  
Vol 277 (1700) ◽  
pp. 3587-3592 ◽  
Author(s):  
Soo Hyung Eo ◽  
J. Andrew DeWoody
Keyword(s):  
Species Richness ◽  
Nuclear Data ◽  
Synonymous Substitution ◽  
Evolutionary Rates ◽  
Rate Variation ◽  
Substitution Rates ◽  
Diversification Rates ◽  
Extinction Process ◽  
Molecular Evolutionary Rates ◽  
Speciation Rates

Rates of biological diversification should ultimately correspond to rates of genome evolution. Recent studies have compared diversification rates with phylogenetic branch lengths, but incomplete phylogenies hamper such analyses for many taxa. Herein, we use pairwise comparisons of confamilial sauropsid (bird and reptile) mitochondrial DNA (mtDNA) genome sequences to estimate substitution rates. These molecular evolutionary rates are considered in light of the age and species richness of each taxonomic family, using a random-walk speciation–extinction process to estimate rates of diversification. We find the molecular clock ticks at disparate rates in different families and at different genes. For example, evolutionary rates are relatively fast in snakes and lizards, intermediate in crocodilians and slow in turtles and birds. There was also rate variation across genes, where non-synonymous substitution rates were fastest at ATP8 and slowest at CO 3. Family-by-gene interactions were significant, indicating that local clocks vary substantially among sauropsids. Most importantly, we find evidence that mitochondrial genome evolutionary rates are positively correlated with speciation rates and with contemporary species richness. Nuclear sequences are poorly represented among reptiles, but the correlation between rates of molecular evolution and species diversification also extends to 18 avian nuclear genes we tested. Thus, the nuclear data buttress our mtDNA findings.

scholarly journals The Dynamics of Bird Diversity in the New World

2020 ◽  
Vol 69 (6) ◽  
pp. 1180-1199 ◽  
Author(s):  
Antonin Machac
Keyword(s):  
Species Richness ◽  
New World ◽  
Dominant Role ◽  
Bird Diversity ◽  
Biodiversity Hotspots ◽  
Relative Importance ◽  
Diversification Rates ◽  
The Andes ◽  
The Rich ◽  
Over Time

Abstract Three prominent explanations have been proposed to explain the dramatic differences in species richness across regions and elevations, (i) time for speciation, (ii) diversification rates, and (iii) ecological limits. But the relative importance of these explanations and, especially, their interplay and possible synthesis remain largely elusive. Integrating diversification analyses, null models, and geographic information systems, I study avian richness across regions and elevations of the New World. My results reveal that even though the three explanations are differentially important (with ecological limits playing the dominant role), each contributes uniquely to the formation of richness gradients. Further, my results reveal the likely interplay between the explanations. They indicate that ecological limits hinder the diversification process, such that the accumulation of species within a region gradually slows down over time. Yet, it does not seem to converge toward a hard ceiling on regional richness. Instead, species-rich regions show suppressed, but continued, diversification, coupled with signatures of possible competition (esp. Neotropical lowlands). Conversely, species-poor, newly-colonized regions show fast diversification and weak to no signs of competition (esp. Nearctic highlands). These results held across five families of birds, across grid cells, biomes, and elevations. Together, my findings begin to illuminate the rich, yet highly consistent, interplay of the mechanisms that together shape richness gradients in the New World, including the most species-rich biodiversity hotspots on the planet, the Andes and the Amazon. [Biogeography; community; competition; macroevolution; phylogenetics; richness gradient.]

scholarly journals Accelerated diversification correlated with functional traits shapes extant diversity of the early divergent angiosperm family Annonaceae

2019 ◽  
Author(s):  
B. Xue ◽  
X. Guo ◽  
J.B. Landis ◽  
M. Sun ◽  
C.C. Tang ◽  
...  
Keyword(s):  
Species Richness ◽  
Method Of Moments ◽  
Pollen Dispersal ◽  
Sex Expression ◽  
Diversification Rates ◽  
Total Species Richness ◽  
Dispersal Unit ◽  
High Species Richness ◽  
Selected Traits ◽  
Method Of Moments Estimator

BackgroundA major goal of phylogenetic systematics is to understand both the patterns of diversification and the processes by which these patterns are formed. Few studies have focused on the ancient, species-rich Magnoliales clade and its diversification pattern. Within Magnoliales, the pantropically distributed Annonaceae are by far the most genus-rich and species-rich family-level clade, with c. 110 genera and c. 2,400 species. We investigated the diversification patterns across Annonaceae and identified traits that show varied associations with diversification rates using a time-calibrated phylogeny of 835 species (34.6% sampling) and 11,211 aligned bases from eight regions of the plastid genome (rbcL, matK, ndhF, psbA-trnH, trnL-F, atpB-rbcL, trnS-G, and ycf1). Two hypotheses that might explain patterns of diversification—the ‘museum model’ and heterogeneous diversification rates—are also evaluated.ResultsTwelve rate shifts were identified using BAMM: in Annona, Artabotrys, Asimina, Drepananthus, Duguetia, Goniothalamus, Guatteria, Uvaria, Xylopia, the tribes Miliuseae and Malmeeae, and the Desmos-Dasymaschalon-Friesodielsia-Monanthotaxis clade (which collectively account for over 80% of the total species richness in the family). TurboMEDUSA and method-of-moments estimator analyses showed largely congruent results. A positive relationship between species richness and diversification rate is revealed using PGLS. We further explore the possible role of selected traits (habit, pollinator trapping, floral sex expression, pollen dispersal unit, anther septation, and seed dispersal unit) in shaping diversification patterns, based on inferences of BiSSE, MuSSE, HiSSE, and FiSSE analyses. Our results suggest that the liana habit, the presence of circadian pollinator trapping, androdioecy, and the dispersal of seeds as single-seeded monocarp fragments are closely correlated with higher diversification rates; pollen aggregation and anther septation, in contrast, are associated with lower diversification rates.ConclusionOur results show that the high species richness in Annonaceae is likely the result of recent increased diversification rather than the steady accumulation of species via the ‘museum model’. BAMM, turboMEDUSA, and the method-of-moments estimator all indicate heterogeneity in diversification rates across the phylogeny, with different traits associated with shifts in diversification rates in different Annonaceae clades.

scholarly journals Sexual selection in females across the animal tree of life

2021 ◽  
Author(s):  
Salom&eacute Fromonteil ◽  
Lennart Winkler ◽  
Lucas Marie-Orleach ◽  
Tim Janicke
Keyword(s):  
Sex Differences ◽  
Sexual Selection ◽  
Sexual Reproduction ◽  
Tree Of Life ◽  
Selection Theory ◽  
Sexual Selection Theory ◽  
Males And Females

The pioneers of sexual selection theory proposed that males are generally "eager" whereas females are rather "coy" with respect to mating. This male-centred perspective on sexual selection continues to permeate our perception of sex differences across disciplines. Despite an increased awareness that females also compete for mating partners, we still tend to consider sexual selection in females a rare peculiarity. Here we present meta-analytic evidence from 72 species across a broad range of animal taxa to show that sexual selection in females is widespread and should be considered the norm rather than the exception. Thereby, our results extend our general understanding of sexual reproduction and may contribute to a more balanced perspective of how sexual selection operates in both males and females.

scholarly journals Ecological Specialization and Diversification in Birds

2020 ◽  
Author(s):  
Nicholas M. A. Crouch ◽  
Robert E. Ricklefs ◽  
Boris Igić
Keyword(s):  
Species Richness ◽  
Ecological Specialization ◽  
Diversification Rates ◽  
Speciation Rate ◽  
Extinction Rates ◽  
Allopatric Species ◽  
Species Formation ◽  
Geographic Distributions ◽  
Local Ecology ◽  
Lineage Diversification

AbstractEcological specialization is widely thought to influence patterns of species richness by affecting rates at which species multiply and perish. Quantifying specialization is challenging, and using only one or a small number of ecological axes could bias estimates of overall specialization. Here, we calculate an index of specialization, based on seven measured traits, and estimate its effect on speciation and extinction rates in a large clade of birds. We find that speciation rate is independent of specialization, suggesting independence of local ecology and the geographic distributions of populations that promote allopatric species formation. Although some analyses suggest that more specialized species have higher extinction rates, leading to negative net diversification, this relationship is not consistently identified across our analyses. Our results suggest that specialization may drive diversification dynamics only on local scales or in specific clades, but is not generally responsible for macroevolutionary disparity in lineage diversification rates.

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