Conformational exchange of the Zα domain of human RNA editing enzyme ADAR1 studied by NMR spectroscopy

Author(s):  
Youyeon Go ◽  
Hye-Bin Ahn ◽  
Byeong-Seon Kim ◽  
Ae-Ree Lee ◽  
Kwang-Im Oh ◽  
...  
2000 ◽  
Vol 275 (35) ◽  
pp. 26828-26833
Author(s):  
Yang-Gyun Kim ◽  
Ky Lowenhaupt ◽  
Stefan Maas ◽  
Alan Herbert ◽  
Thomas Schwartz ◽  
...  
Keyword(s):  
Z Dna ◽  

1999 ◽  
Vol 40 (4) ◽  
pp. 623-635 ◽  
Author(s):  
Ba-Bie Teng ◽  
Scott Ochsner ◽  
Qian Zhang ◽  
Kizhake V. Soman ◽  
Paul P. Lau ◽  
...  

2020 ◽  
Vol 127 (4) ◽  
pp. 550-552
Author(s):  
Joseph B. Moore ◽  
Ghazal Sadri ◽  
Annalara G. Fischer ◽  
Tyler Weirick ◽  
Giuseppe Militello ◽  
...  

Structure ◽  
2007 ◽  
Vol 15 (4) ◽  
pp. 395-404 ◽  
Author(s):  
Diana Placido ◽  
Bernard A. Brown ◽  
Ky Lowenhaupt ◽  
Alexander Rich ◽  
Alekos Athanasiadis

2021 ◽  
Vol 5 (3) ◽  
pp. e202101191
Author(s):  
Xinfeng Guo ◽  
Silvia Liu ◽  
Rose Yan ◽  
Vy Nguyen ◽  
Mazen Zenati ◽  
...  

The RNA-sensing signaling pathway has been well studied as an essential antiviral mechanism of innate immunity. However, its role in non-infected cells is yet to be thoroughly characterized. Here, we demonstrated that the RNA sensing signaling pathway also reacts to the endogenous cellular RNAs in endothelial cells (ECs), and this reaction is regulated by the RNA-editing enzyme ADAR1. Cellular RNA sequencing analysis showed that EC RNAs endure extensive RNA editing, especially in the RNA transcripts of short interspersed nuclear elements. The EC-specific deletion of ADAR1 dramatically reduced the editing level on short interspersed nuclear element RNAs, resulting in newborn death in mice with damage evident in multiple organs. Genome-wide gene expression analysis revealed a prominent innate immune activation with a dramatically elevated expression of interferon-stimulated genes. However, blocking the RNA sensing signaling pathway by deletion of the cellular RNA receptor MDA-5 prevented interferon-stimulated gene expression and rescued the newborn mice from death. This evidence demonstrated that the RNA-editing/RNA-sensing signaling pathway dramatically modulates EC function, representing a novel molecular mechanism for the regulation of EC functions.


2021 ◽  
Vol 53 ◽  
pp. S90
Author(s):  
M.T. Segreto ◽  
D. Di Fusco ◽  
S. Sessa ◽  
G. Di Maggio ◽  
C. Maresca ◽  
...  

2020 ◽  
Vol 21 (8) ◽  
pp. 2673 ◽  
Author(s):  
Kwang-Im Oh ◽  
Jinwoo Kim ◽  
Chin-Ju Park ◽  
Joon-Hwa Lee

The non-canonical structures of nucleic acids are essential for their diverse functions during various biological processes. These non-canonical structures can undergo conformational exchange among multiple structural states. Data on their dynamics can illustrate conformational transitions that play important roles in folding, stability, and biological function. Here, we discuss several examples of the non-canonical structures of DNA focusing on their dynamic characterization by NMR spectroscopy: (1) G-quadruplex structures and their complexes with target proteins; (2) i-motif structures and their complexes with proteins; (3) triplex structures; (4) left-handed Z-DNAs and their complexes with various Z-DNA binding proteins. This review provides insight into how the dynamic features of non-canonical DNA structures contribute to essential biological processes.


2010 ◽  
Vol 24 (10) ◽  
pp. 3720-3732 ◽  
Author(s):  
Liu Yang ◽  
Liyun Zhao ◽  
Zhenji Gan ◽  
Zixuan He ◽  
Jingyue Xu ◽  
...  

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