Motion of aromatic side chains, picosecond fluorescence, and internal energy transfer in Escherichia coli thioredoxin studied by site-directed mutagenesis, time-resolved fluorescence spectroscopy, and molecular dynamics simulations

Arne Elofsson; Rudolf Rigler; Lennart Nilsson; Johnny Roslund; Gunter Krause; Arne Holmgren

doi:10.1021/bi00104a012

Motion of aromatic side chains, picosecond fluorescence, and internal energy transfer in Escherichia coli thioredoxin studied by site-directed mutagenesis, time-resolved fluorescence spectroscopy, and molecular dynamics simulations

Biochemistry ◽

10.1021/bi00104a012 ◽

1991 ◽

Vol 30 (40) ◽

pp. 9648-9656 ◽

Cited By ~ 13

Author(s):

Arne Elofsson ◽

Rudolf Rigler ◽

Lennart Nilsson ◽

Johnny Roslund ◽

Gunter Krause ◽

...

Keyword(s):

Escherichia Coli ◽

Molecular Dynamics ◽

Energy Transfer ◽

Fluorescence Spectroscopy ◽

Molecular Dynamics Simulations ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Time Resolved Fluorescence ◽

Time Resolved ◽

Dynamics Simulations

Get full-text (via PubEx)

Time-resolved fluorescence spectroscopy and molecular dynamics simulations point out the effects of pressure on the stability and dynamics of the porcine odorant-binding protein

Biopolymers ◽

10.1002/bip.20908 ◽

2008 ◽

Vol 89 (4) ◽

pp. 284-291 ◽

Cited By ~ 6

Author(s):

Maria Staiano ◽

Michele Saviano ◽

Petr Herman ◽

Zygmunt Grycznyski ◽

Carlo Fini ◽

...

Keyword(s):

Molecular Dynamics ◽

Fluorescence Spectroscopy ◽

Molecular Dynamics Simulations ◽

Odorant Binding Protein ◽

Time Resolved Fluorescence ◽

Time Resolved ◽

The Stability ◽

Dynamics Simulations ◽

Odorant Binding ◽

Porcine Odorant Binding Protein

Get full-text (via PubEx)

The utility of molecular dynamics simulations for understanding site-directed mutagenesis of glycine residues in biotin carboxylase

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.22190 ◽

2009 ◽

Vol 74 (4) ◽

pp. 808-819 ◽

Cited By ~ 3

Author(s):

Tee Bordelon ◽

Sten O. Nilsson Lill ◽

Grover L. Waldrop

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Biotin Carboxylase ◽

Dynamics Simulations

Get full-text (via PubEx)

Study of Human Orexin-1 and -2 G-Protein-Coupled Receptors with Novel and Published Antagonists by Modeling, Molecular Dynamics Simulations, and Site-Directed Mutagenesis

Biochemistry ◽

10.1021/bi300136h ◽

2012 ◽

Vol 51 (15) ◽

pp. 3178-3197 ◽

Cited By ~ 30

Author(s):

Alexander Heifetz ◽

G. Benjamin Morris ◽

Philip C. Biggin ◽

Oliver Barker ◽

Tara Fryatt ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

G Protein ◽

G Protein Coupled Receptors ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Dynamics Simulations ◽

G Protein Coupled

Get full-text (via PubEx)

Functional and structural characterization of the pentapeptide insertion of Theileria annulata lactate dehydrogenase by site-directed mutagenesis, comparative modeling and molecular dynamics simulations

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2017.04.010 ◽

2017 ◽

Vol 74 ◽

pp. 344-351 ◽

Cited By ~ 1

Author(s):

Aysegul Erdemir ◽

Ozal Mutlu

Keyword(s):

Molecular Dynamics ◽

Lactate Dehydrogenase ◽

Molecular Dynamics Simulations ◽

Structural Characterization ◽

Comparative Modeling ◽

Theileria Annulata ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Dynamics Simulations

Get full-text (via PubEx)

Density relaxation and particle motion characteristics in a non-ionic deep eutectic solvent (acetamide + urea): Time-resolved fluorescence measurements and all-atom molecular dynamics simulations

The Journal of Chemical Physics ◽

10.1063/1.4906119 ◽

2015 ◽

Vol 142 (3) ◽

pp. 034505 ◽

Cited By ~ 43

Author(s):

Anuradha Das ◽

Suman Das ◽

Ranjit Biswas

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Particle Motion ◽

Deep Eutectic Solvent ◽

Time Resolved Fluorescence ◽

Time Resolved ◽

Fluorescence Measurements ◽

Motion Characteristics ◽

Dynamics Simulations

Get full-text (via PubEx)

Effects of ligand binding on the conformation and internal dynamics in specific regions of porcine pancreatic phospholipase A 2 with tryptophan as a probe: a study combining time-resolved fluorescence spectroscopy and site-directed mutagenesis (same as p. 100)

10.1117/12.17755 ◽

1990 ◽

Author(s):

Oscar Kuipers ◽

Michel Vincent ◽

Jean-Claude Brochon ◽

Bert Verheij ◽

Gerard de Haas ◽

...

Keyword(s):

Fluorescence Spectroscopy ◽

Ligand Binding ◽

Phospholipase A ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Time Resolved Fluorescence ◽

Internal Dynamics ◽

Time Resolved ◽

Pancreatic Phospholipase ◽

Phospholipase A 2

Get full-text (via PubEx)

Probing the Effect of the Non-Active-Site Mutation Y229W in New Delhi Metallo-β-lactamase-1 by Site-Directed Mutagenesis, Kinetic Studies, and Molecular Dynamics Simulations

PLoS ONE ◽

10.1371/journal.pone.0082080 ◽

2013 ◽

Vol 8 (12) ◽

pp. e82080 ◽

Cited By ~ 18

Author(s):

Jiao Chen ◽

Hui Chen ◽

Yun Shi ◽

Feng Hu ◽

Xingzhen Lao ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Active Site ◽

Kinetic Studies ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

New Delhi ◽

Site Mutation ◽

Dynamics Simulations

Get full-text (via PubEx)

Effects of ligand binding on the conformation and internal dynamics in specific regions of porcine pancreatic phospholipase A 2 with tryptophan as a probe: a study combinging time-resolved fluorescence spectroscopy and site-directed mutagenesis (same as p. 628)

10.1117/12.17728 ◽

1990 ◽

Cited By ~ 1

Author(s):

Oscar Kuipers ◽

Michel Vincent ◽

Jean-Claude Brochon ◽

Bert Verheij ◽

Gerard de Haas ◽

...

Keyword(s):

Fluorescence Spectroscopy ◽

Ligand Binding ◽

Phospholipase A ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Time Resolved Fluorescence ◽

Internal Dynamics ◽

Time Resolved ◽

Pancreatic Phospholipase ◽

Phospholipase A 2

Get full-text (via PubEx)

Amino Acid Oxidation of Candida antarctica Lipase B Studied by Molecular Dynamics Simulations and Site-Directed Mutagenesis

Biochemistry ◽

10.1021/bi301298m ◽

2013 ◽

Vol 52 (7) ◽

pp. 1280-1289 ◽

Cited By ~ 15

Author(s):

Mehdi Irani ◽

Ulrika Törnvall ◽

Samuel Genheden ◽

Marianne Wittrup Larsen ◽

Rajni Hatti-Kaul ◽

...

Keyword(s):

Molecular Dynamics ◽

Amino Acid ◽

Molecular Dynamics Simulations ◽

Site Directed Mutagenesis ◽

Candida Antarctica Lipase B ◽

Acid Oxidation ◽

Directed Mutagenesis ◽

Candida Antarctica Lipase ◽

Amino Acid Oxidation ◽

Dynamics Simulations

Get full-text (via PubEx)

Solution studies on the complex of 4′-epiadriamycin-d-(CGATCG)2 followed by time-resolved fluorescence measurement, diffusion ordered spectroscopy and restrained molecular dynamics simulations

Bioorganic & Medicinal Chemistry ◽

10.1016/j.bmc.2009.02.032 ◽

2009 ◽

Vol 17 (7) ◽

pp. 2793-2811 ◽

Cited By ~ 3

Author(s):

Prashansa Agrawal ◽

Sudhir Kumar Barthwal ◽

Girjesh Govil ◽

Ritu Barthwal

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Fluorescence Measurement ◽

Time Resolved Fluorescence ◽

Time Resolved ◽

Solution Studies ◽

Dynamics Simulations ◽

Restrained Molecular Dynamics

Get full-text (via PubEx)