scholarly journals Aza-Yang Cyclization—Buchner Aromatic Ring Expansion: Collective Synthesis of Cycloheptatriene-containing Azetidine Lactones

2021 ◽  
Author(s):  
Manvendra Singh ◽  
Bryce Gaskins ◽  
Daniel Johnson ◽  
Christopher Elles ◽  
Zarko Boskovic
Keyword(s):  
Chemical Space ◽  
Structural Complexity ◽  
Ring Expansion ◽  
Reaction Rates ◽  
Photochemical Reactions ◽  
Photon Absorption ◽  
Initial Reaction ◽  
Aromatic Rings ◽  
Carbene Insertion ◽  
New Compounds

We prepared a collection of complex cycloheptatriene-containing azetidine lactones by ap- plying two key photochemical reactions: “aza-Yang” cyclization and Buchner carbene insertion into aromatic rings. While photolysis of phenacyl amines leads to a rapid charge transfer and elimination, we found that a simple protonation of the amine enables the formation of azetidinols as single diastereomers. We provide evidence, through ultrafast spectroscopy, for the electron transfer from free amines in the excited state. Further, we characterize aza-Yang re- action by establishing the dependence of initial reaction rates on rates of photon absorption. Unanticipated change in reactivity in morpholine analogs is explained through interactions with the tosylate anion. Buchner reaction proceeds with slight preference for one diastereomer over the other, and successful reaction requires electron-donating carbene-stabilizing substituents. Overall, sixteen compounds were prepared over seven steps. Guided by an increase in structural complexity, efforts such as this one extend reach of chemists into unexplored chemical space and provide useful quantities of new compounds for studies focused on their properties.

Ensemble Learning Approach with LASSO for Predicting Catalytic Reaction Rates

Synlett ◽  
2020 ◽  
Author(s):  
Akira Yada ◽  
Kazuhiko Sato ◽  
Tarojiro Matsumura ◽  
Yasunobu Ando ◽  
Kenji Nagata ◽  
...  
Keyword(s):  
Ensemble Learning ◽  
Reaction Rates ◽  
Initial Reaction Rate ◽  
Training Dataset ◽  
Initial Reaction ◽  
Learning Approach ◽  
Learning Framework ◽  
Machine Learning Approach ◽  
Reasonable Prediction ◽  
Epoxidation Of Alkenes

AbstractThe prediction of the initial reaction rate in the tungsten-catalyzed epoxidation of alkenes by using a machine learning approach is demonstrated. The ensemble learning framework used in this study consists of random sampling with replacement from the training dataset, the construction of several predictive models (weak learners), and the combination of their outputs. This approach enables us to obtain a reasonable prediction model that avoids the problem of overfitting, even when analyzing a small dataset.

scholarly journals Uptake of Zn, Pb, Cu and Fe Ions from Spent and Unspent Engine Oil Using Termite Soil

2017 ◽  
Vol 9 (3) ◽  
pp. 85
Author(s):  
Iwekumo Agbozu ◽  
Bassey Uwem ◽  
Boisa Ndokiari
Keyword(s):  
Contact Time ◽  
Diffusion Constant ◽  
Reaction Rates ◽  
Second Order ◽  
Engine Oil ◽  
Initial Reaction ◽  
Kinetics Equation ◽  
Spent Engine Oil ◽  
Pseudo Second Order ◽  
Fe Ions

Removal of Zn, Pb, Cu and Fe ions from unspent and spent engine oil was studied using Termite soil. Process parameters such as contact time and adsorbent dosage were varied. Values from contact time were used for predicting kinetics equation of their uptake. At optimum time of 40 minutes, percentage adsorption was of the order Fe>Zn>Cu>Pb for both spent and unspent engine oil. Kinetics equation such as Elovich, Intra-particle, Pseudo-first order and Pseudo-second order were tested. Results obtained shows that their sequestering pattern fit into the pseudo-second order kinetics. Initial reaction rates, h (mg/g.min) and α (mg. g-1min-1) for all metal ions obtained from Pseudo-second order and Elovich kinetic models followed the trends Zn>Fe>Cu>Pb and Zn>Fe>Pb>Cu respectively in spent engine oil while for unspent engine oil, the trend was Fe>Zn>Cu>Pb for h (mg/g.min) and Zn>Fe>Pb>Cu for α (mg. g-1min-1). Electrostatic attraction existing on the surface of the adsorbent assisted in the high initial reaction of Zn and Fe ions, implying good affinity of the ions for the adsorbent. Desorption constant ᵦ (g/mg) was of the trend Cu>Pb>Fe>Zn and Cu>Pb>Zn>Fe for spent and unspent engine oils respectively. Intra-particle diffusion constant kid (mgg-1min-1/2) followed a similar pattern, revealing strong binding between Zn and termite soil than any of the metal ion. This pilot research has been able to suggest a kinetic process for uptake of the studied ions from spent and unspent engine oil.

scholarly journals Analysis of a large food chemical database: chemical space, diversity, and complexity

F1000Research ◽  
2018 ◽  
Vol 7 ◽  
pp. 993 ◽  
Author(s):  
J. Jesús Naveja ◽  
Mariel P. Rico-Hidalgo ◽  
José L. Medina-Franco
Keyword(s):  
Natural Products ◽  
Chemical Space ◽  
Structural Complexity ◽  
Chemical Diversity ◽  
Chemical Structures ◽  
Novel Approach ◽  
Chemical Database ◽  
Protein Interactome ◽  
Limited Basis ◽  
Future Direction

Background: Food chemicals are a cornerstone in the food industry. However, its chemical diversity has been explored on a limited basis, for instance, previous analysis of food-related databases were done up to 2,200 molecules. The goal of this work was to quantify the chemical diversity of chemical compounds stored in FooDB, a database with nearly 24,000 food chemicals. Methods: The visual representation of the chemical space of FooDB was done with ChemMaps, a novel approach based on the concept of chemical satellites. The large food chemical database was profiled based on physicochemical properties, molecular complexity and scaffold content. The global diversity of FooDB was characterized using Consensus Diversity Plots. Results: It was found that compounds in FooDB are very diverse in terms of properties and structure, with a large structural complexity. It was also found that one third of the food chemicals are acyclic molecules and ring-containing molecules are mostly monocyclic, with several scaffolds common to natural products in other databases. Conclusions: To the best of our knowledge, this is the first analysis of the chemical diversity and complexity of FooDB. This study represents a step further to the emerging field of “Food Informatics”. Future study should compare directly the chemical structures of the molecules in FooDB with other compound databases, for instance, drug-like databases and natural products collections. An additional future direction of this work is to use the list of 3,228 polyphenolic compounds identified in this work to enhance the on-going polyphenol-protein interactome studies.

scholarly journals Studies on Epoxidation of Tung oil with Hydrogen Peroxide Catalyzed by Sulfuric Acid

2020 ◽  
Vol 15 (3) ◽  
pp. 674-686
Author(s):  
Eni Budiyati ◽  
Rochmadi Rochmadi ◽  
Arief Budiman ◽  
Budhijanto Budhijanto
Keyword(s):  
Hydrogen Peroxide ◽  
Sulfuric Acid ◽  
Unsaturated Fatty Acids ◽  
Catalyst Concentration ◽  
Reaction Rates ◽  
Catalytic Reactions ◽  
Side Reactions ◽  
Initial Reaction ◽  
Tung Oil ◽  
Epoxidation Reaction

Tung oil with an iodine value (IV) of 99.63 g I2/100 g was epoxidized in-situ with glacial acetic acid and hydrogen peroxide (H2O2), in the presence sulfuric acid as catalyst. The objective of this research was to evaluate the effect of mole ratio of H2O2 to unsaturated fatty acids (UFA), reaction time and catalyst concentration in Tung oil epoxidation. The reaction kinetics were also studied. Epoxidation was carried out for 4 h. The reaction rates and side reactions were evaluated based on the IV and the conversion of the epoxidized Tung oil to oxirane. Catalytic reactions resulted in higher reaction rate than did non-catalytic reactions. Increasing the catalyst concentration resulted in a large decrease in the IV and an increase in the conversion to oxirane at the initial reaction stage. However, higher catalyst concentration in the epoxidation reaction caused to a decrease in reaction selectivity. The mole ratio of H2O2 to UFA had an influence identical to the catalyst concentration. The recommended optimum mole ratio and catalyst concentration in this study were 1.6 and 1.5%, respectively. The highest conversion was 48.94% for a mole ratio of 1.6. The proposed kinetic model provided good results and was suitable for all variations in reaction temperature. The activation energy (Ea) values were around 5.7663 to 76.2442 kcal/mol. Copyright © 2020 BCREC Group. All rights reserved 

scholarly journals New Spiro[cycloalkane-pyridazinone] Derivatives with Favorable Fsp3 Character

Chemistry ◽  
2020 ◽  
Vol 2 (4) ◽  
pp. 837-848
Author(s):  
Csilla Sepsey Für ◽  
Hedvig Bölcskei
Keyword(s):  
High Throughput Screening ◽  
Pharmaceutical Companies ◽  
Compound Library ◽  
Aromatic Rings ◽  
Lead Discovery ◽  
Lipinski’S Rule ◽  
Design And Synthesis ◽  
Lipinski’S Rule Of Five ◽  
Pyridazinone Derivatives ◽  
New Compounds

The large originator pharmaceutical companies need more and more new compounds for their molecule banks, because high throughput screening (HTS) is still a widely used method to find new hits in the course of the lead discovery. In the design and synthesis of a new compound library, important points are in focus nowadays: Lipinski’s rule of five (RO5); the high Fsp3 character; the use of bioisosteric heterocycles instead of aromatic rings. With said aim in mind, we have synthesized a small compound library of new spiro[cycloalkane-pyridazinones] with 36 members. The compounds with this new scaffold may be useful in various drug discovery projects.

scholarly journals 5-Arylideneimidazolones with Amine at Position 3 as Potential Antibiotic Adjuvants against Multidrug Resistant Bacteria

Molecules ◽  
2019 ◽  
Vol 24 (3) ◽  
pp. 438 ◽  
Author(s):  
Aneta Kaczor ◽  
Karolina Witek ◽  
Sabina Podlewska ◽  
Joanna Czekajewska ◽  
Annamaria Lubelska ◽  
...  
Keyword(s):  
Efflux Pump ◽  
Enterobacter Aerogenes ◽  
Multidrug Resistant ◽  
Resistant Bacteria ◽  
Aromatic Rings ◽  
Efflux Pump Inhibitor ◽  
Fold Reduction ◽  
Dual Action ◽  
New Compounds

Searching for new chemosensitizers of bacterial multidrug resistance (MDR), chemical modifications of (Z)-5-(4-chlorobenzylidene)-2-(4-methylpiperazin-1-yl)-3H-imidazol-4(5H)-one (6) were performed. New compounds (7–17), with fused aromatic rings at position 5, were designed and synthesized. Crystallographic X-ray analysis proved that the final compounds (7–17) were substituted with tertiary amine-propyl moiety at position 3 and primary amine group at 2 due to intramolecular Dimroth rearrangement. New compounds were evaluated on their antibiotic adjuvant properties in either Gram-positive or Gram-negative bacteria. Efflux pump inhibitor (EPI) properties towards the AcrAB-TolC pump in Enterobacter aerogenes (EA289) were investigated in the real-time efflux (RTE) assay. Docking and molecular dynamics were applied to estimate an interaction of compounds 6–17 with penicillin binding protein (PBP2a). In vitro ADME-Tox properties were evaluated for compound 9. Most of the tested compounds reduced significantly (4-32-fold) oxacillin MIC in highly resistant MRSA HEMSA 5 strain. The anthracene-morpholine derivative (16) was the most potent (32-fold reduction). The tested compounds displayed significant EPI properties during RTE assay (37–97%). The naphthyl-methylpiperazine derivative 9 showed the most potent “dual action” of both oxacillin adjuvant (MRSA) and EPI (E. aerogenes). Molecular modeling results suggested the allosteric mechanism of action of the imidazolones, which improved binding of oxacillin in the PBP2a active site in MRSA.

scholarly journals Enhanced Catalytic Dye Decolorization by Microencapsulation of Laccase from P. Sanguineus CS43 in Natural and Synthetic Polymers

Polymers ◽  
2020 ◽  
Vol 12 (6) ◽  
pp. 1353
Author(s):  
Natalia Lopez-Barbosa ◽  
Ana Lucía Campaña ◽  
Juan C. Cruz ◽  
Nancy Ornelas-Soto ◽  
Johann F. Osma
Keyword(s):  
Catalytic Activity ◽  
Confocal Microscopy ◽  
Fluorescent Dyes ◽  
Fold Increase ◽  
Dye Decolorization ◽  
Reaction Rates ◽  
Lower Amount ◽  
Poly Vinyl Alcohol ◽  
Initial Reaction ◽  
Pycnoporus Sanguineus

Polymeric microcapsules with the fungal laccase from Pycnoporus sanguineus CS43 may represent an attractive avenue for the removal or degradation of dyes from wastewaters. Microcapsules of alginate/chitosan (9.23 ± 0.12 µm) and poly(styrenesulfonate) (PSS) (9.25 ± 0.35 µm) were synthesized and subsequently tested for catalytic activity in the decolorization of the diazo dye Congo Red. Successful encapsulation into the materials was verified via confocal microscopy of labeled enzyme molecules. Laccase activity was measured as a function of time and the initial reaction rates were recovered for each preparation, showing up to sevenfold increase with respect to free laccase. The ability of substrates to diffuse through the pores of the microcapsules was evaluated with the aid of fluorescent dyes and confocal microscopy. pH and thermal stability were also measured for encapsulates, showing catalytic activity for pH values as low as 4 and temperatures of about 80 °C. Scanning electron microscope (SEM) analyses demonstrated the ability of PSS capsules to avoid accumulation of byproducts and, therefore, superior catalytic performance. This was corroborated by the direct observation of substrates diffusing in and out of the materials. Compared with our PSS preparation, alginate/chitosan microcapsules studied by others degrade 2.6 times more dye, albeit with a 135-fold increase in units of enzyme per mg of dye. Similarly, poly(vinyl) alcohol microcapsules from degrade 1.7 times more dye, despite an eightfold increase in units of enzyme per mg of dye. This could be potentially beneficial from the economic viewpoint as a significantly lower amount of enzyme might be needed for the same decolorization level achieved with similar encapsulated systems.

scholarly journals Layer-Like Zeolite X as Catalyst in a Knoevenagel Condensation: The Effect of Different Preparation Pathways and Cation Exchange

Catalysts ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 474
Author(s):  
Jan-Paul Grass ◽  
Katharina Klühspies ◽  
Bastian Reiprich ◽  
Wilhelm Schwieger ◽  
Alexandra Inayat
Keyword(s):  
Catalytic Activity ◽  
Reaction Rate ◽  
Knoevenagel Condensation ◽  
Ethyl Cyanoacetate ◽  
Reaction Rates ◽  
Initial Reaction Rate ◽  
Comparative Investigation ◽  
Morphological Properties ◽  
Initial Reaction ◽  
Zeolite X

This study is dedicated to the comparative investigation of the catalytic activity of layer-like Faujasite-type (FAU) zeolite X obtained from three different synthesis routes (additive-free route, Li2CO3 route, and TPOAC route) in a liquid-phase Knoevenagel condensation of benzaldehyde and ethyl cyanoacetate to ethyl trans-α-cyanocinnamate. It is shown that the charge-balancing cations (Na+ and K+) and the morphological properties have a strong influence on the apparent reaction rate and degree of conversion. The highest initial reaction rate could be found for the layer-like zeolite X synthesised by the additive-free route in the potassium form. In most cases, the potassium-exchanged zeolites enabled higher maximum conversions and higher reaction rates compared to the zeolite X catalysts in sodium form. However, very thin crystal plates (below 100 nm thickness), similar to those obtained in the presence of TPOAC, did not withstand the multiple aqueous ion exchange procedure, with the remaining coarse crystals facilitating less enhancement of the catalytic activity.

Surface-Active Ionic Liquids in Catalytic Water Splitting

2019 ◽  
Vol 72 (2) ◽  
pp. 34 ◽  
Author(s):  
Alice Cognigni ◽  
Ádám Márk Palvögyi ◽  
Christian Schröder ◽  
Herwig Peterlik ◽  
Alexander R. M. Müllner ◽  
...  
Keyword(s):  
Ionic Liquids ◽  
Water Splitting ◽  
External Surface ◽  
Reaction Rates ◽  
Initial Reaction ◽  
Surface Active Ionic Liquid ◽  
Surface Active ◽  
Turn Over ◽  
Catalytic Cycles ◽  
Reaction Media

We report the application of surface-active ionic liquids as ligands and optional reaction media in iridium-catalyzed water oxidations. Three novel catalysts with N,N-dialkylimidazolidin-2-ylidene ligands based on amphiphilic imidazolium ionic liquids were synthesized and characterized. Excellent turn-over frequencies of up to 0.92s−1 were obtained in catalytic water splitting, and activity was maintained for five consecutive catalytic cycles, with an overall turn-over number of 8967. The addition of external surface-active ionic liquid showed unexpected behaviour, because strongly enhanced initial reaction rates were observed.

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