scholarly journals Linking dimensions of data on global marine animal diversity

2020 ◽  
Vol 375 (1814) ◽  
pp. 20190445 ◽  
Author(s):  
Thomas J. Webb ◽  
Bart Vanhoorne

Recent decades have seen an explosion in the amount of data available on all aspects of biodiversity, which has led to data-driven approaches to understand how and why diversity varies in time and space. Global repositories facilitate access to various classes of species-level data including biogeography, genetics and conservation status, which are in turn required to study different dimensions of diversity. Ensuring that these different data sources are interoperable is a challenge as we aim to create synthetic data products to monitor the state of the world's biodiversity. One way to approach this is to link data of different classes, and to inventory the availability of data across multiple sources. Here, we use a comprehensive list of more than 200 000 marine animal species, and quantify the availability of data on geographical occurrences, genetic sequences, conservation assessments and DNA barcodes across all phyla and broad functional groups. This reveals a very uneven picture: 44% of species are represented by no record other than their taxonomy, but some species are rich in data. Although these data-rich species are concentrated into a few taxonomic and functional groups, especially vertebrates, data are spread widely across marine animals, with members of all 32 phyla represented in at least one database. By highlighting gaps in current knowledge, our census of marine diversity data helps to prioritize future data collection activities, as well as emphasizing the importance of ongoing sustained observations and archiving of existing data into global repositories. This article is part of the theme issue ‘Integrative research perspectives on marine conservation’.

Paleobiology ◽  
2007 ◽  
Vol 33 (S4) ◽  
pp. 1-55 ◽  
Author(s):  
Steven M. Stanley

According to when they attained high diversity, major taxa of marine animals have been clustered into three groups, the Cambrian, Paleozoic, and Modern Faunas. Because the Cambrian Fauna was a relatively minor component of the total fauna after mid-Ordovician time, the Phanerozoic history of marine animal diversity is largely a matter of the fates of the Paleozoic and Modern Faunas. The fact that most late Cenozoic genera belong to taxa that have been radiating for tens of millions of years indicates that the post-Paleozoic increase in diversity indicated by fossil data is real, rather than an artifact of improvement of the fossil record toward the present.Assuming that ecological crowding produced the so-called Paleozoic plateau for family diversity, various workers have used the logistic equation of ecology to model marine animal diversification as damped exponential increase. Several lines of evidence indicate that this procedure is inappropriate. A plot of the diversity of marine animal genera through time provides better resolution than the plot for families and has a more jagged appearance. Generic diversity generally increased rapidly during the Paleozoic, except when set back by pulses of mass extinction. In fact, an analysis of the history of the Paleozoic Fauna during the Paleozoic Era reveals no general correlation between rate of increase for this fauna and total marine animal diversity. Furthermore, realistically scaled logistic simulations do not mimic the empirical pattern. In addition, it is difficult to imagine how some fixed limit for diversity could have persisted throughout the Paleozoic Era, when the ecological structure of the marine ecosystem was constantly changing. More fundamentally, the basic idea that competition can set a limit for marine animal diversity is incompatible with basic tenets of marine ecology: predation, disturbance, and vagaries of recruitment determine local population sizes for most marine species. Sparseness of predators probably played a larger role than weak competition in elevating rates of diversification during the initial (Ordovician) radiation of marine animals and during recoveries from mass extinctions. A plot of diversification against total diversity for these intervals yields a band of points above the one representing background intervals, and yet this band also displays no significant trend (if the two earliest intervals of the initial Ordovician are excluded as times of exceptional evolutionary innovation). Thus, a distinctive structure characterized the marine ecosystem during intervals of evolutionary radiation—one in which rates of diversification were exceptionally high and yet increases in diversity did not depress rates of diversification.Particular marine taxa exhibit background rates of origination and extinction that rank similarly when compared with those of other taxa. Rates are correlated in this way because certain heritable traits influence probability of speciation and probability of extinction in similar ways. Background rates of origination and extinction were depressed during the late Paleozoic ice age for all major marine invertebrate taxa, but remained correlated. Also, taxa with relatively high background rates of extinction experienced exceptionally heavy losses during biotic crises because background rates of extinction were intensified in a multiplicative manner; decimation of a large group of taxa of this kind in the two Permian mass extinctions established their collective identity as the Paleozoic Fauna.Characteristic rates of origination and extinction for major taxa persisted from Paleozoic into post-Paleozoic time. Because of the causal linkage between rates of origination and extinction, pulses of extinction tended to drag down overall rates of origination as well as overall rates of extinction by preferentially eliminating higher taxa having relatively high background rates of extinction. This extinction/origination ratchet depressed turnover rates for the residual Paleozoic Fauna during the Mesozoic Era. A decline of this fauna's extinction rate to approximately that of the Modern Fauna accounts for the nearly equal fractional losses experienced by the two faunas in the terminal Cretaceous mass extinction.Viewed arithmetically, the fossil record indicates slow diversification for the Modern Fauna during Paleozoic time, followed by much more rapid expansion during Mesozoic and Cenozoic time. When viewed more appropriately as depicting geometric—or exponential—increase, however, the empirical pattern exhibits no fundamental secular change: the background rate of increase for the Modern Fauna—the fauna that dominated post-Paleozoic marine diversity—simply persisted, reflecting the intrinsic origination and extinction rates of constituent taxa. Persistence of this overall background rate supports other evidence that the empirical record of diversification for marine animal life since Paleozoic time represents actual exponential increase. This enduring rate makes it unnecessary to invoke environmental change to explain the post-Paleozoic increase of marine diversity.Because of the resilience of intrinsic rates, an empirically based simulation that entails intervals of exponential increase for the Paleozoic and Modern Faunas, punctuated by mass extinctions, yields a pattern that is remarkably similar to the empirical pattern. It follows that marine animal genera and species will continue to diversify exponentially long into the future, barring disruption of the marine ecosystem by human-induced or natural environmental changes.


2021 ◽  
Vol 7 ◽  
Author(s):  
Phil J. Bouchet ◽  
Deborah Thiele ◽  
Sarah A. Marley ◽  
Kelly Waples ◽  
Frank Weisenberger ◽  
...  

Implementing conservation measures for data-limited species is a fundamental challenge for wildlife managers and policy-makers, and proves difficult for cryptic marine animals occurring in naturally low numbers across remote seascapes. There is currently scant information on the abundance and habitat preferences of Australian snubfin dolphins (Orcaella heinsohni) throughout much of their geographical range, and especially within the Kimberley region of northern Western Australia. Such knowledge gaps curtail rigorous threat assessments on both local and regional scales. To address this and assist future conservation listings, we built the first comprehensive catalog of snubfin dolphin sightings for the Kimberley. We used these data to estimate the species’ extent of occurrence (EOO) and area of occupancy (AOO) along the region’s 7,000 km coastline, following a simple Bootstrap bivariate kernel approach to combine datasets of varying quality and quantify uncertainty. Our catalog consists of 1,597 visual detections of snubfin dolphins made over a period of 17 years (2004–2020) and collated from multiple sources, including online biodiversity repositories, peer-reviewed scientific articles, citizen science programs, as well as dedicated marine wildlife surveys with local Indigenous communities and Ranger groups. Snubfin dolphins were consistently encountered in shallow waters (<21 m depth) close to (<15 km) freshwater inputs, with high detection rates in known hotspots (e.g., Roebuck Bay, Cygnet Bay) as well as in coastal habitats suspected to be suitable (e.g., Prince Regent River and surrounds, King Sound, Doubtful Bay, Napier Broome Bay and the upper Cambridge Gulf). Bootstrap estimates of EOO and AOO were 38,300 (95% CI: 25,451–42,437) km2 and 700 (656–736) km2 respectively, suggesting that snubfin dolphins in the Kimberley are likely Vulnerable under IUCN criteria B2 at a regional scale, in keeping with their global classification. Our study offers insights into the distribution of a vulnerable coastal cetacean species and demonstrates the value of integrating multiple data sources for informing conservation assessments in the face of uncertainty.


2019 ◽  
Vol 1 (1) ◽  
pp. 28-40 ◽  
Author(s):  
Zhiyi Lv ◽  
Qiongxuan Lu ◽  
Bo Dong

AbstractMorphogenesis is a process describing how the shapes of living tissues and bodies are created during development. Living and fossil organisms exhibit enormously diverse tissue architecture and body forms, although the functions of organs are evolutionally conserved. Current knowledge reveals that relatively conserved mechanisms are applied to control development among different species. However, the regulations of morphogenesis are quite diverse in detail. Animals in the ocean display a wide range of diversity of morphology suitable for their seawater environment. Nevertheless, compared with the intensive studies on terrestrial animals, research on marine animal morphogenesis is still insufficient. The increasing genomic data and the recently available gene editing methods, together with the fast development of imaging techniques, quantitative analyses and biophysical models, provide us the opportunities to have a deeper understanding of the principles that drive the diverse morphogenetic processes in marine animals. In this review, we summarize the recent studies of morphogenesis and evolution at molecular, cellular and tissue levels, with a focus on three model marine animals, namely ascidians, sea urchins and sea anemones.


2020 ◽  
Vol 375 (1814) ◽  
pp. 20190446 ◽  
Author(s):  
Silke Laakmann ◽  
Leocadio Blanco-Bercial ◽  
Astrid Cornils

An accurate identification of species and communities is a prerequisite for analysing and recording biodiversity and community shifts. In the context of marine biodiversity conservation and management, this review outlines past, present and forward-looking perspectives on identifying and recording planktonic diversity by illustrating the transition from traditional species identification based on morphological diagnostic characters to full molecular genetic identification of marine assemblages. In this process, the article presents the methodological advancements by discussing progress and critical aspects of the crossover from traditional to novel and future molecular genetic identifications and it outlines the advantages of integrative approaches using the strengths of both morphological and molecular techniques to identify species and assemblages. We demonstrate this process of identifying and recording marine biodiversity on pelagic copepods as model taxon. Copepods are known for their high taxonomic and ecological diversity and comprise a huge variety of behaviours, forms and life histories, making them a highly interesting and well-studied group in terms of biodiversity and ecosystem functioning. Furthermore, their short life cycles and rapid responses to changing environments make them good indicators and core research components for ecosystem health and status in the light of environmental change. This article is part of the theme issue ‘Integrative research perspectives on marine conservation’.


Science ◽  
2020 ◽  
Vol 368 (6489) ◽  
pp. 420-424 ◽  
Author(s):  
R. A. Close ◽  
R. B. J. Benson ◽  
E. E. Saupe ◽  
M. E. Clapham ◽  
R. J. Butler

The global fossil record of marine animals has fueled long-standing debates about diversity change through time and the drivers of this change. However, the fossil record is not truly global. It varies considerably in geographic scope and in the sampling of environments among intervals of geological time. We account for this variability using a spatially explicit approach to quantify regional-scale diversity through the Phanerozoic. Among-region variation in diversity is comparable to variation through time, and much of this is explained by environmental factors, particularly the extent of reefs. By contrast, influential hypotheses of diversity change through time, including sustained long-term increases, have little explanatory power. Modeling the spatial structure of the fossil record transforms interpretations of Phanerozoic diversity patterns and their macroevolutionary explanations. This necessitates a refocus of deep-time diversification studies.


Paleobiology ◽  
2007 ◽  
Vol 33 (sp6) ◽  
pp. 1-55 ◽  
Author(s):  
Steven M. Stanley

Author(s):  
Andrew M. Bush ◽  
Jonathan L. Payne

During the past 541 million years, marine animals underwent three intervals of diversification (early Cambrian, Ordovician, Cretaceous–Cenozoic) separated by nondirectional fluctuation, suggesting diversity-dependent dynamics with the equilibrium diversity shifting through time. Changes in factors such as shallow-marine habitat area and climate appear to have modulated the nondirectional fluctuations. Directional increases in diversity are best explained by evolutionary innovations in marine animals and primary producers coupled with stepwise increases in the availability of food and oxygen. Increasing intensity of biotic interactions such as predation and disturbance may have led to positive feedbacks on diversification as ecosystems became more complex. Important areas for further research include improving the geographic coverage and temporal resolution of paleontological data sets, as well as deepening our understanding of Earth system evolution and the physiological and ecological traits that modulated organismal responses to environmental change. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2019 ◽  
Vol 12 (2) ◽  

Cavite’s remaining upland forest fragments are either remnant from commercial logging activities ca. 25-45 years ago or as a direct result of land conversions for agriculture or human settlements. These forest fragments are very significant because they represent areas where pockets of wildlife habitat still remain. The terrestrial vertebrates are often used to assess animal diversity because they are ideal biological indicators of environmental change and anthropogenic disturbances. The study aimed to determine terrestrial vertebrate diversity, conservation status, and identify major anthropogenic threats in these fragments. Terrestrial vertebrates were surveyed using a combination of strip-transect sampling, time-constrained searches, visual encounter survey (VES), and acoustic encounter survey (AES; for amphibians only), point counts, live trapping and mist netting from October 2014 to March 2016. Species richness and biodiversity estimation were computed using Shannon-Wiener Diversity Index, linear regression, detection and probability modeling using PAST, and confidence limits for nestedness (0.05α) using EpiTools. A total of 175 terrestrial vertebrates were documented and among the vertebrate groups, the birds had the highest observed diversity. Twenty-nine (19 birds, 3 mammals, 3 lizards, and 4 anurans) species are listed as threatened. Habitat loss and degradation due to the conversion of habitats to agricultural and/or residential areas remained to be the most prevalent threat in the remaining forested areas in upland Cavite. Baseline data generated shall be used in the different government biodiversity monitoring activities as the basis for impacts and mitigation and initial planning for the management and conservation of these remaining forest patches.


Author(s):  
Nadège Guiglielmoni ◽  
Ramón Rivera-Vicéns ◽  
Romain Koszul ◽  
Jean-François Flot

Non-vertebrate species represent about ~95% of known metazoan (animal) diversity. They remain to this day relatively unexplored genetically, but understanding their genome structure and function is pivotal for expanding our current knowledge of evolution, ecology and biodiversity. Following the continuous improvements and decreasing costs of sequencing technologies, many genome assembly tools have been released, leading to a significant amount of genome projects being completed in recent years. In this review, we examine the current state of genome projects of non-vertebrate animal species. We present an overview of available sequencing technologies, assembly approaches, as well as pre and post-processing steps, genome assembly evaluation methods, and their application to non-vertebrate animal genomes.


2021 ◽  
Author(s):  
Hollie Booth ◽  
M Said Ramdlan ◽  
Ayesha Hafizh ◽  
Karto Wongsopatty ◽  
Susana Mourato ◽  
...  

Large, long-lived marine animals (‘marine megafauna’) play critical roles in ocean ecosystems, however, they are threatened by overfishing. Technologies and practices that reduce fisheries’ impacts on marine megafauna are well documented, yet less is known about how to encourage their adoption. This is particularly challenging in small-scale fisheries (SSFs), where endangered species can have important consumptive use values. We used a novel combination of methods – scenario interviews with contingent valuation (CV) – to investigate how incentive-based interventions might influence fisher behaviour and reduce mortality of Critically Endangered taxa (hammerhead sharks (Sphyrna spp.) and wedgefish (Rhynchobatus spp.)) in two case study SSFs in Indonesia. Scenario interviews revealed that positive performance-based incentives were almost unanimously supported (98% and 96% of fishers would stop landing hammerheads and wedgefish, respectively). This is in contrast to 1% and 6% under a business as usual control scenario, and 52% and 46% in response to a regulation with a fine. Using CV, we estimated that an incentive-based scheme for catch mitigation of all hammerheads and wedgefish across both sites could cost US$71,620-298,820 annually, and save up to 18,500 hammerheads and 2,140 wedgefish relative to current catch baselines. This study provides empirical evidence that performance-based payments could offer a cost-effective, legitimate and socially-just approach for marine conservation in SSFs, and support “a sustainable and equitable blue economy” and “living in harmony with nature”. This is particularly important with the growing adoption of net-outcome goals for biodiversity, with studies such as this providing the basis for locally-appropriate investment ready schemes for bycatch-neutral seafood supply chains.


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