Morphology and multi-gene phylogeny reveal a new fungal genus and species from Hevea brasiliensis latex in Yunnan, China

Phytotaxa ◽  
2022 ◽  
Vol 530 (1) ◽  
pp. 65-76
Author(s):  
RUIFANG XU ◽  
KEVIN D. HYDE ◽  
SAMANTHA C. KARUNARATHNA ◽  
JIAN-CHU XU ◽  
PETER E. MORTIMER ◽  
...  

During a survey of rubber tree plantations in Yunnan Province, China, a fungus growing on natural rubber latex was collected and isolated. Maximum likelihood and Bayesian analyses of combined ITS, LSU, SSU, tef-α and rpb2 genes showed the isolated taxon belongs to Wiesneriomycetaceae and was well separated from closely related genera with high statistical support. It can be differentiated from other genera in Wiesneriomycetaceae by synnemata with catenate conidia that are cylindrical, 0–4 to multi-septate, often with a dark brown band at the septa. Morphology, phylogenetic analyses and pairwise homoplasy index (PHI) tests provide evidence that the new isolate is a distinct genus. The genus Heveicola is introduced, with H. xishuangbannaensis as the type species. A key to the genera in Wiesneriomycetaceae is also provided.

MycoKeys ◽  
2020 ◽  
Vol 70 ◽  
pp. 59-88
Author(s):  
Danushka S. Tennakoon ◽  
Kasun M. Thambugala ◽  
Dhanushka N. Wanasinghe ◽  
Eleni Gentekaki ◽  
Itthayakorn Promputtha ◽  
...  

A novel ascomycetous genus, Elongaticollum, occurring on leaf litter of Hedychium coronarium (Zingiberaceae) in Taiwan, is described and illustrated. Elongaticollum is characterized by dark brown to black, superficial, obpyriform, pycnidial conidiomata with a distinct elongate neck, and oval to oblong, hyaline, aseptate conidia. Phylogenetic analyses (maximum likelihood, maximum parsimony and Bayesian) of combined ITS, LSU, SSU and tef1-α sequence data revealed Elongaticollum as a distinct genus within the family Phaeosphaeriaceae with high statistical support. In addition, Ophiosphaerella taiwanensis and Phaeosphaeriopsis beaucarneae are described as new species from dead leaves of Agave tequilana and Beaucarnea recurvata (Asparagaceae), respectively. Neosetophoma poaceicola is reported as a new host record from dead leaves of Musa acuminata (Musaceae). Newly described taxa are compared with other similar species and comprehensive descriptions and micrographs are provided.


MycoKeys ◽  
2021 ◽  
Vol 82 ◽  
pp. 57-79
Author(s):  
Guang-Cong Ren ◽  
Dhanushka N. Wanasinghe ◽  
Jutamart Monkai ◽  
Peter E. Mortimer ◽  
Kevin D. Hyde ◽  
...  

During our survey of the diversity of woody litter fungi in China and Thailand, three Hermatomyces species were collected from dead woody twigs of Dipterocarpus sp. (Dipterocarpaceae) and Ehretia acuminata (Boraginaceae). Both morphology and multigene analyses revealed two taxa as new species (Hermatomyces turbinatus and H. jinghaensis) and the remaining collections as new records of H. sphaericus. Hermatomyces turbinatus is characterized by 1) dimorphic conidia, having circular to oval lenticular conidia and 2) turbinate conidia consisting of two columns with two septa composed of 2–3 cells in each column. Hermatomyces jinghaensis is characterized by dimorphic conidia, having circular to oval lenticular conidia and clavate or subcylindrical to cylindrical conidia and consisting of one or two columns with 6–8 cells in each column. Phylogenetic analyses of combined LSU, ITS, tub2, tef1-α and rpb2 sequence data supports the placement of these new taxa within Hermatomycetaceae with high statistical support.


Nematology ◽  
2018 ◽  
Vol 20 (1) ◽  
pp. 67-80 ◽  
Author(s):  
Ruihang Cai ◽  
Munawar Maria ◽  
Eda Marie Barsalote ◽  
Sergei A. Subbotin ◽  
Jingwu Zheng

Xiphinema hangzhouensesp. n. is described from the rhizosphere ofMagnolia grandiflorain Hangzhou, China. The new species is characterised by having a monodelphic reproductive system, slim body, total stylet = 186-192μm long and vulva located anteriorly at 27.6-31.2% of total body length. The new species has a gonad 400-450μm long with a simple uterus and no Z-organ. The female tail is elongated conoid with a rounded terminus. The species has four juvenile stages and no male was found. The polytomous identification codes ofX. hangzhouensesp. n. are A1, B4, C2, D23, E12, F2, G2, H2, I23, J2, K2, L1. The new species is morphologically similar toX. winotoi. Phylogenetic analyses of the 28S rRNA, ITS rRNA, 18S rRNA and partialCOIgene sequences ofX. hangzhouensesp. n. and some closely relatedXiphinemaspecies revealed that the new taxon clustered with high statistical support withX. radicicolaandX. setariae.


Phytotaxa ◽  
2018 ◽  
Vol 345 (1) ◽  
pp. 1 ◽  
Author(s):  
JUNFU LI ◽  
RAJESH JEEWON ◽  
RUNGTIWA PHOOKAMSAK ◽  
DARBHE J. BHAT ◽  
AUSANA MAPOOK ◽  
...  

Marinophialophora garethjonesii sp. nov., representing a novel genus Marinophialophora gen. nov., associated with the basidiomycete fungus, Halocyphina on mangrove wood from Phetchaburi, Thailand, is described and illustrated. Marinophialophora morphologically resembles Phialophora and Junctospora (Herpotrichiellaceae, Chaetothyriales) in having macronematous, unbranched or branched conidiophores, globose to subglobose, solitary, acrogenous, pale to subhyaline, aseptate, conidia in chains and phialidic conidiogenous cells. Marinophialophora mainly differs from other related genera due to its conidia borne in basipetally developing branched chains and septate conidiophores. Phylogenetic analyses of a combined ITS, LSU and SSU sequence data show that Marinophialophora garethjonesii constitutes an independent lineage with high statistical support basal to the genus Exophiala within the family Herpotrichiellaceae (Chaetothyriales). The new marine taxon is described herein with illustrations and relationships inferred from DNA sequence data.


Nematology ◽  
2008 ◽  
Vol 10 (6) ◽  
pp. 897-910 ◽  
Author(s):  
Maria de Fátima Muniz ◽  
Regina Carneiro ◽  
Maria Ritta Almeida ◽  
Vicente Paulo Campos ◽  
Philippe Castagnone-Sereno ◽  
...  

AbstractIsozymes (esterase and malate dehydrogenase), SCAR and RAPD-PCR were studied in 15 populations of three races of Meloidogyne exigua collected in coffee-producing areas in Brazil, Bolivia and Costa Rica and one population from rubber tree plantations in Brazil. This study revealed four esterase phenotypes (E1, E2, E2a, E3) and three malate dehydrogenase phenotypes (N1, N1a, N2) for M. exigua populations. The most common multi-enzyme phenotype was E2N1. The enzymatic phenotypes do not separate M. exigua races. Sixteen populations of M. exigua were tested in Multiplex PCR using SCAR primers ex-D15F/R that allowed the identification of all M. exigua populations. Phylogenetic analyses showed high intraspecific polymorphism (25.9-59.6%) for all M. exigua studied. However, all populations clustered together with 100% bootstrap support, thereby demonstrating the consistency of species identification. In general, no correlation was found between enzymatic profile, race and genetic polymorphism of the studied populations.


Phytotaxa ◽  
2019 ◽  
Vol 420 (4) ◽  
pp. 273-282
Author(s):  
DIANA S. MARASINGHE ◽  
MILAN C. SAMARAKOON ◽  
SINANG HONGSANAN ◽  
SARANYAPHAT BOONMEE ◽  
ERIC H. C. MCKENZIE

Iodosphaeria honghense sp. nov., collected from dead twigs of an unknown host in Honghe, Yunnan Province, China, is introduced based on morphological characteristics and phylogenetic analyses. Iodosphaeria honghense is distinct from other similar taxa in having cylindrical to allantoid, guttulate ascospores without a mucilaginous sheath. Maximum likelihood and Bayesian analyses based on combined LSU, ITS and RPB2 data matrix indicate that I. honghense forms a distinct lineage within the Iodosphaeriaceae. This study provides a detailed description and illustrations with morphological comparisons, and includes a key to accepted Iodosphaeria species.


2012 ◽  
Vol 87 (3) ◽  
pp. 371-375 ◽  
Author(s):  
J.Y. Li ◽  
G.H. Liu ◽  
Y. Wang ◽  
H.Q. Song ◽  
R.Q. Lin ◽  
...  

AbstractThe present study examined sequence variation in three mitochondrial DNA (mtDNA) genes, namely cytochrome c oxidase subunit 3 (cox3) and NADH dehydrogenase subunits 1 and 4 (nad1 and nad4), among Ascaridia galli isolates from different geographical localities in China. A portion of cox3 (pcox3), nad1 (pnad1) and nad4 (pnad4) genes were amplified by polymerase chain reaction (PCR) separately from adult A. galli individuals and the amplicons were subjected to sequencing from both directions. The length of the sequences of pcox3, pnad1 and pnad4 were 408 bp, 471 bp and 333 bp, respectively. The intraspecific sequence variations within A. galli were 0–1.7% for pcox3, 0–2.8% for pnad1 and 0–3.4% for pnad4. The A+T contents of the sequences were 67.16–67.65% (pcox3), 67.09–67.94% (pnad1) and 69.91–71.77% (pnad4). The interspecific sequence differences among members of the Ascaridida were significantly higher, being 13.2–30.9%, 12.8–29.0% and 15.1–34.1% for pcox3, pnad1 and pnad4, respectively. Phylogenetic analyses using combined sequences of pcox3, pnad1 and pnad4, with three different computational algorithms (Bayesian analysis, maximum likelihood and maximum parsimony), all revealed distinct groups with high statistical support. These findings demonstrated the existence of intraspecific variation in mitochondrial DNA (mtDNA) sequences among A. galli isolates from different geographical regions in China, and have implications for studying molecular epidemiology and population genetics of A. galli.


Phytotaxa ◽  
2021 ◽  
Vol 528 (2) ◽  
pp. 111-124
Author(s):  
LI LU ◽  
SAOWALUCK TIBPROMMA ◽  
SAMANTHA KARUNARATHNA ◽  
VINODHINI THIYAGARAJA ◽  
JIANCHU XU ◽  
...  

Coffee, an important economic crop, is often threatened by fungal infections. During a survey of coffee fungi in Yunnan Province, China, two saprobic Stictidaceae species were collected. Maximum likelihood (ML) and Bayesian posterior probability of combined LSU, ITS and mtSSU genes supported the placement of our fungal collections within Fitzroyomyces and Ostropomyces with high statistical support. A new species, Fitzroyomyces yunnanensis sp. nov. and a new record, Ostropomyces pruinosellus are introduced. These two species were recorded on coffee wood in sexual and asexual states, respectively. Their taxonomic placements were further supported by detailed morphological and phylogenetic comparisons of allied taxa.


2021 ◽  
Vol 7 (6) ◽  
pp. 485
Author(s):  
Boxun Li ◽  
Yang Yang ◽  
Jimiao Cai ◽  
Xianbao Liu ◽  
Tao Shi ◽  
...  

Rubber tree Corynespora leaf fall (CLF) disease, caused by the fungus Corynespora cassiicola, is one of the most damaging diseases in rubber tree plantations in Asia and Africa, and this disease also threatens rubber nurseries and young rubber plantations in China. C. cassiicola isolates display high genetic diversity, and virulence profiles vary significantly depending on cultivar. Although one phytotoxin (cassicolin) has been identified, it cannot fully explain the diversity in pathogenicity between C. cassiicola species, and some virulent C. cassiicola strains do not contain the cassiicolin gene. In the present study, we report high-quality gapless genome sequences, obtained using short-read sequencing and single-molecule long-read sequencing, of two Chinese C. cassiicola virulent strains. Comparative genomics of gene families in these two stains and a virulent CPP strain from the Philippines showed that all three strains experienced different selective pressures, and metabolism-related gene families vary between the strains. Secreted protein analysis indicated that the quantities of secreted cell wall-degrading enzymes were correlated with pathogenesis, and the most aggressive CCP strain (cassiicolin toxin type 1) encoded 27.34% and 39.74% more secreted carbohydrate-active enzymes (CAZymes) than Chinese strains YN49 and CC01, respectively, both of which can only infect rubber tree saplings. The results of antiSMASH analysis showed that all three strains encode ~60 secondary metabolite biosynthesis gene clusters (SM BGCs). Phylogenomic and domain structure analyses of core synthesis genes, together with synteny analysis of polyketide synthase (PKS) and non-ribosomal peptide synthetase (NRPS) gene clusters, revealed diversity in the distribution of SM BGCs between strains, as well as SM polymorphisms, which may play an important role in pathogenic progress. The results expand our understanding of the C. cassiicola genome. Further comparative genomic analysis indicates that secreted CAZymes and SMs may influence pathogenicity in rubber tree plantations. The findings facilitate future exploration of the molecular pathogenic mechanism of C. cassiicola.


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