Synthetic DNA Libraries for Protein Engineering Toward Process Improvement in Drug Synthesis

2021 ◽  
pp. 33-45
Author(s):  
Michele Tavanti
2020 ◽  
Vol 7 (8) ◽  
pp. 1902802 ◽  
Author(s):  
Ziyang Xu ◽  
Megan C. Wise ◽  
Neethu Chokkalingam ◽  
Susanne Walker ◽  
Edgar Tello‐Ruiz ◽  
...  

2020 ◽  
Vol 7 (8) ◽  
pp. 2070044
Author(s):  
Ziyang Xu ◽  
Megan C. Wise ◽  
Neethu Chokkalingam ◽  
Susanne Walker ◽  
Edgar Tello‐Ruiz ◽  
...  

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Zi-Fu Ni ◽  
Pei Xu ◽  
Min-Hua Zong ◽  
Wen-Yong Lou

AbstractEnzymatic asymmetric amination addition is seen as a promising approach for synthesizing amine derivatives, especially unnatural amino acids, which are valuable precursors to fine chemicals and drugs. Despite the broad substrate spectrum of methylaspartate lyase (MAL), some bulky substrates, such as caffeic acid, cannot be effectively accepted. Herein, we report a group of variants structurally derived from Escherichia coli O157:H7 MAL (EcMAL). A combined mutagenesis strategy was used to simultaneously redesign the key residues of the entrance tunnel and binding pocket to explore the possibility of accepting bulky substrates with potential application to chiral drug synthesis. Libraries of residues capable of lining the active center of EcMAL were then constructed and screened by an effective activity solid-phase color screening method using tyrosinase as a cascade catalyst system. Activity assays and molecular dynamics studies of the resultant variants showed that the substrate specificity of EcMAL was modified by adjusting the polarity of the binding pocket and the degree of flexibility of the entrance tunnel. Compared to M3, the optimal variant M8 was obtained with a 15-fold increase in catalytic activity. This structure-based protein engineering of EcMAL can be used to open new application directions or to develop practical multi-enzymatic processes for the production of various useful compounds.


2003 ◽  
Vol 43 (supplement) ◽  
pp. S79
Author(s):  
S. Ueno ◽  
I. Tabuchi ◽  
S. Soramoto ◽  
K. Hukaisi ◽  
H. Arai ◽  
...  

1986 ◽  
Vol 4 (1) ◽  
pp. 79-116 ◽  
Author(s):  
V.A. Efimov ◽  
O.G. Chakhmakhcheva ◽  
YU.A. Ovchinnikov

2019 ◽  
Vol 476 (24) ◽  
pp. 3835-3847 ◽  
Author(s):  
Aliyath Susmitha ◽  
Kesavan Madhavan Nampoothiri ◽  
Harsha Bajaj

Most Gram-positive bacteria contain a membrane-bound transpeptidase known as sortase which covalently incorporates the surface proteins on to the cell wall. The sortase-displayed protein structures are involved in cell attachment, nutrient uptake and aerial hyphae formation. Among the six classes of sortase (A–F), sortase A of S. aureus is the well-characterized housekeeping enzyme considered as an ideal drug target and a valuable biochemical reagent for protein engineering. Similar to SrtA, class E sortase in GC rich bacteria plays a housekeeping role which is not studied extensively. However, C. glutamicum ATCC 13032, an industrially important organism known for amino acid production, carries a single putative sortase (NCgl2838) gene but neither in vitro peptide cleavage activity nor biochemical characterizations have been investigated. Here, we identified that the gene is having a sortase activity and analyzed its structural similarity with Cd-SrtF. The purified enzyme showed a greater affinity toward LAXTG substrate with a calculated KM of 12 ± 1 µM, one of the highest affinities reported for this class of enzyme. Moreover, site-directed mutation studies were carried to ascertain the structure functional relationship of Cg-SrtE and all these are new findings which will enable us to perceive exciting protein engineering applications with this class of enzyme from a non-pathogenic microbe.


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