scholarly journals The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes

2022 ◽  
Vol 22 ◽  
pp. 100936
Author(s):  
André M. Machado ◽  
Sergio Fernández-Boo ◽  
Manuel Nande ◽  
Rui Pinto ◽  
Benjamin Costas ◽  
...  
2021 ◽  
Author(s):  
André M. Machado ◽  
Sergio Fernández-Boo ◽  
Manuel Nande ◽  
Rui Pinto ◽  
Benjamin Costas ◽  
...  

AbstractParacentrotus lividus is the most abundant, distributed and desirable echinoid species in Europe. Although, economically important, this species has scarce genomic resources available. Here, we produced and comprehensively characterized the male and female gonad transcriptome of P. lividus. The P. lividus transcriptome assembly has 53,865 transcripts, an N50 transcript length of 1,842 bp and an estimated gene completeness of 97.4% and 95.6% in Eukaryota and Metazoa BUSCO databases, respectively. Differential gene expression analyses yielded a total of 3371 and 3351 up regulated genes in P. lividus male and female gonad tissues, respectively. Additionally, we analysed and validated a catalogue of pivotal transcripts involved in sexual development and determination (206 transcripts) as well as in biosynthesis and storage of lipids (119 transcripts) in male and female specimens. This study provides a valuable transcriptomic resource and will contribute for the future conservation of the species as well as the exploitation in aquaculture settings.HighlightsAssembly of a reference transcriptome of Paracentrotus lividus gonads.Differential gene expression between males and female gonads of Paracentrotus lividus.Identification and validation of pivotal genes involved in biosynthesis and storage of lipids.


2020 ◽  
Vol 8 (9) ◽  
pp. 661
Author(s):  
Davide Asnicar ◽  
Costanza Cappelli ◽  
Ahmad Safuan Sallehuddin ◽  
Nur Atiqah Maznan ◽  
Maria Gabriella Marin

Despite the widespread use of herbicide glyphosate in cultivation, its extensive runoff into rivers and to coastal areas, and the persistence of this chemical and its main degradation product (aminomethylphosphonic acid, AMPA) in the environment, there is still little information on the potential negative effects of glyphosate, its commercial formulation Roundup® and AMPA on marine species. This study was conducted with the aim of providing a comparative evaluation of the effects of glyphosate-based and its derived chemicals on the larval development of the sea urchin Paracentrotus lividus, thus providing new data to describe the potential ecotoxicity of these contaminants. In particular, the effects on larval development, growth and metabolism were assessed during 48 h of exposure from the time of egg fertilization. The results confirm that AMPA and its parent compound, glyphosate have similar toxicity, as observed in other marine invertebrates. However, interestingly, the Roundup® formulation seemed to be less toxic than the glyphosate alone.


Author(s):  
F. Sellem ◽  
B. Bouhaouala-Zahar

AbstractThe present study was conducted to provide biometric data of the edible sea urchin Paracentrotus lividus along the Tunisian coastline where thirteen marine localities were selected randomly. A total of 653 individuals were collected and their metric and weight measurements were recorded. The size distribution of the different samples was determined and relative growth expressions were deduced. Data analysis showed that all localities’ samples of the wild population were dominated by one-size class, except Port Prince and Haouaria. Interestingly, only diameter-height relationships (D-H) were different between the geographical localities. Diameter-weight relationships (D-TW and D-TWTE) revealed a significant negative growth for all the localities, with the exception of Gammarth which showed positive growth for total weight (D-TW). Moreover, the multivariable analysis revealed divergences and/or similarities between metric and weight variables. Altogether, data highlights the inter-population discrimination with respect to geographic localization and clear segregation between the northern and the eastern localities demonstrated the plasticity of the species.


2010 ◽  
Vol 157 (6) ◽  
pp. 1293-1300 ◽  
Author(s):  
Julie Hermans ◽  
Catherine Borremans ◽  
Philippe Willenz ◽  
Luc André ◽  
Philippe Dubois

2007 ◽  
Vol 33 (2) ◽  
pp. 84-91 ◽  
Author(s):  
A. Meziti ◽  
K. Ar. Kormas ◽  
M. -A. Pancucci-Papadopoulou ◽  
M. Thessalou-Legaki

PLoS ONE ◽  
2012 ◽  
Vol 7 (4) ◽  
pp. e35170 ◽  
Author(s):  
Patricia Prado ◽  
Fiona Tomas ◽  
Stefania Pinna ◽  
Simone Farina ◽  
Guillem Roca ◽  
...  

2004 ◽  
Vol 13 (11) ◽  
pp. 3317-3328 ◽  
Author(s):  
SANDRA DURAN ◽  
CRUZ PALACÍN ◽  
MIKEL A. BECERRO ◽  
XAVIER TURON ◽  
GONZALO GIRIBET

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