scholarly journals Genome Sequence of Halobacterium sp. Strain BOL4-2, Isolated and Cultured from Salar de Uyuni, Bolivia

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Priya DasSarma ◽  
Brian P. Anton ◽  
Hedvig A. L. von Ehrenheim ◽  
Fabiana L. Martinez ◽  
Daniel Guzmán ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Smrt Sequencing ◽  
Salt Flat

Halobacterium sp. strain BOL4-2 was isolated from an Andean salt flat, Salar de Uyuni, in Bolivia. Single-molecule real-time (SMRT) sequencing revealed a 2.4-Mbp genome with a 2.0-Mbp chromosome and four plasmids (2 to 299 kb). Its isolation from an environment experiencing multiple extremes makes the strain interesting for astrobiology.

scholarly journals Complete Genome Sequence and Methylome Analysis ofBacillus globigiiATCC 49760

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Richard D. Morgan
Keyword(s):  
Bacillus Subtilis ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Restriction Enzymes ◽  
Complete Sequence ◽  
Smrt Sequencing ◽  
Methylome Analysis

Bacillus subtilis(Ehrenburg) Cohn ATCC 49760, deposited asBacillus globigii, is the source strain for the restriction enzymes BglI and BglII. Its complete sequence and full methylome were determined using single-molecule real-time (SMRT) sequencing.

scholarly journals Genome Sequence of Salarchaeum sp. Strain JOR-1, an Extremely Halophilic Archaeon from the Dead Sea

2020 ◽  
Vol 9 (5) ◽  
Author(s):  
Brian P. Anton ◽  
Priya DasSarma ◽  
Fabiana L. Martinez ◽  
Satyajit L. DasSarma ◽  
Mohammad Al Madadha ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
East Coast ◽  
Dead Sea ◽  
Halophilic Archaeon ◽  
Smrt Sequencing ◽  
Circular Chromosome ◽  
Extremely Halophilic Archaeon ◽  
The Dead

An extremely halophilic archaeon, Salarchaeum sp. strain JOR-1, was isolated from the east coast of the Dead Sea, Kingdom of Jordan, and sequenced using single-molecule real-time (SMRT) sequencing. The GC-rich 2.5-Mbp genome was composed of a circular chromosome and a megaplasmid. The genome contained 2,633 genes and was incorporated into HaloWeb (https://halo.umbc.edu/).

scholarly journals Complete Genome Sequence of Brachybacterium sp. Strain SGAir0954, Isolated from Singapore Air

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Phu Pwint Thin Hlaing ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Smrt Sequencing ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Long Reads

Brachybacterium sp. strain SGAir0954 was isolated from tropical air collected in Singapore, and its genome was sequenced and assembled using long reads generated by single-molecule real-time (SMRT) sequencing. The complete genome has a size of 3.41 Mb and consists of 2,955 protein coding genes, 50 tRNAs, and 9 rRNAs.

scholarly journals Cytogenomic identification and long-read single molecule real-time (SMRT) sequencing of a Bardet–Biedl Syndrome 9 (BBS9) deletion

2018 ◽  
Vol 3 (1) ◽  
Author(s):  
Jennifer Reiner ◽  
Laura Pisani ◽  
Wanqiong Qiao ◽  
Ram Singh ◽  
Yao Yang ◽  
...  
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Smrt Sequencing ◽  
Bardet Biedl Syndrome ◽  
Long Read

scholarly journals Complete and Assembled Genome Sequence of Lactobacillus plantarum RI-113 Isolated from Salami

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Raffael C. Inglin ◽  
Leo Meile ◽  
Jochen Klumpp ◽  
Marc J. A. Stevens
Keyword(s):  
Real Time ◽  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type

ABSTRACT We present here the complete genome sequence of Lactobacillus plantarum RI-113, a strain isolated from salami, which was determined using single-molecule real-time sequencing.

scholarly journals Complete Genome Sequence of Mycobacterium avium , Isolated from Commercial Domestic Pekin Ducks ( Anas platyrhynchos domestica ), Determined Using PacBio Single-Molecule Real-Time Technology

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Xiao-Heng Song ◽  
Hong-Xi Chen ◽  
Wang-Shu Zhou ◽  
Jiang-Bo Wang ◽  
Ma-Feng Liu ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virulent Strain ◽  
Domestic Ducks ◽  
Pekin Ducks ◽  
First Time

Mycobacterium avium is an important pathogenic bacterium in birds and has never, to our knowledge, reported to be isolated from domestic ducks. We present here the complete genome sequence of a virulent strain of Mycobacterium avium , isolated from domestic Pekin ducks for the first time, which was determined by PacBio single-molecule real-time technology.

Application of PacBio Single Molecule Real-Time (SMRT) sequencing in bacterial source tracking analysis during milk powder production

Food Control ◽  
2018 ◽  
Vol 93 ◽  
pp. 226-234 ◽  
Author(s):  
Jicheng Wang ◽  
Yi Zheng ◽  
Xiaoxia Xi ◽  
Qiangchuan Hou ◽  
Haiyan Xu ◽  
...  
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Milk Powder ◽  
Source Tracking ◽  
Smrt Sequencing ◽  
Bacterial Source Tracking ◽  
Powder Production

scholarly journals Draft Genome Sequences of Two Uncultured Armatimonadetes Associated with a Microcystis sp. (Cyanobacteria) Isolate

2017 ◽  
Vol 5 (40) ◽  
Author(s):  
Jason N. Woodhouse ◽  
A. Katharina Makower ◽  
Hans-Peter Grossart ◽  
Elke Dittmann
Keyword(s):  
Real Time ◽  
Single Molecule ◽  
Type Strain ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Eutrophic Lake ◽  
Smrt Sequencing ◽  
Genome Sequences ◽  
Terrestrial Environments ◽  
Strain Genome

ABSTRACT Two genome sequences of the phylum Armatimonadetes, derived from terrestrial environments, have been previously described. Here, two additional Armatimonadetes genome sequences were obtained via single-molecule real-time (SMRT) sequencing of an enrichment culture of the bloom-forming cyanobacterium Microcystis sp. isolated from a eutrophic lake (Brandenburg, Germany). The genomes are most closely affiliated with the class Fimbriimonadales, although they are smaller than the 5.6-Mbp type strain genome.

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