scholarly journals COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

2021 ◽  
Vol 17 (12) ◽  
Author(s):  
Marek Ostaszewski ◽  
Anna Niarakis ◽  
Alexander Mazein ◽  
Inna Kuperstein ◽  
Robert Phair ◽  
...  
2021 ◽  
Vol 17 (10) ◽  
Author(s):  
Marek Ostaszewski ◽  
Anna Niarakis ◽  
Alexander Mazein ◽  
Inna Kuperstein ◽  
Robert Phair ◽  
...  

Immunobiology ◽  
2013 ◽  
Vol 218 (8) ◽  
pp. 1104-1112 ◽  
Author(s):  
André A. Santos ◽  
Valnês Rodrigues-Junior ◽  
Rafael F. Zanin ◽  
Thiago J. Borges ◽  
Cristina Bonorino ◽  
...  

2020 ◽  
Vol 7 (1) ◽  
Author(s):  
Marek Ostaszewski ◽  
Alexander Mazein ◽  
Marc E. Gillespie ◽  
Inna Kuperstein ◽  
Anna Niarakis ◽  
...  

PLoS ONE ◽  
2016 ◽  
Vol 11 (7) ◽  
pp. e0159159 ◽  
Author(s):  
Ana María Sánchez-Díaz ◽  
Beatriz Romero-Hernández ◽  
Elisa Conde-Moreno ◽  
Young-Keun Kwak ◽  
Javier Zamora ◽  
...  

2020 ◽  
Author(s):  
Marek Ostaszewski ◽  
Anna Niarakis ◽  
Alexander Mazein ◽  
Inna Kuperstein ◽  
Robert Phair ◽  
...  

AbstractWe hereby describe a large-scale community effort to build an open-access, interoperable, and computable repository of COVID-19 molecular mechanisms - the COVID-19 Disease Map. We discuss the tools, platforms, and guidelines necessary for the distributed development of its contents by a multi-faceted community of biocurators, domain experts, bioinformaticians, and computational biologists. We highlight the role of relevant databases and text mining approaches in enrichment and validation of the curated mechanisms. We describe the contents of the map and their relevance to the molecular pathophysiology of COVID-19 and the analytical and computational modelling approaches that can be applied to the contents of the COVID-19 Disease Map for mechanistic data interpretation and predictions. We conclude by demonstrating concrete applications of our work through several use cases.


2020 ◽  
Vol 7 (1) ◽  
Author(s):  
Marek Ostaszewski ◽  
Alexander Mazein ◽  
Marc E. Gillespie ◽  
Inna Kuperstein ◽  
Anna Niarakis ◽  
...  

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