Mapping Main-effect and Epistatic QTL for Hard Seededness in Soybean

2018 ◽  
Vol 44 (6) ◽  
pp. 852 ◽  
Author(s):  
Li-Juan AI ◽  
Qiang CHEN ◽  
Chun-Yan YANG ◽  
Long YAN ◽  
Feng-Min WANG ◽  
...  
Keyword(s):  
Epistatic Qtl ◽  
Main Effect

Detection of main-effect and epistatic QTL for yield-related traits in rice under drought stress and normal conditions

2014 ◽  
Vol 94 (4) ◽  
pp. 633-641 ◽  
Author(s):  
Wang Xing ◽  
Hongwei Zhao ◽  
Detang Zou
Keyword(s):  
Drought Stress ◽  
Crop Yields ◽  
Upland Rice ◽  
Recombinant Inbred Lines ◽  
Stress Conditions ◽  
Epistatic Qtls ◽  
Epistatic Qtl ◽  
Main Effect ◽  
Drought Resistant ◽  
Main Effect Qtls

Xing, W., Zhao, H. and Zou, D. 2014. Detection of main-effect and epistatic QTL for yield-related traits in rice under drought stress and normal conditions. Can. J. Plant Sci. 94: 633–641. Drought-resistant cultivars play an important role in maintaining high and stable crop yields under drought-stress conditions. However, the genetic mechanism of drought resistance must first be elucidated. Therefore, 220 recombinant inbred lines from a cross between Xiaobaijingzi (upland rice) and Kongyu 131 (Oryza sativa L.) were used to identify quantitative trait loci (QTLs) for yield and yield-component traits under drought stress and control conditions in Heilongjiang and Tieli. As a result, 23 main-effect QTLs and 11 digenic interactions were detected for four traits under the above two conditions. Of the main-effect QTLs, 10 and 8 were detected under control and drought-stress conditions, respectively; and five common QTLs were observed. In addition, five QTLs were found to be responsible for the difference across the two conditions. Among all epistatic QTLs, three types of epistatic QTLs were observed: one was between two main-effect QTLs, such as qPH-3-1 and qPH-7-2; one was between one locus with and another without main-effect, e.g., qPN-4 and qPN-3-2; and one was between two loci without main-effect, e.g., qYP-6-1 and qYP-12-2. In the above epistatic examples, their recombinant genotypes tended to reduce plant height and the number of grains per panicle and increase yield, respectively. Our results provide a good foundation for designed molecular breeding of drought-resistant rice.

Overdominant Epistatic Loci Are the Primary Genetic Basis of Inbreeding Depression and Heterosis in Rice. I. Biomass and Grain Yield

Genetics ◽  
2001 ◽  
Vol 158 (4) ◽  
pp. 1737-1753 ◽  
Author(s):  
Zhi-Kang Li ◽  
L J Luo ◽  
H W Mei ◽  
D L Wang ◽  
Q Y Shu ◽  
...  
Keyword(s):  
Grain Yield ◽  
Inbreeding Depression ◽  
Genetic Basis ◽  
Mixed Model ◽  
Recombinant Inbred Lines ◽  
Hybrid Breakdown ◽  
Mixed Model Approach ◽  
Epistatic Qtl ◽  
Main Effect ◽  
Mapping Populations

AbstractTo understand the genetic basis of inbreeding depression and heterosis in rice, main-effect and epistatic QTL associated with inbreeding depression and heterosis for grain yield and biomass in five related rice mapping populations were investigated using a complete RFLP linkage map of 182 markers, replicated phenotyping experiments, and the mixed model approach. The mapping populations included 254 F10 recombinant inbred lines derived from a cross between Lemont (japonica) and Teqing (indica) and two BC and two testcross hybrid populations derived from crosses between the RILs and their parents plus two testers (Zhong 413 and IR64). For both BY and GY, there was significant inbreeding depression detected in the RI population and a high level of heterosis in each of the BC and testcross hybrid populations. The mean performance of the BC or testcross hybrids was largely determined by their heterosis measurements. The hybrid breakdown (part of inbreeding depression) values of individual RILs were negatively associated with the heterosis measurements of their BC or testcross hybrids, indicating the partial genetic overlap of genes causing hybrid breakdown and heterosis in rice. A large number of epistatic QTL pairs and a few main-effect QTL were identified, which were responsible for >65% of the phenotypic variation of BY and GY in each of the populations with the former explaining a much greater portion of the variation. Two conclusions concerning the loci associated with inbreeding depression and heterosis in rice were reached from our results. First, most QTL associated with inbreeding depression and heterosis in rice appeared to be involved in epistasis. Second, most (~90%) QTL contributing to heterosis appeared to be overdominant. These observations tend to implicate epistasis and overdominance, rather than dominance, as the major genetic basis of heterosis in rice. The implications of our results in rice evolution and improvement are discussed.

scholarly journals Main Effect and Epistatic QTL Affecting Spike Shattering and Association with Plant Height Revealed in Two Spring Wheat (Triticum aestivum L.) Populations

2021 ◽  
Author(s):  
Firdissa Bokore ◽  
Richard D. Cuthbert ◽  
Ron E. Knox ◽  
Heather L. Campbell ◽  
Brad Meyer ◽  
...  
Keyword(s):  
Plant Height ◽  
Triticum Aestivum L ◽  
Wheat Breeding ◽  
Snp Markers ◽  
Epistatic Qtl ◽  
Main Effect ◽  
Wheat Development ◽  
Positive Correlations ◽  
Relationship Of ◽  
The Relationship

Abstract Spike shattering can cause severe grain yield loss in wheat. Development of cultivars with reduced shattering but having easy threshability is the target of wheat breeding programs. This study was conducted to determine quantitative trait loci (QTL) associated with shattering resistance, and epistasis among QTL in the Carberry/AC Cadillac and Carberry/Thatcher populations. Response of the populations to spike shattering was evaluated near Swift Current, SK, in four to five environments. Plant height data recorded in different locations and years was used to determine the relationship of the trait with spike shattering. Each population was genotyped and mapped with the wheat 90K Illumina iSelect SNP markers. Main effect QTL were analyzed by MapQTL 6 and epistatic interactions between main effect QTL were determined by QTLNetwork 2.0. Positive correlations were observed both within trait location-year combinations as well as between trait location-year combinations. Carberry contributed two major QTL associated with spike shattering on chromosome arms 4BS and 5AL, detected in both populations. Carberry also contributed two minor QTL on 7AS and 7AL. AC Cadillac contributed five minor QTL on 1AL, 2DL, 3AL, 3DL and 7DS. Nine epistatic QTL interactions were identified, out of which the most consistent and synergistic interaction, that reduced the expression of shattering, occurred between 4BS and 5AL QTL. The 4BS QTL was consistently associated with reduced shattering and reduced plant height in the coupling phase. The present findings shed light on the inheritance of shattering resistance and provide genetic markers for manipulating the trait to develop wheat cultivars.

Quantifying the Effects of Background Speech Babble on Preschool Children's Novel Word Learning in a Multisession Paradigm: A Preliminary Study

2020 ◽  
Vol 63 (1) ◽  
pp. 345-356
Author(s):  
Meital Avivi-Reich ◽  
Megan Y. Roberts ◽  
Tina M. Grieco-Calub
Keyword(s):  
Word Learning ◽  
Signal To Noise Ratio ◽  
Preschool Age ◽  
Exposure Condition ◽  
Signal To Noise ◽  
Verbal Recall ◽  
Referent Selection ◽  
Main Effect ◽  
Noise Ratio ◽  
Novel Word Learning

Purpose This study tested the effects of background speech babble on novel word learning in preschool children with a multisession paradigm. Method Eight 3-year-old children were exposed to a total of 8 novel word–object pairs across 2 story books presented digitally. Each story contained 4 novel consonant–vowel–consonant nonwords. Children were exposed to both stories, one in quiet and one in the presence of 4-talker babble presented at 0-dB signal-to-noise ratio. After each story, children's learning was tested with a referent selection task and a verbal recall (naming) task. Children were exposed to and tested on the novel word–object pairs on 5 separate days within a 2-week span. Results A significant main effect of session was found for both referent selection and verbal recall. There was also a significant main effect of exposure condition on referent selection performance, with more referents correctly selected for word–object pairs that were presented in quiet compared to pairs presented in speech babble. Finally, children's verbal recall of novel words was statistically better than baseline performance (i.e., 0%) on Sessions 3–5 for words exposed in quiet, but only on Session 5 for words exposed in speech babble. Conclusions These findings suggest that background speech babble at 0-dB signal-to-noise ratio disrupts novel word learning in preschool-age children. As a result, children may need more time and more exposures of a novel word before they can recognize or verbally recall it.

The Effects of a Caffeine Placebo and Experimenter Expectation on Blood Pressure, Heart Rate, Well-Being, and Cognitive Performance

2001 ◽  
Vol 6 (1) ◽  
pp. 15-25 ◽  
Author(s):  
Harald Walach ◽  
Stefan Schmidt ◽  
Yvonne-Michelle Bihr ◽  
Susanne Wiesch
Keyword(s):  
Blood Pressure ◽  
Heart Rate ◽  
Cognitive Task ◽  
Well Being ◽  
Control Group ◽  
Double Blind ◽  
Main Effect ◽  
The Difference ◽  
Being There ◽  
To Receive

We studied the effect of experimenter expectations and different instructions in a balanced placebo design. 157 subjects were randomized into a 2 × 4 factorial design. Two experimenters were led to expect placebos either to produce physiological effects or not (pro- vs. antiplacebo). All subjects except a control group received a caffeine placebo. They were either made to expect coffee, no coffee, or were in a double-blind condition. Dependent measures were blood pressure, heart rate, well-being, and a cognitive task. There was one main effect on the instruction factor (p = 0.03) with the group “told no caffeine” reporting significantly better well-being. There was one main effect on the experimenter factor with subjects instructed by experimenter “proplacebo” having higher systolic blood pressure (p = 0.008). There was one interaction with subjects instructed by experimenter “proplacebo” to receive coffee doing worse in the cognitive task than the rest. Subjects instructed by experimenter “antiplacebo” were significantly less likely to believe the experimental instruction, and that mostly if they had been instructed to receive coffee. Contrary to the literature we could not show an effect of instruction, but there was an effect of experimenters. It is likely, however, that these experimenter effects were not due to experimental manipulations, but to the difference in personalities.

The Cortisol Response to Normal and Nocturnal Awakening

2000 ◽  
Vol 14 (1) ◽  
pp. 24-28 ◽  
Author(s):  
F. Hucklebridge ◽  
A. Clow ◽  
H. Rahman ◽  
P. Evans
Keyword(s):  
Area Under The Curve ◽  
Secretory Activity ◽  
Linear Increase ◽  
Cortisol Response ◽  
The Awakening ◽  
Basal Cortisol ◽  
Free Cortisol ◽  
Main Effect ◽  
Nocturnal Awakening ◽  
Night Awakening

Abstract Free cortisol as measured in saliva increases markedly following awakening. It is not clear, however, whether this is truly a stress-neuroendocrine response to awakening or a manifestation of the hypothalamic-pituitary-adrenal (HPA) circadian cycle. We investigated whether the awakening cortisol response can be generated in the middle of nocturnal sleep, when secretory activity in the HPA axis is low. In a within subject design, salivary cortisol response was measured under three different awakening conditions: (1) awakening at the normal morning awakening time; (2) awakening four hours prior to normal awakening time, and (3) awakening the following morning after interrupted sleep. The overall main effect was a linear increase in free cortisol following awakening with no significant interaction with awakening condition. Cortisol levels, as determined by area under the cortisol curve calculated with reference to zero, did differ by awakening condition. The two morning awakening conditions were comparable but values were lower for night awakening. Area under the curve change (calculated with reference to the first awakening cortisol base value), however, did not distinguish the three awakening conditions. We conclude from these data that there is a clear free cortisol response to awakening for both nocturnal and morning awakening although the absolute levels produced are lower for nocturnal awakening when basal cortisol is low. Nocturnal interruption of sleep did not affect the subsequent morning response.

The Effects of Questionnaire Length and Behavioral Consequences on Careless Responding

2020 ◽  
Vol 36 (2) ◽  
pp. 410-420 ◽  
Author(s):  
Anthony M. Gibson ◽  
Nathan A. Bowling
Keyword(s):  
Self Report ◽  
Randomized Experiments ◽  
High Quality ◽  
Buffering Effect ◽  
Careless Responding ◽  
Main Effect ◽  
Limited Support ◽  
Report Data ◽  
Self Report Data ◽  
Consistent Support

Abstract. The current paper reports the results of two randomized experiments designed to test the effects of questionnaire length on careless responding (CR). Both experiments also examined whether the presence of a behavioral consequence (i.e., a reward or a punishment) designed to encourage careful responding buffers the effects of questionnaire length on CR. Collectively, our two studies found (a) some support for the main effect of questionnaire length, (b) consistent support for the main effect of the consequence manipulations, and (c) very limited support for the buffering effect of the consequence manipulations. Because the advancement of many subfields of psychology rests on the availability of high-quality self-report data, further research should examine the causes and prevention of CR.

The Impact of Endorsing the Belief in a Just World on Social Judgments

2013 ◽  
Vol 44 (3) ◽  
pp. 209-218 ◽  
Author(s):  
Benoît Testé ◽  
Samantha Perrin
Keyword(s):  
Social Desirability ◽  
Social Value ◽  
Social Utility ◽  
Western Society ◽  
Social Judgments ◽  
Just World ◽  
The Social ◽  
Main Effect ◽  
The Impact

The present research examines the social value attributed to endorsing the belief in a just world for self (BJW-S) and for others (BJW-O) in a Western society. We conducted four studies in which we asked participants to assess a target who endorsed BJW-S vs. BJW-O either strongly or weakly. Results showed that endorsement of BJW-S was socially valued and had a greater effect on social utility judgments than it did on social desirability judgments. In contrast, the main effect of endorsement of BJW-O was to reduce the target’s social desirability. The results also showed that the effect of BJW-S on social utility is mediated by the target’s perceived individualism, whereas the effect of BJW-S and BJW-O on social desirability is mediated by the target’s perceived collectivism.

The effect of prevention-focus on academic outcomes: Main effect or interaction

2005 ◽  
Author(s):  
Helen W. Sullivan ◽  
Keilah A. Worth ◽  
Austin S. Baldwin ◽  
Alexander J. Rothman
Keyword(s):  
Academic Outcomes ◽  
Prevention Focus ◽  
Main Effect

Concanavalin A-induced Aggregation of Human Blood Platelets

1975 ◽  
Vol 33 (02) ◽  
pp. 354-360 ◽  
Author(s):  
Heinrich Patscheke ◽  
Reinhard Brossmer
Keyword(s):  
Concanavalin A ◽  
Binding Capacity ◽  
Specific Binding ◽  
Blood Platelets ◽  
Residual Effect ◽  
Independent Effect ◽  
Con A ◽  
Experimental Conditions ◽  
Main Effect ◽  
Induced Aggregation

SummaryConcanavalin A (CON A) causes platelets to aggregate. A Ca++-independent effect of CON A could be separated from a main effect which depends on Ca++. The main effect probably is a consequence of the CON A-induced platelet release reaction and therefore is platelet-specific. The weak residual effect observed in the presence of Na2EDTA may be due to a similar mechanism as has been demonstrated for CON A-induced aggregations of several other normal and malignant transformed animal cells.Na2EDTA did not inhibit the carbohydrate-specific binding capacity of CON A. Therefore, Na2EDTA appears not to demineralize the CON A molecules under these experimental conditions.α-methyl-D-glucoside inhibits the Ca++-independent as well as the Ca++-dependent effect of CON A.Pretreatment by neuraminidase stimulated the platelet aggregation induced by CON A. It is possible that removal of terminal sialic acid residues makes additional receptors accessible for the binding of CON A.

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