The complete genome of Chelonus insularis reveals dynamic arrangement of genome components in parasitoid wasps that produce bracoviruses

2022 ◽  
Author(s):  
Meng Mao ◽  
Michael R. Strand ◽  
Gaelen R. Burke
Keyword(s):  
Complete Genome ◽  
Virulence Genes ◽  
Virulence Gene ◽  
Parasitoid Wasp ◽  
Parasitoid Wasps ◽  
Wasp Species ◽  
Larval Parasitoid ◽  
Large Sets ◽  
Organizational Features ◽  
Chelonus Insularis

Bracoviruses (BVs) are endogenized nudiviruses in parasitoid wasps of the microgastroid complex (family Braconidae). Microgastroid wasps have coopted nudivirus genes to produce replication-defective virions that females use to transfer virulence genes to parasitized hosts. The microgastroid complex further consists of six subfamilies and ∼50,000 species but current understanding of BV gene inventories and organization primarily derives from analysis of two wasp species in the subfamily Microgastrinae ( Microplitis demolitor and Cotesia congregata ) that produce M. demolitor BV (MdBV) and C. congregata BV (CcBV). Notably, several genomic features of MdBV and CcBV remain conserved since divergence of M. demolitor and C. congregata ∼53 million years ago (MYA). However, it is unknown whether these conserved traits more broadly reflect BV evolution, because no complete genomes exist for any microgastroid wasps outside of the Microgastrinae. In this regard, the subfamily Cheloninae is of greatest interest because it diverged earliest from the Microgastrinae (∼85 MYA) after endogenization of the nudivirus ancestor. Here, we present the complete genome of Chelonus insularis , which is an egg-larval parasitoid in the Cheloninae that produces C. insularis BV (CinsBV). We report that the inventory of nudivirus genes in C. insularis is conserved but are dissimilarly organized when compared to M. demolitor and C. congregata . Reciprocally, CinsBV proviral segments share organizational features with MdBV and CcBV but virulence gene inventories exhibit almost no overlap. Altogether, our results point to the functional importance of a conserved inventory of nudivirus genes and a dynamic set of virulence genes for the successful parasitism of hosts. Our results also suggest organizational features previously identified in MdBV and CcBV are likely not essential for BV virion formation. Significance Bracoviruses are a remarkable example of virus endogenization, because large sets of genes from a nudivirus ancestor continue to produce virions that thousands of wasp species rely upon to parasitize hosts. Understanding how these genes interact and have been coopted by wasps for novel functions is of broad interest in the study of virus evolution. This manuscript characterizes bracovirus genome components in the parasitoid wasp Chelonus insularis , which together with existing wasp genomes captures a large portion of the diversity among wasp species that produce bracoviruses. Results provide new information about how bracovirus genome components are organized in different wasps while also providing additional insights on key features required for function.

scholarly journals Sight of parasitoid wasps accelerates sexual behavior and upregulates a micropeptide gene in Drosophila

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Shimaa A. M. Ebrahim ◽  
Gaëlle J. S. Talross ◽  
John R. Carlson
Keyword(s):  
Gene Expression ◽  
Nervous System ◽  
Sexual Behavior ◽  
Behavioral Response ◽  
Mutational Analysis ◽  
Parasitoid Wasp ◽  
Parasitoid Wasps ◽  
Wasp Species ◽  
Defensive Responses ◽  
Vast Range

AbstractParasitoid wasps inflict widespread death upon the insect world. Hundreds of thousands of parasitoid wasp species kill a vast range of insect species. Insects have evolved defensive responses to the threat of wasps, some cellular and some behavioral. Here we find an unexpected response of adult Drosophila to the presence of certain parasitoid wasps: accelerated mating behavior. Flies exposed to certain wasp species begin mating more quickly. The effect is mediated via changes in the behavior of the female fly and depends on visual perception. The sight of wasps induces the dramatic upregulation in the fly nervous system of a gene that encodes a 41-amino acid micropeptide. Mutational analysis reveals that the gene is essential to the behavioral response of the fly. Our work provides a foundation for further exploration of how the activation of visual circuits by the sight of a wasp alters both sexual behavior and gene expression.

scholarly journals Variation in the diversity and richness of parasitoid wasps based on sampling effort

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4642 ◽  
Author(s):  
Thomas E. Saunders ◽  
Darren F. Ward
Keyword(s):  
Species Richness ◽  
Austral Summer ◽  
Parasitoid Wasp ◽  
Parasitoid Wasps ◽  
Sampling Effort ◽  
Summer Period ◽  
Wasp Species ◽  
The Cost ◽  
Number Of Individuals ◽  
The Relationship

Parasitoid wasps are a mega-diverse, ecologically dominant, but poorly studied component of global biodiversity. In order to maximise the efficiency and reduce the cost of their collection, the application of optimal sampling techniques is necessary. Two sites in Auckland, New Zealand were sampled intensively to determine the relationship between sampling effort and observed species richness of parasitoid wasps from the family Ichneumonidae. Twenty traps were deployed at each site at three different times over the austral summer period, resulting in a total sampling effort of 840 Malaise-trap-days. Rarefaction techniques and non-parametric estimators were used to predict species richness and to evaluate the variation and completeness of sampling. Despite an intensive Malaise-trapping regime over the summer period, no asymptote of species richness was reached. At best, sampling captured two-thirds of parasitoid wasp species present. The estimated total number of species present depended on the month of sampling and the statistical estimator used. Consequently, the use of fewer traps would have caught only a small proportion of all species (one trap 7–21%; two traps 13–32%), and many traps contributed little to the overall number of individuals caught. However, variation in the catch of individual Malaise traps was not explained by seasonal turnover of species, vegetation or environmental conditions surrounding the trap, or distance of traps to one another. Overall the results demonstrate that even with an intense sampling effort the community is incompletely sampled. The use of only a few traps and/or for very short periods severely limits the estimates of richness because (i) fewer individuals are caught leading to a greater number of singletons; and (ii) the considerable variation of individual traps means some traps will contribute few or no individuals. Understanding how sampling effort affects the richness and diversity of parasitoid wasps is a useful foundation for future studies.

Comparing composition and diversity of parasitoid wasps and plants in an Amazonian rain-forest mosaic

2006 ◽  
Vol 22 (2) ◽  
pp. 167-176 ◽  
Author(s):  
Ilari E. Sääksjärvi ◽  
Kalle Ruokolainen ◽  
Hanna Tuomisto ◽  
Samuli Haataja ◽  
Paul V. A. Fine ◽  
...  
Keyword(s):  
Species Richness ◽  
Species Composition ◽  
Plant Species ◽  
Rain Forest ◽  
Parasitoid Wasp ◽  
Parasitoid Wasps ◽  
Lowland Rain Forest ◽  
Wasp Species ◽  
Weak Support ◽  
Forest Mosaic

Local species richness and between-site similarity in species composition of parasitoid wasps (Hymenoptera: Ichneumonidae; Pimplinae and Rhyssinae) were correlated with those of four plant groups (pteridophytes, Melastomataceae, Burseraceae and Arecaceae) in a western Amazonian lowland rain forest mosaic. The mosaic structure of the forest was related to variation in soils within the non-inundated terrain. Significant matrix correlation between patterns in parasitoid wasp species composition and plant species composition was found. Most of the overall correlation was due to idiobiont parasitoids of weakly concealed hosts, which attack host larvae and pupae in exposed situations, with two of the four ecologically defined parasitoid groups showing no correlation at all. A positive correlation between the number of plant species and the number of Pimplinae and Rhyssinae species at a site was found when the latter was corrected for collecting effort. Consequently, the degree of floristic difference between sites may be indicative of the difference in species composition of ichneumonids, and the species richness of plants may serve as a predictor of the species richness of parasitoid wasps. Although these results were obtained in a mosaic including structurally and floristically clearly different types of rain forest, the correlation coefficients were relatively low, and the present results lend only weak support to the idea of using plant distributions as indicators of animal distributions.

scholarly journals Optimising Capture Methods for the Evaluation of Parasitoid Wasp Diversity

2018 ◽  
Author(s):  
Thomas Edward Saunders
Keyword(s):  
Species Richness ◽  
New Species ◽  
New Zealand ◽  
Parasitoid Wasp ◽  
Parasitoid Wasps ◽  
Sampling Effort ◽  
Optimal Sampling ◽  
Wasp Species ◽  
Use Of Resources ◽  
The Relationship

Parasitoid wasps are mega-diverse, ecologically dominant, but poorly studied components of global biodiversity. Despite their intensive application within pest management as biocontrol agents, little is known about native species. To understand their basic biology they must be collected in sampling programs. However, invertebrate surveys are increasingly subject to funding and time constraints that often preclude complete faunal inventories. In order to maximise the efficiency and reduce the cost of their collection, the application of optimal sampling techniques within a Rapid Biodiversity Assessment framework is proposed. Two sites in the Waitakere Ranges were sampled three times over the summer. An intensive sampling effort of 840 Malaise-trap-days over a three month period was used to determine the relationship between sampling effort and observed species richness. Rarefaction techniques and non-parametric estimators were used to predict true species richness and to evaluate the completeness of sampling. Results show that an intensive Malaise-trapping regime over the summer can capture two-thirds of parasitoid wasp species present. Sampling recommendations are provided to guide optimal usage of Malaise traps for both ecological studies and faunal inventories. Modern taxonomic methods are reviewed and a new species of parasitoid wasp is described, representing the first New Zealand species from the genus Lusius (Ichneumonidae: Ichneumoninae). Morphological measurements confirm the new species represents a significant range expansion for the genus. Greater collaboration between ecologists and taxonomists is encouraged, in order to make more efficient use of resources, data, and expertise unique to each discipline. This is the first study to investigate the relationship between sampling effort and parasitoid wasp diversity in New Zealand. It shows that very high sampling effort fails to catch all species present. Parasitoid wasps are known to be keystone species that show promise as indicators of environmental quality and as surrogates for the diversity of other taxa. The development of optimal sampling strategies will therefore provide an important foundation for their future study.

scholarly journals Sight of parasitoid wasps accelerates sexual behavior and upregulates a micropeptide gene in Drosophila

2020 ◽  
Author(s):  
Shimaa Ebrahim ◽  
Gaëlle Talross ◽  
John R. Carlson
Keyword(s):  
Sexual Behavior ◽  
Mutational Analysis ◽  
Genetic Model ◽  
Insect Pests ◽  
Parasitoid Wasp ◽  
Parasitoid Wasps ◽  
Wasp Species ◽  
Defensive Responses ◽  
Vast Range ◽  
Control Insect

Abstract Parasitoid wasps inflict widespread death upon the insect world. Hundreds of thousands of parasitoid wasp species kill a vast range of insect species, and many such wasps are used globally to control insect pests. Insects have evolved defensive responses to the threat of wasps, some cellular and some behavioral. However, the nature of these responses and the mechanisms that underlie them await further exploration. Here we find an unexpected response of adult Drosophila to the presence of certain parasitoid wasps: accelerated mating behavior. Flies exposed to certain wasp species begin mating more quickly. The effect is mediated via changes in the behavior of the female fly and depends on visual perception. The sight of wasps induces the dramatic upregulation in the fly nervous system of a gene that encodes a 41-amino acid micropeptide. Mutational analysis reveals that the gene is essential to the behavioral response of the fly. Our work provides a foundation in a genetic model system for further exploration of how the activation of visual circuits by the sight of a parasitoid wasp alters both sexual behavior and gene expression.

scholarly journals A horizontally transferred autonomous Helitron became a full polydnavirus segment inCotesia vestalis

2017 ◽  
Author(s):  
Pedro Heringer ◽  
Guilherme B. Dias ◽  
Gustavo C. S. Kuhn
Keyword(s):  
Transposable Element ◽  
Virulence Gene ◽  
Parasitoid Wasp ◽  
Unknown Origin ◽  
Wasp Species ◽  
Cotesia Vestalis ◽  
The Family ◽  
Gene Vectors ◽  
Horizontal Transfers ◽  
Lepidopteran Host

ABSTRACTBracoviruses associate symbiotically with thousands of parasitoid wasp species in the family Braconidae, working as virulence gene vectors, and allowing the development of wasp larvae within hosts. These viruses are composed by multiple DNA circles that are packaged into infective particles and injected together with wasp's eggs during parasitization. One of the viral segments ofCotesia vestalisbracovirus contains a gene that has been previously described as a helicase of unknown origin. Here we demonstrate that this gene is a Rep/Helicase from an intact Helitron transposable element that covers the viral segment almost entirely. We also provide evidence that this element underwent at least two horizontal transfers, which appear to have occurred consecutively: first from a Drosophila host ancestor to the genome of the parasitoid waspCotesia vestalisand its bracovirus, and then fromC. vestalisto a lepidopteran host (Bombyx mori). Our results reinforce the idea of parasitoid wasps as frequent agents of horizontal transfers in eukaryotes. Additionally, this Helitron-bracovirus segment is the first example of a transposable element that effectively became a whole viral circle.

Vibrio harveyi virulence gene expression in vitro and in vivo during infection in black tiger shrimp Penaeus monodon

2020 ◽  
Vol 139 ◽  
pp. 153-160
Author(s):  
S Peeralil ◽  
TC Joseph ◽  
V Murugadas ◽  
PG Akhilnath ◽  
VN Sreejith ◽  
...  
Keyword(s):  
Gene Expression ◽  
Virulence Genes ◽  
Vibrio Harveyi ◽  
Penaeus Monodon ◽  
Challenge Test ◽  
Virulence Gene ◽  
Economic Losses ◽  
Virulence Gene Expression

Luminescent Vibrio harveyi is common in sea and estuarine waters. It produces several virulence factors and negatively affects larval penaeid shrimp in hatcheries, resulting in severe economic losses to shrimp aquaculture. Although V. harveyi is an important pathogen of shrimp, its pathogenicity mechanisms have yet to be completely elucidated. In the present study, isolates of V. harveyi were isolated and characterized from diseased Penaeus monodon postlarvae from hatcheries in Kerala, India, from September to December 2016. All 23 tested isolates were positive for lipase, phospholipase, caseinase, gelatinase and chitinase activity, and 3 of the isolates (MFB32, MFB71 and MFB68) showed potential for significant biofilm formation. Based on the presence of virulence genes, the isolates of V. harveyi were grouped into 6 genotypes, predominated by vhpA+ flaB+ ser+ vhh1- luxR+ vopD- vcrD+ vscN-. One isolate from each genotype was randomly selected for in vivo virulence experiments, and the LD50 ranged from 1.7 ± 0.5 × 103 to 4.1 ± 0.1 × 105 CFU ml-1. The expression of genes during the infection in postlarvae was high in 2 of the isolates (MFB12 and MFB32), consistent with the result of the challenge test. However, in MFB19, even though all genes tested were present, their expression level was very low and likely contributed to its lack of virulence. Because of the significant variation in gene expression, the presence of virulence genes alone cannot be used as a marker for pathogenicity of V. harveyi.

scholarly journals Distribution of virulence genes and SCCmec types among methicillin-resistant Staphylococcus aureus of clinical and environmental origin: a study from community of Assam, India

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Deepshikha Bhowmik ◽  
Shiela Chetri ◽  
Bhaskar Jyoti Das ◽  
Debadatta Dhar Chanda ◽  
Amitabha Bhattacharjee
Keyword(s):  
Staphylococcus Aureus ◽  
Virulence Genes ◽  
Methicillin Resistant Staphylococcus Aureus ◽  
Virulence Gene ◽  
Type I ◽  
Methicillin Resistant ◽  
Type Iv ◽  
Clinical Community ◽  
Type V ◽  
Sccmec Types

Abstract Objective This study was designed to discover the dissemination of virulence genes in Methicillin-resistant Staphylococcus aureus from clinical, community and environmental settings. Results This study includes 1165 isolates collected from hospital, community and environmental settings. Among them sixty three were confirmed as MRSA with varied SCCmec types viz; type I, type II, type III, type IV, type V, type VI, type VII, type VIII and type XII. The virulence gene such as sea (n = 54), seb (n = 21), eta (n = 27), etb (n = 2), cna (n = 24), ica (n = 2) and tst (n = 30) was also revealed from this study. The study underscores coexistence of resistance cassette and virulence genes among clinical and environment isolates which is first of its kind from this part of the world.

scholarly journals Carbapenem-Resistant Pseudomonas aeruginosa Strains-Distribution of the Essential Enzymatic Virulence Factors Genes

Antibiotics ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 8
Author(s):  
Tomasz Bogiel ◽  
Małgorzata Prażyńska ◽  
Joanna Kwiecińska-Piróg ◽  
Agnieszka Mikucka ◽  
Eugenia Gospodarek-Komkowska
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Alkaline Protease ◽  
Virulence Genes ◽  
Virulence Gene ◽  
Hospital Environment ◽  
Gene Encoding ◽  
Virulence Gene Expression ◽  
Carbapenem Resistant ◽  
Antimicrobial Resistance Genes ◽  
The Difference

Pseudomonas aeruginosa is one of the most commonly isolated bacteria from clinical specimens, with increasing isolation frequency in nosocomial infections. Herein, we investigated whether antimicrobial-resistant P. aeruginosa strains, e.g., metallo-beta-lactamase (MBL)-producing isolates, may possess a reduced number of virulence genes, resulting from appropriate genome management to adapt to a changing hospital environment. Hospital conditions, such as selective pressure, may lead to the replacement of virulence genes by antimicrobial resistance genes that are crucial to survive under current conditions. The study aimed to compare, using PCR, the frequency of the chosen enzymatic virulence factor genes (alkaline protease-aprA, elastase B-lasB, neuraminidases-nan1 and nan2, and both variants of phospholipase C-plcH and plcN) to MBL distribution among 107 non-duplicated carbapenem-resistant P. aeruginosa isolates. The gene encoding alkaline protease was noted with the highest frequency (100%), while the neuraminidase-1 gene was observed in 37.4% of the examined strains. The difference in lasB and nan1 prevalence amongst the MBL-positive and MBL-negative strains, was statistically significant. Although P. aeruginosa virulence is generally more likely determined by the complex regulation of the virulence gene expression, herein, we found differences in the prevalence of various virulence genes in MBL-producers.

scholarly journals Molecular characteristics and virulence gene profiles of Staphylococcus aureus isolates in Hainan, China

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Xuehan Li ◽  
Tao Huang ◽  
Kai Xu ◽  
Chenglin Li ◽  
Yirong Li
Keyword(s):  
Staphylococcus Aureus ◽  
Antibiotic Resistance ◽  
Resistance Genes ◽  
Virulence Genes ◽  
Mainland China ◽  
Geographical Location ◽  
Antibiotic Resistance Genes ◽  
Virulence Gene ◽  
Molecular Characteristics ◽  
Staphylococcal Protein A

Abstract Background There have been no reports regarding the molecular characteristics, virulence features, and antibiotic resistance profiles of Staphylococcus aureus (S. aureus) from Hainan, the southernmost province of China. Methods Two hundred twenty-seven S. aureus isolates, consisting of 76 methicillin-resistant S. aureus (MRSA) and 151 methicillin-susceptible S. aureus (MSSA), were collected in 2013–2014 and 2018–2019 in Hainan, and investigated for their molecular characteristics, virulence genes, antibiotic resistance profiles and main antibiotic resistance genes. Results Forty sequence types (STs) including three new STs (ST5489, ST5492 and ST5493), and 79 Staphylococcal protein A (spa) types were identified based on multilocus sequence typing (MLST) and spa typing, respectively. ST398 (14.1%, 32/227) was found to be the most prevalent, and the prevalence of ST398-MSSA increased significantly from 2013 to 2014 (5.5%, 5/91) to 2018–2019 (18.4%, 25/136). Seventy-six MRSA isolates were subject to staphylococcus chromosomal cassette mec (SCCmec) typing. SCCmec-IVa was the predominant SCCmec type, and specifically, ST45-SCCmec IVa, an infrequent type in mainland China, was predominant in S. aureus from Hainan. The antibiotic resistance profiles and antibiotic resistance genes of S. aureus show distinctive features in Hainan. The resistant rates of the MRSA isolates to a variety of antibiotics were significantly higher than those of the MSSA isolates. The predominant erythromycin and tetracycline resistance genes were ermC (90.1%, 100/111) and tetK (91.8%, 78/85), respectively. Eleven virulence genes, including the Panton-Valentine leukocidin (pvl) and eta, were determined, and the frequency of eta and pvl were found to be 57.3 and 47.6%. Such high prevalence has never been seen in mainland China before. Conclusion S. aureus isolates in Hainan have unique molecular characteristics, virulence gene and antibiotic resistance profiles, and main antibiotic resistance genes which may be associated with the special geographical location of Hainan and local trends in antibiotic use.

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