scholarly journals Agricultural extensification enhances functional diversity but not phylogenetic diversity in Mediterranean olive groves: A case study with ant and bird communities

2022 ◽  
Vol 324 ◽  
pp. 107708
Author(s):  
Vicente García-Navas ◽  
Carlos Martínez-Núñez ◽  
Rubén Tarifa ◽  
Antonio J. Manzaneda ◽  
Francisco Valera ◽  
...  
2016 ◽  
Vol 27 (5) ◽  
pp. 1036-1046 ◽  
Author(s):  
Zdeňka Lososová ◽  
Natálie Čeplová ◽  
Milan Chytrý ◽  
Lubomír Tichý ◽  
Jiří Danihelka ◽  
...  

Author(s):  
Rubén Tarifa ◽  
Carlos Martínez‐Núñez ◽  
Francisco Valera ◽  
Juan P. González‐Varo ◽  
Teresa Salido ◽  
...  

2017 ◽  
Vol 72 ◽  
pp. 565-573 ◽  
Author(s):  
Federico Morelli ◽  
Anders Pape Møller ◽  
Emma Nelson ◽  
Yanina Benedetti ◽  
Muriel Tichit ◽  
...  

2019 ◽  
Vol 9 (19) ◽  
pp. 4035 ◽  
Author(s):  
Adriano Sofo ◽  
Patrizia Ricciuti

Biolog® EcoPlates™ (Biolog Inc., Hayward, CA, USA) were developed to analyse the functional diversity of bacterial communities by means of measuring their ability to oxidize carbon substrates. This technique has been successfully adopted for studying bacterial soil communities from different soil environments, polluted soils and soils subjected to various agronomic treatments. Unfortunately, Biolog® EcoPlates™ assay, especially working on soil, can be difficult to reproduce and hard to standardize due to the lack of detailed procedures and protocols. The main problems of this technique mainly regard soil preparation, bacterial inoculum densities and a correct definition of blank during the calculation of the diversity indices. On the basis of our previous research on agricultural soils, we here propose a standardized and accurate step-by-step method for estimating the functional diversity of a soil bacterial community by Biolog® EcoPlatesTM assay. A case study of soils sampled in a Mediterranean olive orchard managed accordingly to sustainable/conservation practices was reported for justifying the standardized method here used. The results of this methodological paper could be important for correctly evaluating and comparing the microbiological fertility of soils managed by sustainable/conservation or conventional/non-conservation systems.


The Auk ◽  
2020 ◽  
Vol 137 (4) ◽  
Author(s):  
Facundo Xavier Palacio ◽  
René E Maragliano ◽  
Diego Montalti

Abstract Functional diversity (FD) approaches have been increasingly used to understand ecosystem functioning in bird communities. These approaches typically rely on the assumption that species are perfectly detected in the field, despite the fact that imperfect detection represents a ubiquitous source of bias in biodiversity studies. This may be notably important in FD studies, because detection may depend on the functional traits used to compute FD metrics. However, little effort has been devoted to account for imperfect detection in FD studies, and therefore the degree to which species traits and detectability affects FD remains poorly understood. We predict that observed FD metrics may either underestimate or overestimate detection-corrected FD, because FD has multiple independent dimensions with different data properties. We assessed whether detection was related to bird traits (body mass, diet, and foraging stratum), accounting for habitat type, season, and phylogeny. We then used a multi-species occupancy model to obtain detection-corrected FD metrics (functional richness [FRic], functional evenness [FEve], and functional divergence [FDiv]), and compared observed and detection-corrected FD estimates in bird communities from east-central Argentina. Some functional types of birds (raptors and insectivores) were more easily overlooked, whereas others (seed and leaf eaters) were more easily detected. Some observed FD metrics underestimated detection-corrected FD (FRic and FDiv), whereas some others (FEve) overestimated detection-corrected FD. Both observed and detection-corrected FRic revealed differences between seasons, but not between habitat types. However, detection-corrected FEve and FDiv showed differences between seasons, contrary to observed estimates. Our results indicate that failure to account for unequal ease of detecting species can lead to erroneous estimates of FD because some functional types of birds are more easily overlooked. We outline some guidelines to help ornithologists identifying under which circumstances detection may be a concern and warn against the indiscriminate use of FD metrics without accounting for species detection.


2011 ◽  
Vol 50 (No. 4) ◽  
pp. 141-148 ◽  
Author(s):  
J. Hofman ◽  
J. Švihálek ◽  
I. Holoubek

In our case study, we measured the functional diversity of the microbial communities of twelve soils from the small natural area to assess if this assay is suitable for routine monitoring of soil biological quality. We found the BIOLOG assay meets especially practical benefits in routine monitoring of soils being simple and quick assay. However, we confirmed the ambiguity about the most appropriate analysis of the BIOLOG multivariate data and about the best parameter, which can be derived from the assay. The different analyses of the data were examined and various parameters derived from the BIOLOG assay were comparatively used to contribute to the discussion of how the data should be evaluated. We showed that not-normalized raw absorbances or trapezoid areas should be used for calculation of diversity index if the inoculum was standardized. There was no single answer to what parameter provided more correct results in the multivariate statistical analysis. Evaluating at least one not-normalized (e.g. trapezoid area) and one normalized parameter (e.g. absorbances read in fixed AWCD) was strongly suggested keeping in mind that they reveal different information.


Agronomy ◽  
2019 ◽  
Vol 9 (10) ◽  
pp. 644 ◽  
Author(s):  
Jastrzębska ◽  
Kostrzewska ◽  
Marks ◽  
Jastrzębski ◽  
Treder ◽  
...  

In recent years, sustainable agriculture has revitalized interest in crop rotations and their effects on crop performance and agroecosystem biodiversity, including weeds. This article used winter rye as an example and focused on the crop rotation (CR) impact on species, taxonomic and functional diversity of weed communities and analysed the contribution of crop rotation to protecting yield and regulating weed abundance. Long-term continuous rye cropping (CC) provided a background for comparison. Two variants of plant protection were also adopted: herbicide application (H+) and no plant protection (H−). The data from the 10th, 30th and 50th years of the experiment were included in the analysis. Diversified crop rotation with no chemical protection resulted in a satisfactory rye yield and reduced weed abundance—especially problem species—without a decrease in weed species diversity or functional diversity. When rye was grown under crop rotation, the herbicide application had no effect on yield protection, but it was harmful to weed biodiversity. The rye yield correlated negatively with weed biomass, but did not show a link with weed biodiversity. Continuation of long-term experiments as a research basis for contemporary and future scientific challenges is necessary.


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