Phylogenetic analysis and trait evolution of ant cocoons

2021 ◽  
pp. 1-18
Author(s):  
Jordan A. Greer ◽  
Corrie S. Moreau
Keyword(s):  
Complex Traits ◽  
Transition Rate ◽  
Sister Group ◽  
Ancestral State ◽  
Relaxed Selection ◽  
Metapleural Gland ◽  
Correlated Evolution ◽  
Rates Of Evolution ◽  
Sister Clade ◽  
The Impact

Abstract Most ant species have lost the ability to spin cocoons. To explore the evolution of cocoon loss within Formicidae, we perform an ancestral state reconstruction of cocooned pupae across a genus-level phylogeny and use a sister clade analysis to determine the impact of cocoon evolution on ant speciation. Then, we fit models of correlated evolution between cocoon status and several other organismal traits. We find that the re-emergence of cocoons is rare and that “naked” lineages display an increased rate of speciation in 5 out of 9 sister group comparisons. Models of correlated evolution with cocoon status were favored for metapleural gland and worker polymorphism. Metapleural gland favored rates of evolution were inconclusive, while worker polymorphism displayed a higher transition rate towards polymorphism coupled with cocoon loss. These results suggest that cocoon loss may allow for other complex traits to develop and may represent a novel example of relaxed selection.

scholarly journals PSI-40 Two mitochondrial lineages revealed in North American yak

2020 ◽  
Vol 98 (Supplement_4) ◽  
pp. 477-477
Author(s):  
Leah K Treffer ◽  
Edward S Rice ◽  
Anna M Fuller ◽  
Samuel Cutler ◽  
Jessica L Petersen
Keyword(s):  
Sequence Data ◽  
Haplotype Network ◽  
Ovis Aries ◽  
Similar Species ◽  
Nucleotide Polymorphisms ◽  
Mt Dna ◽  
Protein Coding ◽  
Sister Clade ◽  
Mtdna Sequence ◽  
The Impact

Abstract Domestic yak (Bos grunniens) are bovids native to the Asian Qinghai-Tibetan Plateau. Studies of Asian yak have revealed that introgression with domestic cattle has contributed to the evolution of the species. When imported to North America (NA), some hybridization with B. taurus did occur. The objective of this study was to use mitochondrial (mt) DNA sequence data to better understand the mtDNA origin of NA yak and their relationship to Asian yak and related species. The complete mtDNA sequence of 14 individuals (12 NA yak, 1 Tibetan yak, 1 Tibetan B. indicus) was generated and compared with sequences of similar species from GeneBank (B. indicus, B. grunniens (Chinese), B. taurus, B. gaurus, B. primigenius, B. frontalis, Bison bison, and Ovis aries). Individuals were aligned to the B. grunniens reference genome (ARS_UNL_BGru_maternal_1.0), which was also included in the analyses. The mtDNA genes were annotated using the ARS-UCD1.2 cattle sequence as a reference. Ten unique NA yak haplotypes were identified, which a haplotype network separated into two clusters. Variation among the NA haplotypes included 93 nonsynonymous single nucleotide polymorphisms. A maximum likelihood tree including all taxa was made using IQtree after the data were partitioned into twenty-two subgroups using PartitionFinder2. Notably, six NA yak haplotypes formed a clade with B. indicus; the other four haplotypes grouped with B. grunniens and fell as a sister clade to bison, gaur and gayal. These data demonstrate two mitochondrial origins of NA yak with genetic variation in protein coding genes. Although these data suggest yak introgression with B. indicus, it appears to date prior to importation into NA. In addition to contributing to our understanding of the species history, these results suggest the two major mtDNA haplotypes in NA yak may functionally differ. Characterization of the impact of these differences on cellular function is currently underway.

scholarly journals The impact of late-career job loss and genetic risk on body mass index: Evidence from variance polygenic scores

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Lauren L. Schmitz ◽  
Julia Goodwin ◽  
Jiacheng Miao ◽  
Qiongshi Lu ◽  
Dalton Conley
Keyword(s):  
Body Mass Index ◽  
Body Mass ◽  
Complex Traits ◽  
Job Loss ◽  
Past Research ◽  
Long Term Effects ◽  
Polygenic Scores ◽  
Show Evidence ◽  
Using Data ◽  
The Impact

AbstractUnemployment shocks from the COVID-19 pandemic have reignited concerns over the long-term effects of job loss on population health. Past research has highlighted the corrosive effects of unemployment on health and health behaviors. This study examines whether the effects of job loss on changes in body mass index (BMI) are moderated by genetic predisposition using data from the U.S. Health and Retirement Study (HRS). To improve detection of gene-by-environment (G × E) interplay, we interacted layoffs from business closures—a plausibly exogenous environmental exposure—with whole-genome polygenic scores (PGSs) that capture genetic contributions to both the population mean (mPGS) and variance (vPGS) of BMI. Results show evidence of genetic moderation using a vPGS (as opposed to an mPGS) and indicate genome-wide summary measures of phenotypic plasticity may further our understanding of how environmental stimuli modify the distribution of complex traits in a population.

The postcranial skeleton, phylogenetic position, and probable lifestyle of the Early Triassic reptile Procolophon trigoniceps

2003 ◽  
Vol 40 (4) ◽  
pp. 527-556 ◽  
Author(s):  
Michael deBraga
Keyword(s):  
South Africa ◽  
Morphological Study ◽  
Lower Triassic ◽  
Sister Group ◽  
Phylogenetic Position ◽  
Sister Group Relationship ◽  
Early Triassic ◽  
Postcranial Skeleton ◽  
Sister Clade ◽  
Key Innovations

A morphological study of the postcranial skeleton of Procolophon trigoniceps from the Lower Triassic of South Africa and Antarctica is undertaken. Procolophon shares a sister-group relationship with the procolophonid Tichvinskia from the Lower Triassic of Russia and is a basal member of Procolophonidae. This clade also includes the enigmatic taxon Sclerosaurus, believed most recently to be a pareiasaur relative. Owenettids form a separate lineage from Procolophonidae and are predominantly restricted to the Permian of both South Africa and Madagascar. A phylogenetically based assessment is considered, in which specialized modern taxa (sand lizards) are compared to their nonfossorial sister clade, allowing for "key innovations" to be identified. A similar comparison between owenettids and procolophonids reveals a number of apparent "key innovations" within procolophonids that are suggestive of a burrowing lifestyle for Procolophon.

scholarly journals A Novel Body Plan Alters Diversification of Body Shape and Genitalia in Live-Bearing Fish

2021 ◽  
Vol 9 ◽  
Author(s):  
R. Brian Langerhans ◽  
Eduardo Rosa-Molinar
Keyword(s):  
Complex Traits ◽  
Body Shape ◽  
Body Plan ◽  
The Body ◽  
Sperm Transfer ◽  
Body Region ◽  
Adaptive Divergence ◽  
Male Body ◽  
Correlated Evolution ◽  
Anterior Transposition

Major evolutionary innovations can greatly influence subsequent evolution. While many major transitions occurred in the deep past, male live-bearing fishes (family Poeciliidae) more recently evolved a novel body plan. This group possesses a three-region axial skeleton, with one region—the ano-urogenital region—representing a unique body region accommodating male genitalic structures (gonopodial complex). Here we evaluate several hypotheses for the evolution of diversity in this region and examine its role in the evolution of male body shape. Examining Gambusia fishes, we tested a priori predictions for (1) joint influence of gonopodial-complex traits on mating performance, (2) correlated evolution of gonopodial-complex traits at macro- and microevolutionary scales, and (3) predator-driven evolution of gonopodial-complex traits in a post-Pleistocene radiation of Bahamas mosquitofish. We found the length of the sperm-transfer organ (gonopodium) and its placement along the body (gonopodial anterior transposition) jointly influenced mating success, with correlational selection favoring particular trait combinations. Despite these two traits functionally interacting during mating, we found no evidence for their correlated evolution at macro- or microevolutionary scales. In contrast, we did uncover correlated evolution of modified vertebral hemal spines (part of the novel body region) and gonopodial anterior transposition at both evolutionary scales, matching predictions of developmental connections between these components. Developmental linkages in the ano-urogenital region apparently play key roles in evolutionary trajectories, but multiple selective agents likely act on gonopodium length and cause less predictable evolution. Within Bahamas mosquitofish, evolution of hemal-spine morphology, and gonopodial anterior transposition across predation regimes was quite predictable, with populations evolving under high predation risk showing more modified hemal spines with greater modifications and a more anteriorly positioned gonopodium. These changes in the ano-urogenital vertebral region have facilitated adaptive divergence in swimming abilities and body shape between predation regimes. Gonopodium surface area, but not length, evolved as predicted in Bahamas mosquitofish, consistent with a previously suggested tradeoff between natural and sexual selection on gonopodium size. These results provide insight into how restructured body plans offer novel evolutionary solutions. Here, a novel body region—originally evolved to aid sperm transfer—was apparently co-opted to alter whole-organism performance, facilitating phenotypic diversification.

k dependence of the impact ionization transition rate in bulk InAs, GaAs, and Ge

1992 ◽  
Vol 71 (6) ◽  
pp. 2736-2740 ◽  
Author(s):  
Yang Wang ◽  
Kevin F. Brennan
Keyword(s):  
Transition Rate ◽  
Impact Ionization ◽  
The Impact

scholarly journals The association between the serotonin and dopamine neurotransmitters and personality traits

2016 ◽  
Vol 25 (2) ◽  
pp. 109-112 ◽  
Author(s):  
G. Delvecchio ◽  
M. Bellani ◽  
A. C. Altamura ◽  
P. Brambilla
Keyword(s):  
Personality Traits ◽  
Psychiatric Disorders ◽  
Candidate Genes ◽  
Genetic Polymorphisms ◽  
Complex Traits ◽  
Healthy Subjects ◽  
Mental Illnesses ◽  
Biological Mechanisms ◽  
Normal Personality ◽  
The Impact

Evidence from previous studies has reported that complex traits, including psychiatric disorders, are moderately to highly heritable. Moreover, it has also been shown that specific personality traits may increase the risk to develop mental illnesses. Therefore the focus of the research shifted towards the identification of the biological mechanisms underpinning these traits by exploring the effects of a constellation of genetic polymorphisms in healthy subjects. Indeed, studying the effect of genetic variants in normal personality provides a unique means for identifying candidate genes which may increase the risk for psychiatric disorders. In this review, we discuss the impact of two of the most frequently studied genetic polymorphisms on personality in healthy subjects, the 5-HTT polymorphism of the serotonin transporter and the DRD2/DRD4 polymorphisms of the D2/D4 dopamine's receptors. The main aims are: (a) to highlight that the study of candidate genes provides a fruitful ground for the identification of the biological underpinnings of personality without, though, reaching a general consensus about the strength of this relationship; and (b) to outline that the research in personality genetics should be expanded to provide a clearer picture of the heritability of personality traits.

Exploring the impact of morphology, multiple sequence alignment and choice of optimality criteria in phylogenetic inference: a case study with the Neotropical orb-weaving spider genus Wagneriana (Araneae: Araneidae)

2019 ◽  
Vol 188 (4) ◽  
pp. 976-1151 ◽  
Author(s):  
Jimmy Cabra-García ◽  
Gustavo Hormiga
Keyword(s):  
Sequence Alignment ◽  
Multiple Sequence Alignment ◽  
Sister Group ◽  
Optimality Criteria ◽  
Total Evidence ◽  
Multiple Sequence ◽  
Phenotypic Characters ◽  
Methodological Choices ◽  
Group Relationships ◽  
The Impact

Abstract We present a total evidence phylogenetic analysis of the Neotropical orb-weaving spider genus Wagneriana and discuss the phylogenetic impacts of methodological choices. We analysed 167 phenotypic characters and nine loci scored for 115 Wagneriana and outgroups, including 46 newly sequenced species. We compared total evidence analyses and molecular-only analyses to evaluate the impact of phenotypic evidence, and we performed analyses using the programs POY, TNT, RAxML, GARLI, IQ-TREE and MrBayes to evaluate the effects of multiple sequence alignment and optimality criteria. In all analyses, Wagneriana carimagua and Wagneriana uropygialis were nested in the genera Parawixia and Alpaida, respectively, and the remaining species of Wagneriana fell into three main clades, none of which formed a pair of sister taxa. However, sister-group relationships among the main clades and their internal relationships were strongly influenced by methodological choices. Alignment methods had comparable topological effects to those of optimality criteria in terms of ‘subtree pruning and regrafting’ moves. The inclusion of phenotypic evidence, 2.80–3.05% of the total evidence matrices, increased support irrespective of the optimality criterion used. The monophyly of some groups was recovered only after the addition of morphological characters. A new araneid genus, Popperaneus gen. nov., is erected, and Paraverrucosa is resurrected. Four new synonymies and seven new combinations are proposed.

scholarly journals The Impact of Phenocopy on the Genetic Analysis of Complex Traits

PLoS ONE ◽  
2010 ◽  
Vol 5 (7) ◽  
pp. e11876 ◽  
Author(s):  
Francesco Lescai ◽  
Claudio Franceschi
Keyword(s):  
Genetic Analysis ◽  
Complex Traits ◽  
The Impact

scholarly journals Recent advances in genetic predisposition to clinical acute lung injury

2009 ◽  
Vol 296 (5) ◽  
pp. L713-L725 ◽  
Author(s):  
Li Gao ◽  
Kathleen C. Barnes
Keyword(s):  
Acute Lung Injury ◽  
Lung Injury ◽  
Candidate Genes ◽  
Genetic Variants ◽  
Complex Traits ◽  
Association Studies ◽  
Genetic Association Studies ◽  
Special Focus ◽  
Disease Manifestation ◽  
The Impact

It has been well established that acute lung injury (ALI), and the more severe presentation of acute respiratory distress syndrome (ARDS), constitute complex traits characterized by a multigenic and multifactorial etiology. Identification and validation of genetic variants contributing to disease susceptibility and severity has been hampered by the profound heterogeneity of the clinical phenotype and the role of environmental factors, which includes treatment, on outcome. The critical nature of ALI and ARDS, compounded by the impact of phenotypic heterogeneity, has rendered the amassing of sufficiently powered studies especially challenging. Nevertheless, progress has been made in the identification of genetic variants in select candidate genes, which has enhanced our understanding of the specific pathways involved in disease manifestation. Identification of novel candidate genes for which genetic association studies have confirmed a role in disease has been greatly aided by the powerful tool of high-throughput expression profiling. This article will review these studies to date, summarizing candidate genes associated with ALI and ARDS, acknowledging those that have been replicated in independent populations, with a special focus on the specific pathways for which candidate genes identified so far can be clustered.

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