ReFold-MAP: Protein remote homology detection and fold recognition based on features extracted from profiles

Analytical Biochemistry ◽

10.1016/j.ab.2020.114013 ◽

2020 ◽

Vol 611 ◽

pp. 114013

Author(s):

Yichen Guo ◽

Ke Yan ◽

Hao Wu ◽

Bin Liu

Keyword(s):

Fold Recognition ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis

BMC Bioinformatics ◽

10.1186/1471-2105-9-510 ◽

2008 ◽

Vol 9 (1) ◽

Author(s):

Bin Liu ◽

Xiaolong Wang ◽

Lei Lin ◽

Qiwen Dong ◽

Xuan Wang

Keyword(s):

Latent Semantic Analysis ◽

Semantic Analysis ◽

Fold Recognition ◽

Homology Detection ◽

Remote Homology ◽

Discriminative Method ◽

Remote Homology Detection

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Building Multiclass Classifiers for Remote Homology Detection and Fold Recognition

10.21236/ada446086 ◽

2006 ◽

Author(s):

Huzefa Rangwala ◽

George Karypis

Keyword(s):

Fold Recognition ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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Protein Fold Recognition and Remote Homology Detection Based on Profile-Level Building Blocks

2010 International Conference on Biomedical Engineering and Computer Science ◽

10.1109/icbecs.2010.5462512 ◽

2010 ◽

Author(s):

Lei Lin ◽

Yi Shen ◽

Bin Liu ◽

Xiaolong Wang

Keyword(s):

Building Blocks ◽

Fold Recognition ◽

Protein Fold ◽

Homology Detection ◽

Remote Homology ◽

Protein Fold Recognition ◽

Level Building ◽

Remote Homology Detection

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Scalable remote homology detection and fold recognition in massive protein networks

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.25669 ◽

2019 ◽

Vol 87 (6) ◽

pp. 478-491

Author(s):

Raphael Petegrosso ◽

Zhuliu Li ◽

Molly A. Srour ◽

Yousef Saad ◽

Wei Zhang ◽

...

Keyword(s):

Fold Recognition ◽

Protein Networks ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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SOFM-Top: Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix

Intelligent Computing Theories and Application - Lecture Notes in Computer Science ◽

10.1007/978-3-319-63312-1_41 ◽

2017 ◽

pp. 469-480

Author(s):

Junjie Chen ◽

Mingyue Guo ◽

Xiaolong Wang ◽

Bin Liu

Keyword(s):

Fold Recognition ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2017.2765331 ◽

2019 ◽

Vol 16 (1) ◽

pp. 292-300 ◽

Author(s):

Bin Liu ◽

Junjie Chen ◽

Mingyue Guo ◽

Xiaolong Wang

Keyword(s):

Fold Recognition ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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A Survey of Remote Homology Detection and Fold Recognition Methods

Introduction to Protein Structure Prediction ◽

10.1002/9780470882207.ch8 ◽

2010 ◽

pp. 165-194 ◽

Author(s):

Huzefa Rangwala

Keyword(s):

Fold Recognition ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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Building multiclass classifiers for remote homology detection and fold recognition

BMC Bioinformatics ◽

10.1186/1471-2105-7-455 ◽

2006 ◽

Vol 7 (1) ◽

Author(s):

Huzefa Rangwala ◽

George Karypis

Keyword(s):

Fold Recognition ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection

Bioinformatics ◽

10.1093/bioinformatics/btn112 ◽

2008 ◽

Vol 24 (10) ◽

pp. 1264-1270 ◽

Author(s):

Theodoros Damoulas ◽

Mark A. Girolami

Keyword(s):

Fold Recognition ◽

Kernel Learning ◽

Protein Fold ◽

Homology Detection ◽

Remote Homology ◽

Protein Fold Recognition ◽

Remote Homology Detection

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Profile-based direct kernels for remote homology detection and fold recognition

Bioinformatics ◽

10.1093/bioinformatics/bti687 ◽

2005 ◽

Vol 21 (23) ◽

pp. 4239-4247 ◽

Author(s):

H. Rangwala ◽

G. Karypis

Keyword(s):

Fold Recognition ◽

Homology Detection ◽

Remote Homology ◽

Remote Homology Detection

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