Semantic Information Retrieval on Medical Texts

2022 ◽  
Vol 54 (7) ◽  
pp. 1-38
Author(s):  
Lynda Tamine ◽  
Lorraine Goeuriot

The explosive growth and widespread accessibility of medical information on the Internet have led to a surge of research activity in a wide range of scientific communities including health informatics and information retrieval (IR). One of the common concerns of this research, across these disciplines, is how to design either clinical decision support systems or medical search engines capable of providing adequate support for both novices (e.g., patients and their next-of-kin) and experts (e.g., physicians, clinicians) tackling complex tasks (e.g., search for diagnosis, search for a treatment). However, despite the significant multi-disciplinary research advances, current medical search systems exhibit low levels of performance. This survey provides an overview of the state of the art in the disciplines of IR and health informatics, and bridging these disciplines shows how semantic search techniques can facilitate medical IR. First,we will give a broad picture of semantic search and medical IR and then highlight the major scientific challenges. Second, focusing on the semantic gap challenge, we will discuss representative state-of-the-art work related to feature-based as well as semantic-based representation and matching models that support medical search systems. In addition to seminal works, we will present recent works that rely on research advancements in deep learning. Third, we make a thorough cross-model analysis and provide some findings and lessons learned. Finally, we discuss some open issues and possible promising directions for future research trends.

2021 ◽  
Vol 55 (1) ◽  
pp. 1-9
Author(s):  
Ingo Frommholz ◽  
Guillaume Cabanac ◽  
Philipp Mayr ◽  
Suzan Verberne

The 11th Bibliometric-enhanced Information Retrieval Workshop (BIR 2021) was held online on April 1st, 2021, at ECIR 2021 as a virtual event. The interdisciplinary BIR workshop series aims to bring together researchers from different communities, especially Scientometrics/Bibliometrics and Information Retrieval. We report on the 11th BIR, its invited talks and accepted papers. Lessons learned from BIR 2021 are discussed and potential future research questions identified that position Bibliometric-enhanced IR as an exciting special yet important branch of IR research.


Webology ◽  
2021 ◽  
Vol 18 (SI02) ◽  
pp. 21-31
Author(s):  
P. Mahalakshmi ◽  
N. Sabiyath Fathima

Basically keywords are used to index and retrieve the documents for the user query in a conventional information retrieval systems. When more than one keywords are used for defining the single concept in the documents and in the queries, inaccurate and incomplete results were produced by keyword based retrieval systems. Additionally, manual interventions are required for determining the relationship between the related keywords in terms of semantics to produce the accurate results which have paved the way for semantic search. Various research work has been carried out on concept based information retrieval to tackle the difficulties that are caused by the conventional keyword search and the semantic search systems. This paper aims at elucidating various representation of text that is responsible for retrieving relevant search results, approaches along with the evaluation that are carried out in conceptual information retrieval, the challenges faced by the existing research to expatiate requirements of future research. In addition, the conceptual information that are extracted from the different sources for utilizing the semantic representation by the existing systems have been discussed.


2020 ◽  
Vol 21 (4) ◽  
pp. 438-477
Author(s):  
Bryan R Early ◽  
Menevis Cilizoglu

Abstract Policymakers employ economic sanctions to deal with a wide range of international challenges, making them an indispensable foreign policy tool. While scholarship on sanctions has tended to focus on the factors affecting their success, newer research programs have emerged that explore the reasons for why sanctions are threatened and initiated, the ways they are designed and enforced, and their consequences. This scholarship has yielded a wealth of new insights into how economic sanctions work, but most of those insights are based on sanctions observations from the 20th Century. The ways that policymakers employ sanctions have fundamentally changed over the past two decades, though, raising concerns about whether historically derived insights are still relevant to contemporary sanctions policies. In this forum, the contributors discuss the scholarly and policy-relevant insights of existing research on sanctions and then explore what gaps remain in our knowledge and new trends in sanctions policymaking. This forum will inform readers on the state of the art in sanctions research and propose avenues for future research.


2020 ◽  
Vol 17 (4) ◽  
pp. 507-514
Author(s):  
Sidra Sajid ◽  
Ali Javed ◽  
Aun Irtaza

Speech and music segregation from a single channel is a challenging task due to background interference and intermingled signals of voice and music channels. It is of immense importance due to its utility in wide range of applications such as music information retrieval, singer identification, lyrics recognition and alignment. This paper presents an effective method for speech and music segregation. Considering the repeating nature of music, we first detect the local repeating structures in the signal using a locally defined window for each segment. After detecting the repeating structure, we extract them and perform separation using a soft time-frequency mask. We apply an ideal binary mask to enhance the speech and music intelligibility. We evaluated the proposed method on the mixtures set at -5 dB, 0 dB, 5 dB from Multimedia Information Retrieval-1000 clips (MIR-1K) dataset. Experimental results demonstrate that the proposed method for speech and music segregation outperforms the existing state-of-the-art methods in terms of Global-Normalized-Signal-to-Distortion Ratio (GNSDR) values


2021 ◽  
Vol 11 (21) ◽  
pp. 9812
Author(s):  
Norziana Jamil ◽  
Qais Saif Qassim ◽  
Farah Aqilah Bohani ◽  
Muhamad Mansor ◽  
Vigna Kumaran Ramachandaramurthy

The infrastructure of and processes involved in a microgrid electrical system require advanced technology to facilitate connection among its various components in order to provide the intelligence and automation that can benefit users. As a consequence, the microgrid has vulnerabilities that can expose it to a wide range of attacks. If they are not adequately addressed, these vulnerabilities may have a destructive impact on a country’s critical infrastructure and economy. While the impact of exploiting vulnerabilities in them is understood, research on the cybersecurity of microgrids is inadequate. This paper provides a comprehensive review of microgrid cybersecurity. In particular, it (1) reviews the state-of-the-art microgrid electrical systems, communication protocols, standards, and vulnerabilities while highlighting prevalent solutions to cybersecurity-related issues in them; (2) provides recommendations to enhance the security of these systems by segregating layers of the microgrid, and (3) identifies the gap in research in the area, and suggests directions for future work to enhance the cybersecurity of microgrids.


Author(s):  
Salma Bradai ◽  
Sofien Khemakhem ◽  
Mohamed Jmaiel

Mobile services have gained in importance for their ability to be consumed by mobile users regardless of their location. Mobile consumers are exposed to a large pool of services such as location-based applications, medical information, financial management, investments, and more. However, mobile service discovery needs further research to efficiently and effectively support mobility-related constraints such as availability, heterogeneity, and resource constrained devices. In this chapter, the authors define several criteria relating to mobile service discovery and categorize state-of-the-art service discovery approaches according to those criteria while paying particular attention to architectural choices, service description, and service discovery using semantic and reasoning techniques. The authors evaluate the approaches to identify their advantages and shortcomings and propose guidelines for future research for service discovery in mobile environments.


2018 ◽  
Vol 25 (5) ◽  
pp. 530-537 ◽  
Author(s):  
Honghan Wu ◽  
Giulia Toti ◽  
Katherine I Morley ◽  
Zina M Ibrahim ◽  
Amos Folarin ◽  
...  

Abstract Objective Unlocking the data contained within both structured and unstructured components of electronic health records (EHRs) has the potential to provide a step change in data available for secondary research use, generation of actionable medical insights, hospital management, and trial recruitment. To achieve this, we implemented SemEHR, an open source semantic search and analytics tool for EHRs. Methods SemEHR implements a generic information extraction (IE) and retrieval infrastructure by identifying contextualized mentions of a wide range of biomedical concepts within EHRs. Natural language processing annotations are further assembled at the patient level and extended with EHR-specific knowledge to generate a timeline for each patient. The semantic data are serviced via ontology-based search and analytics interfaces. Results SemEHR has been deployed at a number of UK hospitals, including the Clinical Record Interactive Search, an anonymized replica of the EHR of the UK South London and Maudsley National Health Service Foundation Trust, one of Europe’s largest providers of mental health services. In 2 Clinical Record Interactive Search–based studies, SemEHR achieved 93% (hepatitis C) and 99% (HIV) F-measure results in identifying true positive patients. At King’s College Hospital in London, as part of the CogStack program (github.com/cogstack), SemEHR is being used to recruit patients into the UK Department of Health 100 000 Genomes Project (genomicsengland.co.uk). The validation study suggests that the tool can validate previously recruited cases and is very fast at searching phenotypes; time for recruitment criteria checking was reduced from days to minutes. Validated on open intensive care EHR data, Medical Information Mart for Intensive Care III, the vital signs extracted by SemEHR can achieve around 97% accuracy. Conclusion Results from the multiple case studies demonstrate SemEHR’s efficiency: weeks or months of work can be done within hours or minutes in some cases. SemEHR provides a more comprehensive view of patients, bringing in more and unexpected insight compared to study-oriented bespoke IE systems. SemEHR is open source, available at https://github.com/CogStack/SemEHR.


Author(s):  
Daniel G. Morrow ◽  
H. Chad Lane ◽  
Wendy A. Rogers

Objective We examined the potential of conversational agents (CAs) to support older adults’ self-care related to chronic illness in light of lessons learned from decades of pedagogical agent research, which investigates the impact and efficacy of CAs for a wide range of learners. Background The role of CAs in education (i.e., pedagogical agents) has been long studied, but their potential for supporting self-care has received less attention, especially for older adults. Methods We reviewed work on pedagogical agents and considered how it informs the design of CAs for older adults. We propose a framework for designing CAs to support older adult self-care, which organizes a review of work in this area and integration with the pedagogical agent literature. Results Our review of the pedagogical agent literature revealed an evolution from teaching machines to interactive, social systems that influence student motivational as well as learning outcomes. To integrate this review with work on CAs and self-care, we developed a framework that specifies how self-care goals evolve with stages of an illness, communication goals that support self-care at each stage, patient needs, and requirements for CAs to support these needs. The review identified an agenda for future research on CA functions and features that help older adults accept need for self-care, establish self-care, and sustain self-care over time. Conclusions Integrating insights from the pedagogical agent literature with research on developing CAs for self-care defines an agenda for developing and evaluating CAs to help older adults manage illness.


F1000Research ◽  
2020 ◽  
Vol 9 ◽  
pp. 136
Author(s):  
Rutger A. Vos ◽  
Toshiaki Katayama ◽  
Hiroyuki Mishima ◽  
Shin Kawano ◽  
Shuichi Kawashima ◽  
...  

We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web.


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