scholarly journals Corrigendum to: Antibiotic Treatment Regimes as a Driver of the Global Population Dynamics of a Major Gonorrhea Lineage

2022 ◽  
Vol 39 (1) ◽  
Author(s):  
Magnus N Osnes ◽  
Lucy van Dorp ◽  
Ola B Brynildsrud ◽  
Kristian Alfsnes ◽  
Thamarai Schneiders ◽  
...  
2014 ◽  
Author(s):  
Andrey Korotayev ◽  
Jonas J. Nazimoff Shaende ◽  
Jack A. Goldstone

2021 ◽  
Author(s):  
Ismael Hernández-González ◽  
Valeria Mateo-Estrada ◽  
Santiago Castillo-Ramírez

AbstractAntimicrobial resistance (AR) is a major global threat to public health. Understanding the population dynamics of AR is critical to restrain and control this issue. However, no study has provided a global picture of the resistome of Acinetobacter baumannii, a very important nosocomial pathogen. Here we analyze 1450+ genomes (covering > 40 countries and > 4 decades) to infer the global population dynamics of the resistome of this species. We show that gene flow and horizontal transfer have driven the dissemination of AR genes in A. baumannii. We found considerable variation in AR gene content across lineages. Although the individual AR gene histories have been affected by recombination, the AR gene content has been shaped by the phylogeny. Furthermore, many AR genes have been transferred to other well-known pathogens, such as Pseudomonas aeruginosa or Klebsiella pneumoniae. Finally, despite using this massive data set, we were not able to sample the whole diversity of AR genes, which suggests that this species has an open resistome. Ours results highlight the high mobilization risk of AR genes between important pathogens. On a broader perspective, this study gives a framework for an emerging perspective (resistome-centric) on the genome epidemiology (and surveillance) of bacterial pathogens.


2006 ◽  
Vol 10 (11) ◽  
pp. 1-14 ◽  
Author(s):  
Franz X. Faust ◽  
Cristóbal Gnecco ◽  
Hermann Mannstein ◽  
Jörg Stamm

Abstract This article promotes the hypothesis that the massive demographic collapse of the native populations of the Americas triggered by the European colonization brought about the abandonment of large expanses of agricultural fields soon recovered by forests, which in due turn fixed atmospheric CO2 in significant quantities. This hypothesis is supported by measurements of atmospheric CO2 levels in ice cores from Law Dome, Antarctica. Changing the focus from paleoclimate to global population dynamics and using the same causal chain, the measured drop in historic atmospheric CO2 levels can also be looked upon as further, strong evidence for the postconquest demographic collapse of the Americas.


Author(s):  
Nabil T. Fadai ◽  
Stuart T. Johnston ◽  
Matthew J. Simpson

We present a solid theoretical foundation for interpreting the origin of Allee effects by providing the missing link in understanding how local individual-based mechanisms translate to global population dynamics. Allee effects were originally proposed to describe population dynamics that cannot be explained by exponential and logistic growth models. However, standard methods often calibrate Allee effect models to match observed global population dynamics without providing any mechanistic insight. By introducing a stochastic individual-based model, with proliferation, death and motility rates that depend on local density, we present a modelling framework that translates particular global Allee effects to specific individual-based mechanisms. Using data from ecology and cell biology, we unpack individual-level mechanisms implicit in an Allee effect model and provide simulation tools for others to repeat this analysis.


2019 ◽  
Vol 116 (36) ◽  
pp. 17635-17640 ◽  
Author(s):  
Emrah Şimşek ◽  
Minsu Kim

Genetically identical microbial cells respond to stress heterogeneously, and this phenotypic heterogeneity contributes to population survival. Quantitative analysis of phenotypic heterogeneity can reveal dynamic features of stochastic mechanisms that generate heterogeneity. Additionally, it can enable a priori prediction of population dynamics, elucidating microbial survival strategies. Here, we quantitatively analyzed the persistence of an Escherichia coli population. When a population is confronted with antibiotics, a majority of cells is killed but a subpopulation called persisters survives the treatment. Previous studies have found that persisters survive antibiotic treatment by maintaining a long period of lag phase. When we quantified the lag time distribution of E. coli cells in a large dynamic range, we found that normal cells rejuvenated with a lag time distribution that is well captured by an exponential decay [exp(−kt)], agreeing with previous studies. This exponential decay indicates that their rejuvenation is governed by a single rate constant kinetics (i.e., k is constant). Interestingly, the lag time distribution of persisters exhibited a long tail captured by a power-law decay. Using a simple quantitative argument, we demonstrated that this power-law decay can be explained by a wide variation of the rate constant k. Additionally, by developing a mathematical model based on this biphasic lag time distribution, we quantitatively explained the complex population dynamics of persistence without any ad hoc parameters. The quantitative features of persistence demonstrated in our work shed insights into molecular mechanisms of persistence and advance our knowledge of how a microbial population evades antibiotic treatment.


2015 ◽  
Vol 312 ◽  
pp. 150-165 ◽  
Author(s):  
Amiya Ranjan Bhowmick ◽  
Bapi Saha ◽  
Joydev Chattopadhyay ◽  
Santanu Ray ◽  
Sabyasachi Bhattacharya

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