scholarly journals An Experimental Study of Strengthing of Concrete by Bacterial Mineral Precipitation

2021 ◽  
Vol 9 (10) ◽  
pp. 998-1004
Author(s):  
A. Narendiran
Keyword(s):  
Bacillus Subtilis ◽  
Bacterial Species ◽  
Testing Machine ◽  
Calcite Precipitation ◽  
Inorganic Solids ◽  
Mix Proportioning ◽  
Viable Bacteria ◽  
A New Technique ◽  
Living Organisms ◽  
Concrete Matrix

Abstract: A new technique in remediating cracks and fissures in concrete by utilizing microbiologically induced Calcite (CaCo3) precipitation is discussed. Microbiologically induced calcite precipitation (MICP) is a technique that comes under a broader category of science called Bio Mineralization. It is a process by which living organisms form inorganic solids. Bacillus subtilis, a common soil bacterium can induce the precipitation of calcite. The objective of the present investigation is to study the potential application of bacterial species i.e. Bacillus subtilis to improve the strength of cement concrete. Here we have made an attempt to incorporate dormant but viable bacteria in the concrete matrix which will contribute to the strength of the concrete. In this project, bacterial concrete is prepared under grade of concrete M30.The design mix proportioning also carried under IS code provision. Testing of specimens are carried at 7 days, 14 days and 28 days of curing by Compression Testing Machine and Universal Testing Machine for corresponding specimens.

scholarly journals Effects of the Chromosome Partitioning Protein Spo0J (ParB) on oriC Positioning and Replication Initiation in Bacillus subtilis

2003 ◽  
Vol 185 (4) ◽  
pp. 1326-1337 ◽  
Author(s):  
Philina S. Lee ◽  
Daniel Chi-Hong Lin ◽  
Shigeki Moriya ◽  
Alan D. Grossman
Keyword(s):  
Bacillus Subtilis ◽  
Binding Sites ◽  
Fluorescent Protein ◽  
Bacterial Species ◽  
Significant Proportion ◽  
Subcellular Location ◽  
Replication Initiation ◽  
Null Mutant ◽  
Protein Ratio ◽  
Chromosome Partitioning

ABSTRACT Spo0J (ParB) of Bacillus subtilis is a DNA-binding protein that belongs to a conserved family of proteins required for efficient plasmid and chromosome partitioning in many bacterial species. We found that Spo0J contributes to the positioning of the chromosomal oriC region, but probably not by recruiting the origin regions to specific subcellular locations. In wild-type cells during exponential growth, duplicated origin regions were generally positioned around the cell quarters. In a spo0J null mutant, sister origin regions were often closer together, nearer to midcell. We found, by using a Spo0J-green fluorescent protein [GFP] fusion, that the subcellular location of Spo0J was a consequence of the chromosomal positions of the Spo0J binding sites. When an array of binding sites (parS sites) were inserted at various chromosomal locations in the absence of six of the eight known parS sites, Spo0J-GFP was no longer found predominantly at the cell quarters, indicating that Spo0J is not sufficient to recruit chromosomal parS sites to the cell quarters. spo0J also affected chromosome positioning during sporulation. A spo0J null mutant showed an increase in the number of cells with some origin-distal regions located in the forespore. In addition, a spo0J null mutation caused an increase in the number of foci per cell of LacI-GFP bound to arrays of lac operators inserted in various positions in the chromosome, including the origin region, an increase in the DNA-protein ratio, and an increase in origins per cell, as determined by flow cytometry. These results indicate that the spo0J mutant produced a significant proportion of cells with increased chromosome content, probably due to increased and asynchronous initiation of DNA replication.

Toxicity of the First Ten MEIC Chemicals to Bacteria

1993 ◽  
Vol 21 (2) ◽  
pp. 151-155
Author(s):  
Gustaw Kerszman
Keyword(s):  
Escherichia Coli ◽  
Bacillus Subtilis ◽  
Linear Regression ◽  
Minimal Inhibitory Concentration ◽  
Blood Concentration ◽  
Inhibitory Concentration ◽  
Human Lymphocytes ◽  
Bacterial Species ◽  
E Coli ◽  
Mild Toxicity

The toxicity of the first ten MEIC chemicals to Escherichia coli and Bacillus subtilis was examined. Nine of the chemicals were toxic to the bacteria, with the minimal inhibitory concentration (MIC) ranging from 10-3 to 4.4M. The sensitivities of both organisms were similar, but the effect on E. coli was often bactericidal, while it was bacteriostatic for B. subtilis. Digoxin was not detectably toxic to either bacterial species. Amitriptyline and FeSO4 were relatively less toxic to the bacteria than to human cells. For seven chemicals, a highly significant linear regression was established between log MIC in bacteria and log of blood concentration, giving lethal and moderate/mild toxicity in humans, as well as with toxicity to human lymphocytes.

scholarly journals Isolation and Characterization of Melanin Pigment from Bacillus subtilis

2020 ◽  
Vol 2 (1) ◽  
pp. 23
Keyword(s):  
Bacillus Subtilis ◽  
Chemical Characterization ◽  
Visible Spectrum ◽  
Water Soluble ◽  
Melanin Pigment ◽  
Binding Property ◽  
Isolation And Characterization ◽  
Dna Binding Property ◽  
Pharmaceutical Industries ◽  
Living Organisms

Melanin is nearly a ubiquitous pigment synthesized by living organisms in the course of hydroxylation and polymerization. Melanin has immense application potential in the field of agriculture, cosmetics, and pharmaceutical industries. The aim of this study was to obtain the melanin pigment produced by Bacillus subtilis using T medium and study the biological and chemical characteristics of the pigment. Melanin pigment production in Bacillus was analyzed and was optimized at different temperatures and pH for optimal production. The pigment was confirmed by its chemical characterization. The melanin pigment obtained was water-soluble and was confirmed to be photoprotective using Ultraviolet-Visible spectrum analysis, which showed maximum absorption in the UV region (200-300 nm), but diminished towards the visible regions. The pigment also showed antioxidant activity. Fourier Transformation Infrared spectroscopy analysis confirmed the crude melanin extract obtained as melanin. DNA binding property of melanin was studied. UV- Visible spectroscopic methods shows that melanin is able to bind DNA and impact protection. The pigment was analyzed for its application in the field of agriculture. It had shown to impart UV protection to UV exposed seeds during germination. Melanin also found to enhance the growth of plants when studied under laboratory conditions.

The Development of Antibiotics Based on Nanostructured Manganese Oxide; Understanding Mechanism from Fundamental Aspects to Application

2020 ◽  
Vol 20 (12) ◽  
pp. 7618-7628
Author(s):  
Ayesha Taj ◽  
Rabisa Zia ◽  
Sadaf Hameed ◽  
Adnan Mujahid ◽  
Asma Rehman ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Bacillus Subtilis ◽  
Manganese Oxide ◽  
Bacterial Resistance ◽  
Bacterial Species ◽  
Spherical Particles ◽  
X Ray ◽  
Atomic Force ◽  
Uv Visible ◽  
Scanning Electron

The emergence of bacterial resistance to currently available antibiotics emphasized the urgent need for new antibacterial agents. Nanotechnology-based approaches are substantially contributing to the development of effective and better-formulated antibiotics. Here, we report the synthesis of stable manganese oxide nanostructures (MnO NS) by a facile, one-step, microwave-assisted method. Asprepared MnO NS were thoroughly characterized by atomic force microscopy (AFM), field emission scanning electron microscopy (FESEM), dynamic light scattering (DLS), UV-Visible spectroscopy and X-ray powder diffraction (XRD). UV-Visible spectra give a sharp absorption peak at a maximum wavelength of 430 nm showed surface plasmon resonance (SPR). X-ray diffraction (XRD) profile demonstrated pure phase and crystalline nature of nanostructures. Morphological investigations by a scanning electron microscope showed good dispersity with spherical particles possessing a size range between 10–100 nm. Atomic force microscope data exhibited that the average size of MnO NS can be controlled between 25 nm to 150 nm by a three-fold increment in the amount of stabilizer (o-phenylenediamine). Antimicrobial activity of MnO NS on both gram-positive (Bacillus subtilis) and gram-negative (Escherichia coli) bacterial strains showed that prepared nanostructures were effective against microorganisms. Further, this antibacterial activity was found to be dependent on nanoparticles (NPs) size and bacterial species. These were more effective against Bacillus subtilis (B. subtilis) as compared to Escherichia coli (E. coli). Considering the results together, this study paves the way for the formulation of similar nanostructures as effective antibiotics to kill other pathogens by a more biocompatible platform. This is the first report to synthesize the MnO NS by green approach and its antibacterial application.

scholarly journals Mechanisms of encapsulation of bacteria in self-healing concrete: review

DYNA ◽  
2019 ◽  
Vol 86 (210) ◽  
pp. 17-22
Author(s):  
Martín Eduardo Espitia Nery ◽  
Dery Esmeralda Corredor Pulido ◽  
Paula Andrea Castaño Oliveros ◽  
Johan Andrey Rodriguez Medina ◽  
Querly Yubiana Ordoñez Bello ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Concrete Strength ◽  
Self Healing ◽  
Bacterial Survival ◽  
Precipitate Calcium Carbonate ◽  
Structural Deterioration ◽  
Bacterial Encapsulation ◽  
Concrete Matrix ◽  
In Situ Repair

Fissures in concrete structures result from structural deterioration and inadequate building processes, among other factors. Traditional in situ repair is often expensive and complex. For this reason, self-healing techniques have been developed, such as the use of bacteria that precipitate calcium carbonate and seal fissures. However, adding bacteria directly to the concrete matrix reduces bacterial survival. We present a review of different methods of bacterial encapsulation and their effects on fissure repair and concrete resistance. We argue that encapsulation of Bacillus subtilis in clay is the most promising method for this type of concrete, increasing concrete strength by 12% and repairing fissures of up to 0.52 mm.

scholarly journals Addition of Poly(A) and Heteropolymeric 3′ Ends in Bacillus subtilis Wild-Type and Polynucleotide Phosphorylase-Deficient Strains

2005 ◽  
Vol 187 (14) ◽  
pp. 4698-4706 ◽  
Author(s):  
Juan Campos-Guillén ◽  
Patricia Bralley ◽  
George H. Jones ◽  
David H. Bechhofer ◽  
Gabriela Olmedo-Alvarez
Keyword(s):  
Bacillus Subtilis ◽  
Bacterial Species ◽  
Synthetic Activity ◽  
Polynucleotide Phosphorylase ◽  
Wild Type ◽  
Mutant Strains ◽  
Mean Size ◽  
Identical Nucleotide ◽  
End Sequences ◽  
Polymerase I

ABSTRACT Polyadenylation plays a role in decay of some bacterial mRNAs, as well as in the quality control of stable RNA. In Escherichia coli, poly(A) polymerase I (PAP I) is the main polyadenylating enzyme, but the addition of 3′ tails also occurs in the absence of PAP I via the synthetic activity of polynucleotide phosphorylase (PNPase). The nature of 3′-tail addition in Bacillus subtilis, which lacks an identifiable PAP I homologue, was studied. Sizing of poly(A) sequences revealed a similar pattern in wild-type and PNPase-deficient strains. Sequencing of 152 cloned cDNAs, representing 3′-end sequences of nontranslated and translated RNAs, revealed modified ends mostly on incomplete transcripts, which are likely to be decay intermediates. The 3′-end additions consisted of either short poly(A) sequences or longer heteropolymeric ends with a mean size of about 40 nucleotides. Interestingly, multiple independent clones exhibited complex heteropolymeric ends of very similar but not identical nucleotide sequences. Similar polyadenylated and heteropolymeric ends were observed at 3′ ends of RNA isolated from wild-type and pnpA mutant strains. These data demonstrated that, unlike the case of some other bacterial species and chloroplasts, PNPase of Bacillus subtilis is not the major enzyme responsible for the addition of nucleotides to RNA 3′ ends.

scholarly journals Galactose Metabolism Plays a Crucial Role in Biofilm Formation by Bacillus subtilis

mBio ◽  
2012 ◽  
Vol 3 (4) ◽  
Author(s):  
Yunrong Chai ◽  
Pascale B. Beauregard ◽  
Hera Vlamakis ◽  
Richard Losick ◽  
Roberto Kolter
Keyword(s):  
Bacillus Subtilis ◽  
Biofilm Formation ◽  
Carbon Sources ◽  
Galactose Metabolism ◽  
Content Type ◽  
Leloir Pathway ◽  
The Matrix ◽  
Living Organisms ◽  
Galactose Metabolites ◽  
Biofilm Matrix

ABSTRACTGalactose is a common monosaccharide that can be utilized by all living organisms via the activities of three main enzymes that make up the Leloir pathway: GalK, GalT, and GalE. InBacillus subtilis, the absence of GalE causes sensitivity to exogenous galactose, leading to rapid cell lysis. This effect can be attributed to the accumulation of toxic galactose metabolites, since thegalEmutant is blocked in the final step of galactose catabolism. In a screen for suppressor mutants restoring viability to agalEnull mutant in the presence of galactose, we identified mutations insinR, which is the major biofilm repressor gene. These mutations caused an increase in the production of the exopolysaccharide (EPS) component of the biofilm matrix. We propose that UDP-galactose is the toxic galactose metabolite and that it is used in the synthesis of EPS. Thus, EPS production can function as a shunt mechanism for this toxic molecule. Additionally, we demonstrated that galactose metabolism genes play an essential role inB. subtilisbiofilm formation and that the expressions of both thegalandepsgenes are interrelated. Finally, we propose thatB. subtilisand other members of theBacillusgenus may have evolved to utilize naturally occurring polymers of galactose, such as galactan, as carbon sources.IMPORTANCEBacteria switch from unicellular to multicellular states by producing extracellular matrices that contain exopolysaccharides. In such aggregates, known as biofilms, bacteria are more resistant to antibiotics. This makes biofilms a serious problem in clinical settings. The resilience of biofilms makes them very useful in industrial settings. Thus, understanding the production of biofilm matrices is an important problem in microbiology. In studying the synthesis of the biofilm matrix ofBacillus subtilis, we provide further understanding of a long-standing microbiological observation that certain mutants defective in the utilization of galactose became sensitive to it. In this work, we show that the toxicity observed before was because cells were grown under conditions that were not propitious to produce the exopolysaccharide component of the matrix. When cells are grown under conditions that favor matrix production, the toxicity of galactose is relieved. This allowed us to demonstrate that galactose metabolism is essential for the synthesis of the extracellular matrix.

scholarly journals Genetic optimisation of bacteria-induced calcite precipitation in Bacillus subtilis

2021 ◽  
Vol 20 (1) ◽  
Author(s):  
Timothy D. Hoffmann ◽  
Kevin Paine ◽  
Susanne Gebhard
Keyword(s):  
Bacillus Subtilis ◽  
Cell Surface ◽  
Rational Design ◽  
Molecular Mechanisms ◽  
De Novo ◽  
Contributing Factors ◽  
Calcite Precipitation ◽  
Nucleation Sites ◽  
Nickel Uptake ◽  
Extracellular Substances

Abstract Background Microbially induced calcite precipitation (MICP) is an ancient property of bacteria, which has recently gained considerable attention for biotechnological applications. It occurs as a by-product of bacterial metabolism and involves a combination of chemical changes in the extracellular environment, e.g. pH increase, and presence of nucleation sites on the cell surface or extracellular substances produced by the bacteria. However, the molecular mechanisms underpinning MICP and the interplay between the contributing factors remain poorly understood, thus placing barriers to the full biotechnological and synthetic biology exploitation of bacterial biomineralisation. Results In this study, we adopted a bottom-up approach of systematically engineering Bacillus subtilis, which has no detectable intrinsic MICP activity, for biomineralisation. We showed that heterologous production of urease can induce MICP by local increases in extracellular pH, and this can be enhanced by co-expression of urease accessory genes for urea and nickel uptake, depending on environmental conditions. MICP can be strongly enhanced by biofilm-promoting conditions, which appeared to be mainly driven by production of exopolysaccharide, while the protein component of the biofilm matrix was dispensable. Attempts to modulate the cell surface charge of B. subtilis had surprisingly minor effects, and our results suggest this organism may intrinsically have a very negative cell surface, potentially predisposing it for MICP activity. Conclusions Our findings give insights into the molecular mechanisms driving MICP in an application-relevant chassis organism and the genetic elements that can be used to engineer de novo or enhanced biomineralisation. This study also highlights mutual influences between the genetic drivers and the chemical composition of the surrounding environment in determining the speed, spatial distribution and resulting mineral crystals of MICP. Taken together, these data pave the way for future rational design of synthetic precipitator strains optimised for specific applications.

scholarly journals Retarded swarming motility in Bacillus subtilis NRS-762 and Pseudomonas aeruginosa PRD-10

2018 ◽  
Author(s):  
Wenfa Ng
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Bacillus Subtilis ◽  
Bacterial Species ◽  
Nutritional Stress ◽  
Cellular Level ◽  
Bacterial Cells ◽  
Loss Of Function ◽  
Swarming Motility ◽  
Bacteria Growth ◽  
Solid Media

Coping with nutritional stress is essential for cell survival, of which many strategies at the cellular level lend support for ensuring the survival of the population at a particular habitat. One postulated mechanism is swarming motility in bacterial cells, where, upon depletion of nutrients at a locale, cells would coordinate their movement, synthesize more flagella, and secrete lubricants for moving rapidly across surfaces in search for food. Known to engage in swarming motility, Bacillus subtilis and Pseudomonas aeruginosa are two common bacterial species with versatile metabolism that use the motility mode to colonize new habitats with more favourable environmental and nutritional conditions. However, experimental observations of bacteria growth on a variety of agar media revealed that B. subtilis NRS-762 (ATCC 8473) and P. aeruginosa PRD-10 (ATCC 15442) exhibited retarded swarming motility upon entry into stationary phase on solid media. Specifically, B. subtilis NRS-762 colonies exhibited round, wrinkled morphologies compared to complex filamented swarming patterns common in strains able to engage in swarming motility. On the other hand, P. aeruginosa PRD-10 colonies were round, mucoid, and expanded outwards from the colony centre without extending filaments from the centre; thereby, indicating retarded swarming motility. Thus, impaired cellular machinery for swarming motility or mutated and deleted genes likely account for observed retarded swarming motility in B. subtilis NRS-762 and P. aeruginosa PRD-10. More importantly, observations of small filaments extending radially from an expanded colony of P. aeruginosa PRD-10 grown on minimal salts medium supplemented with yeast extract highlighted possible loss of function of effector molecules that transmit cellular decision at swarming motility into movement, while sensory mechanisms feeding into the motility mechanism remained intact. More broadly, observations of impaired swarming motility in B. subtilis NRS-762 and P. aeruginosa PRD-10 in two species otherwise endowed with the motility mode highlighted that additional triggers for swarming motility are likely present, and the motility mode may have been evolutionary selected for other functions in addition to foraging for food in times of nutritional stress.

scholarly journals Reclassification of the biocontrol agents Bacillus subtilis BY-2 and Tu-100 as Bacillus velezensis and insights into the genomic and specialized metabolite diversity of the species

Microbiology ◽  
2020 ◽  
Vol 166 (12) ◽  
pp. 1121-1128 ◽  
Author(s):  
Alex J. Mullins ◽  
Yinshui Li ◽  
Lu Qin ◽  
Xiaojia Hu ◽  
Lihua Xie ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Natural Product ◽  
Type Species ◽  
Bacterial Species ◽  
Gene Clusters ◽  
Core Gene ◽  
Biocontrol Agents ◽  
Bacillus Velezensis ◽  
Content Type ◽  
Link Type

The genomes of two historical Bacillus species strains isolated from the roots of oilseed rape and used routinely in PR China as biocontrol agents to suppress Sclerotinia disease were sequenced. Average nucleotide identity (ANI) and digital DNA–DNA hybridization analyses demonstrated that they were originally misclassified as Bacillus subtilis and now belong to the bacterial species Bacillus velezensis . A broader ANI analysis of available Bacillus genomes identified 292 B. velezensis genomes that were then subjected to core gene analysis and phylogenomics. Prediction and dereplication of specialized metabolite biosynthetic gene clusters (BGCs) defined the prevalence of multiple antimicrobial-associated BGCs and highlighted the natural product potential of B. velezensis . By defining the core and accessory antimicrobial biosynthetic capacity of the species, we offer an in-depth understanding of B. velezensis natural product capacity to facilitate the selection and testing of B. velezensis strains for use as biological control agents.

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