Brain Tissue Classification in Magnetic Resonance Images

2015 ◽  
Vol 72 (2) ◽  
Author(s):  
Sapideh Yazdani ◽  
Rubiyah Yusof ◽  
Alireza Karimian ◽  
Amir Hossein Riazi

Automatic segmentation of brain images is a challenging problem due to the complex structure of brain images, as well as to the absence of anatomy models. Brain segmentation into white matter, gray matter, and cerebral spinal fluid, is an important stage for many problems, including the studies in 3-D visualizations for disease detection and surgical planning. In this paper we present a novel fully automated framework for tissue classification of brain in MR Images that is a combination of two techniques: GLCM and SVM, each of which has been customized for the problem of brain tissue segmentation such that the results are more robust than its individual components that is demonstrated through experiments.  The proposed framework has been validated on brainweb dataset of different modalities, with desirable performance in the presence of noise and bias field. To evaluate the performance of the proposed method the Kappa similarity index is computed. Our method achieves higher kappa index (91.5) compared with other methods currently in use. As an application, our method has been used for segmentation of MR images with promising results.

2021 ◽  
Author(s):  
Gaia Amaranta Taberna ◽  
Jessica Samogin ◽  
Dante Mantini

AbstractIn the last years, technological advancements for the analysis of electroencephalography (EEG) recordings have permitted to investigate neural activity and connectivity in the human brain with unprecedented precision and reliability. A crucial element for accurate EEG source reconstruction is the construction of a realistic head model, incorporating information on electrode positions and head tissue distribution. In this paper, we introduce MR-TIM, a toolbox for head tissue modelling from structural magnetic resonance (MR) images. The toolbox consists of three modules: 1) image pre-processing – the raw MR image is denoised and prepared for further analyses; 2) tissue probability mapping – template tissue probability maps (TPMs) in individual space are generated from the MR image; 3) tissue segmentation – information from all the TPMs is integrated such that each voxel in the MR image is assigned to a specific tissue. MR-TIM generates highly realistic 3D masks, five of which are associated with brain structures (brain and cerebellar grey matter, brain and cerebellar white matter, and brainstem) and the remaining seven with other head tissues (cerebrospinal fluid, spongy and compact bones, eyes, muscle, fat and skin). Our validation, conducted on MR images collected in healthy volunteers and patients as well as an MR template image from an open-source repository, demonstrates that MR-TIM is more accurate than alternative approaches for whole-head tissue segmentation. We hope that MR-TIM, by yielding an increased precision in head modelling, will contribute to a more widespread use of EEG as a brain imaging technique.


2016 ◽  
Vol 270 ◽  
pp. 111-123 ◽  
Author(s):  
Sérgio Pereira ◽  
Adriano Pinto ◽  
Jorge Oliveira ◽  
Adriënne M. Mendrik ◽  
José H. Correia ◽  
...  

2016 ◽  
Vol 2016 ◽  
pp. 1-14 ◽  
Author(s):  
Yogita K. Dubey ◽  
Milind M. Mushrif

The study of brain disorders requires accurate tissue segmentation of magnetic resonance (MR) brain images which is very important for detecting tumors, edema, and necrotic tissues. Segmentation of brain images, especially into three main tissue types: Cerebrospinal Fluid (CSF), Gray Matter (GM), and White Matter (WM), has important role in computer aided neurosurgery and diagnosis. Brain images mostly contain noise, intensity inhomogeneity, and weak boundaries. Therefore, accurate segmentation of brain images is still a challenging area of research. This paper presents a review of fuzzyc-means (FCM) clustering algorithms for the segmentation of brain MR images. The review covers the detailed analysis of FCM based algorithms with intensity inhomogeneity correction and noise robustness. Different methods for the modification of standard fuzzy objective function with updating of membership and cluster centroid are also discussed.


2000 ◽  
Vol 19 (12) ◽  
pp. 1179-1187 ◽  
Author(s):  
S. Ruan ◽  
C. Jaggi ◽  
J. Xue ◽  
J. Fadili ◽  
D. Bloyet

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