System performance and microbial community in ethanol-fed anaerobic reactors acclimated with different organic carbon to sulfate ratios

2019 ◽  
Vol 278 ◽  
pp. 34-42 ◽  
Author(s):  
Danfei Zeng ◽  
Qidong Yin ◽  
Qing Du ◽  
Guangxue Wu
Keyword(s):  
Microbial Community ◽  
Organic Carbon ◽  
System Performance ◽  
Anaerobic Reactors

Carbocentric limnology: looking back, looking forward

2008 ◽  
Vol 65 (3) ◽  
pp. 543-548 ◽  
Author(s):  
Yves T Prairie
Keyword(s):  
Carbon Dioxide ◽  
Organic Matter ◽  
Microbial Community ◽  
Organic Carbon ◽  
Dissolved Organic Carbon ◽  
Carbon Budget ◽  
Metabolic Balance ◽  
Lake Ecosystems ◽  
Looking Back ◽  
Landscape Level

In this perspective article, I argue that dissolved organic carbon occupies a central role in the functioning of lake ecosystems, comparable in importance to that played by nutrients. Because lakes receive so much dissolved organic carbon from the terrestrial landscape, its accumulation in water bodies usually represents the largest pool of lacustrine organic matter within the water column. The transformation of even a small fraction of this external carbon by the microbial community can alter significantly the metabolic balance of lake ecosystems, simultaneously releasing carbon dioxide to the atmosphere and burying organic carbon in lake sediments. At the landscape level, even if they occupy a small fraction of the landscape, lakes play a surprisingly important role in the regional carbon budget, particularly when considered at the appropriate temporal scale.

scholarly journals Biochemical characteristics and bacterial community structure of the sea surface microlayer in the South Pacific Ocean

2007 ◽  
Vol 4 (4) ◽  
pp. 2809-2844 ◽  
Author(s):  
I. Obernosterer ◽  
P. Catala ◽  
R. Lami ◽  
J. Caparros ◽  
J. Ras ◽  
...  
Keyword(s):  
Organic Matter ◽  
Microbial Community ◽  
Pacific Ocean ◽  
Organic Carbon ◽  
South Pacific ◽  
Leucine Incorporation ◽  
Surface Microlayer ◽  
South Pacific Ocean ◽  
Subsurface Waters ◽  
Card Fish

Abstract. The chemical and biological characteristics of the surface microlayer were determined during a transect across the South Pacific Ocean in October-December 2004. Concentrations of particulate organic carbon (1.3 to 7.6-fold) and nitrogen (1.4 to 7), and POC:PON ratios were consistently higher in the surface microlayer as compared to subsurface waters (5 m). The large variability in particulate organic matter enrichment was negatively correlated to wind speed. No enhanced concentrations of dissolved organic carbon were detectable in the surface microlayer as compared to 5 m, but chromophoric dissolved organic matter was markedly enriched (by 2 to 4-fold) at all sites. Based on pigment analysis and cell counts, no consistent enrichment of any of the major components of the autotrophic and heterotrophic microbial community was detectable. CE-SSCP fingerprints and CARD FISH revealed that the bacterial communities present in the surface microlayer had close similarity (>76%) to those in subsurface waters. By contrast, bacterial heterotrophic production (3H-leucine incorporation) was consistently lower in the surface microlayer than in subsurface waters. By applying CARD-FISH and microautoradiography, we observed that Bacteroidetes and Gammaproteobacteria dominated leucine uptake in the surface microlayer, while in subsurface waters Bacteroidetes and Alphaproteobacteria were the major groups accounting for leucine incorporation. Our results demonstrate that the microbial community in the surface microlayer closely resembles that of the surface waters of the open ocean. However, even short time periods in the surface microlayer result in differences in bacterial groups accounting for leucine incorporation, probably as a response to the differences in the physical and chemical nature of the two layers.

scholarly journals System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor

mSystems ◽  
2020 ◽  
Vol 5 (4) ◽  
Author(s):  
Hsiao-Pei Lu ◽  
Yung-Hsien Shao ◽  
Jer-Horng Wu ◽  
Chih-hao Hsieh
Keyword(s):  
Time Series ◽  
Microbial Community ◽  
System Performance ◽  
Time Series Data ◽  
Microbial Consortia ◽  
Series Data ◽  
Resolution Time ◽  
Physicochemical Variables ◽  
System Functioning ◽  
Fine Resolution

ABSTRACT Performance of a bioreactor is affected by complex microbial consortia that regulate system functional processes. Studies so far, however, have mainly emphasized the selective pressures imposed by operational conditions (i.e., deterministic external physicochemical variables) on the microbial community as well as system performance, but have overlooked direct effects of the microbial community on system functioning. Here, using a bioreactor with ammonium as the sole substrate under controlled operational settings as a model system, we investigated succession of the bacterial community after a disturbance and its impact on nitrification and anammox (anaerobic ammonium oxidation) processes with fine-resolution time series data. System performance was quantified as the ratio of the fed ammonium converted to anammox-derived nitrogen gas (N2) versus nitrification-derived nitrate (npNO3−). After the disturbance, the N2/npNO3− ratio first decreased, then recovered, and finally stabilized until the end. Importantly, the dynamics of N2/npNO3− could not be fully explained by physicochemical variables of the system. In comparison, the proportion of variation that could be explained substantially increased (tripled) when the changes in bacterial composition were taken into account. Specifically, distinct bacterial taxa tended to dominate at different successional stages, and their relative abundances could explain up to 46% of the variation in nitrogen removal efficiency. These findings add baseline knowledge of microbial succession and emphasize the importance of monitoring the dynamics of microbial consortia for understanding the variability of system performance. IMPORTANCE Dynamics of microbial communities are believed to be associated with system functional processes in bioreactors. However, few studies have provided quantitative evidence. The difficulty of evaluating direct microbe-system relationships arises from the fact that system performance is affected by convolved effects of microbiota and bioreactor operational parameters (i.e., deterministic external physicochemical forcing). Here, using fine-resolution time series data (daily sampling for 2 months) under controlled operational settings, we performed an in-depth analysis of system performance as a function of the microbial community in the context of bioreactor physicochemical conditions. We obtained statistically evaluated results supporting the idea that monitoring microbial community dynamics could improve the ability to predict system functioning, beyond what could be explained by operational physicochemical variables. Moreover, our results suggested that considering the succession of multiple bacterial taxa would account for more system variation than focusing on any particular taxon, highlighting the need to integrate microbial community ecology for understanding system functioning.

scholarly journals Plant Species-Dependent Effects of Liming and Plant Residue Incorporation on Soil Bacterial Community and Activity in an Acidic Orchard Soil

2020 ◽  
Vol 10 (16) ◽  
pp. 5681
Author(s):  
Xiaodi Liu ◽  
Zengwei Feng ◽  
Yang Zhou ◽  
Honghui Zhu ◽  
Qing Yao
Keyword(s):  
Microbial Community ◽  
Organic Carbon ◽  
Community Composition ◽  
Plant Species ◽  
Soil Ph ◽  
Microbial Community Composition ◽  
Plant Residue ◽  
Acidic Soils ◽  
Residue Incorporation ◽  
Test Plants

Both liming and plant residue incorporation are widely used practices for the amelioration of acidic soils—however, the difference in their effects is still not fully understood, especially regarding the microbial community. In this study, we took the acidic soils from a subtropical orchard as target soils, and implemented liming and plant residue incorporation with a leguminous and a gramineous cover crop as test plants. After six months of growth, soil pH, total organic carbon (TOC), dissolved organic carbon (DOC) and nutrient contents were determined, soil enzymes involving C, N, P cycling were assayed, and microbial communities were also analyzed using Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis (PCR-DGGE). Results showed that liming was more effective in elevating soil pH, while plant residue incorporation exerted a more comprehensive influence—not only on soil pH, but also on soil enzyme activity and microbial community. PCR-DGGE analysis revealed that liming changed the microbial community structure more greatly than plant residue incorporation, while plant residue incorporation altered the microbial community composition much more than liming. The growth responses of test plants to liming and plant residue incorporation depended on plant species, indicating the necessity to select appropriate practice for a particular crop. A further, detailed investigation into the microbial community composition, and the respective functions using metagenomic approach, is also suggested.

scholarly journals Coupled changes in soil organic carbon fractions and microbial community composition in urban and suburban forests

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Xueying Zhang ◽  
Xiaomei Chen ◽  
Muying Liu ◽  
Zhanying Xu ◽  
Hui Wei
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Organic Carbon ◽  
Soil Organic Carbon ◽  
Community Composition ◽  
Microbial Community Structure ◽  
Soil Microorganisms ◽  
Microbial Community Composition ◽  
Soil C ◽  
Suburban Forests

Abstract Climate change and rapid urbanization have greatly impacted urban forest ecosystems and the carbon (C) cycle. To assess the effects of urbanization on forest soil C and soil microorganisms, six natural forests in a highly-urbanized region were selected as the research objects. Soil samples were collected to investigate the content and fractions of the soil organic carbon (SOC), as well as the soil microbial community composition. The results showed that the SOC content and fractions were substantially lower in the urban forests than in the suburban forests. Meanwhile, the total amount of phospholipid fatty acids (PLFAs) at suburban sites was twice more than that at urban sites, with shifts in microbial community structure. The potential differences in C inputs and nutrient limitation in urban forests may aggravate the low quantity and quality of SOC and consequently impact microbial community abundance and structure. Variation in microbial community structure was found to explain the loss of soil C pools by affecting the C inputs and promoting the decomposition of SOC. Therefore, the coupled changes in SOC and soil microorganisms induced by urbanization may adversely affect soil C sequestration in subtropical forests.

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