Does clustering of DNA barcodes agree with botanical classification directly at high taxonomic levels? Trees in French Guiana as a case study

Author(s):  
Mohamed Anwar Abouabdallah ◽  
Nathalie Peyrard ◽  
Alain Franc
PLoS ONE ◽  
2015 ◽  
Vol 10 (6) ◽  
pp. e0129295 ◽  
Author(s):  
Xiao-cui Huang ◽  
Xiu-qin Ci ◽  
John G. Conran ◽  
Jie Li

2020 ◽  
Vol 14 (1) ◽  
pp. 71-77
Author(s):  
Minji Lee ◽  
Sungsoo Choi ◽  
Da-Hye Kim ◽  
Ju Yeon Jung ◽  
Joo-Young Kim ◽  
...  

2009 ◽  
Vol 113 (6-7) ◽  
pp. 713-724 ◽  
Author(s):  
Nicolas Feau ◽  
Agathe Vialle ◽  
Mathieu Allaire ◽  
Philippe Tanguay ◽  
David L. Joly ◽  
...  

PLoS ONE ◽  
2020 ◽  
Vol 15 (8) ◽  
pp. e0237507
Author(s):  
María P. Martín ◽  
Pablo P. Daniëls ◽  
David Erickson ◽  
John L. Spouge

PLoS ONE ◽  
2016 ◽  
Vol 11 (9) ◽  
pp. e0160611 ◽  
Author(s):  
Fan-Hong Wang ◽  
Jin-Mei Lu ◽  
Jun Wen ◽  
Atsushi Ebihara ◽  
De-Zhu Li

2013 ◽  
Vol 145 (6) ◽  
pp. 589-602 ◽  
Author(s):  
Fabio Laurindo da Silva ◽  
Torbjørn Ekrem ◽  
Alaide Aparecida Fonseca-Gessner

AbstractIn this study, we analysed the applicability of DNA barcodes for delimitation of 79 specimens of 13 species of nonbiting midges in the subfamily Tanypodinae (Diptera: Chironomidae) from São Paulo State, Brazil. Our results support DNA barcoding as an excellent tool for species identification and for solving taxonomic conflicts in genusLabrundinia.Molecular analysis of cytochrome c oxidase subunit I (COI) gene sequences yielded taxon identification trees, supporting 13 cohesive species clusters, of which three similar groups were subsequently linked to morphological variation at the larval and pupal stage. Additionally, another cluster previously described by means of morphology was linked to molecular markers. We found a distinct barcode gap, and in some species substantial interspecific pairwise divergences (up to 19.3%) were observed, which permitted identification of all analysed species. The results also indicated that barcodes can be used to associate life stages of chironomids since COI was easily amplified and sequenced from different life stages with universal barcode primers.


Webbia ◽  
2014 ◽  
Vol 69 (1) ◽  
pp. 1-12 ◽  
Author(s):  
Paul M. Peterson ◽  
Konstantin Romaschenko ◽  
Robert J. Soreng
Keyword(s):  

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