Fixation of Two Original Genus-Level Spellings in Reduviidae (Hemiptera)

2021 ◽  
Vol 130 (1) ◽  
Author(s):  
Daniel R. Swanson
Keyword(s):  
Genus Level

DETECTION OF ALFACORONAVIRUSES, BETACORONAVIRUSES AND ASTROVIRUSES IN BAT FECAL SAMPLES FROM MOSCOW REGION

2020 ◽  
Author(s):  
E.V. Korneenko ◽  
◽  
А.E. Samoilov ◽  
I.V. Artyushin ◽  
M.V. Safonova ◽  
...  
Keyword(s):  
High Throughput ◽  
Viral Genome ◽  
High Throughput Sequencing ◽  
Pcr Amplification ◽  
Moscow Region ◽  
Fecal Samples ◽  
Genus Level ◽  
Zoonotic Viruses ◽  
Reservoir Hosts ◽  
Blastn Search

In our study we analyzed viral RNA in bat fecal samples from Moscow region (Zvenigorod district) collected in 2015. To detect various virus families and genera in bat fecal samples we used PCR amplification of viral genome fragments, followed by high-throughput sequencing. Blastn search of unassembled reads revealed the presence of viruses from families Astroviridae, Coronaviridae and Herpesviridae. Assembly using SPAdes 3.14 yields contigs of length 460–530 b.p. which correspond to genome fragments of Coronaviridae and Astroviridae. The taxonomy of coronaviruses has been determined to the genus level. We also showed that one bat can be a reservoir of several virus genuses. Thus, the bats in the Moscow region were confirmed as reservoir hosts for potentially zoonotic viruses.

scholarly journals Entangling the Enemy: Ecological, Systematic and Medical Implications of Dermestid Beetle Hastisetae

Insects ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 436
Author(s):  
Enrico Ruzzier ◽  
Marcin Kadej ◽  
Andrea Di Giulio ◽  
Andrea Battisti
Keyword(s):  
Defensive Behavior ◽  
Digestive System ◽  
Living Environment ◽  
Morphological Features ◽  
Allergic Reactions ◽  
Stored Products ◽  
Genus Level ◽  
Basic Concepts ◽  
Source Of Information ◽  
Fine Morphology

Hastisetae are modified setae typical of Dermestidae Megatominae and are a primary defensive tool of both larvae and pupae against invertebrates and possibly vertebrates. Given their unique morphological features, hastisetae have recently been suggested as an additional character useful for larvae identification and possible source of information to clarify the systematics of Megatominae. Hastisetae are also recognized as important contaminants of stored products, work and living environment; in particular, the exposure to hastisetae seems to cause allergic reactions and the insurgence of skin rashes, asthma, conjunctivitis, and digestive system inflammation in humans. Starting from these basic concepts, the present paper provides a detailed description of the hastisetae of some Megatominae. Fine morphology of external and internal microstructures of the hastisetae is shown and compared at the genus level. The insertion on integument, the pedicel, the shaft, and the apical head are illustrated in detail, and the first observations of active defensive behavior based on hastisetae are recorded and presented. Possible implications to the systematics of skin beetles are proposed based on the results of the study.

scholarly journals Prokaryotic virus host predictor: a Gaussian model for host prediction of prokaryotic viruses in metagenomics

BMC Biology ◽  
2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Congyu Lu ◽  
Zheng Zhang ◽  
Zena Cai ◽  
Zhaozhong Zhu ◽  
Ye Qiu ◽  
...  
Keyword(s):  
Prediction Accuracy ◽  
Functional Characterization ◽  
Gaussian Model ◽  
Software Tool ◽  
Biological Properties ◽  
Rapid Identification ◽  
Taxonomic Assignment ◽  
Genus Level ◽  
Alignment Free ◽  
Archaeal Viruses

Abstract Background Viruses are ubiquitous biological entities, estimated to be the largest reservoirs of unexplored genetic diversity on Earth. Full functional characterization and annotation of newly discovered viruses requires tools to enable taxonomic assignment, the range of hosts, and biological properties of the virus. Here we focus on prokaryotic viruses, which include phages and archaeal viruses, and for which identifying the viral host is an essential step in characterizing the virus, as the virus relies on the host for survival. Currently, the method for determining the viral host is either to culture the virus, which is low-throughput, time-consuming, and expensive, or to computationally predict the viral hosts, which needs improvements at both accuracy and usability. Here we develop a Gaussian model to predict hosts for prokaryotic viruses with better performances than previous computational methods. Results We present here Prokaryotic virus Host Predictor (PHP), a software tool using a Gaussian model, to predict hosts for prokaryotic viruses using the differences of k-mer frequencies between viral and host genomic sequences as features. PHP gave a host prediction accuracy of 34% (genus level) on the VirHostMatcher benchmark dataset and a host prediction accuracy of 35% (genus level) on a new dataset containing 671 viruses and 60,105 prokaryotic genomes. The prediction accuracy exceeded that of two alignment-free methods (VirHostMatcher and WIsH, 28–34%, genus level). PHP also outperformed these two alignment-free methods much (24–38% vs 18–20%, genus level) when predicting hosts for prokaryotic viruses which cannot be predicted by the BLAST-based or the CRISPR-spacer-based methods alone. Requiring a minimal score for making predictions (thresholding) and taking the consensus of the top 30 predictions further improved the host prediction accuracy of PHP. Conclusions The Prokaryotic virus Host Predictor software tool provides an intuitive and user-friendly API for the Gaussian model described herein. This work will facilitate the rapid identification of hosts for newly identified prokaryotic viruses in metagenomic studies.

scholarly journals Comparative Immature Morphology of Brazilian Fire Ants (Hymenoptera: Formicidae:Solenopsis)

2012 ◽  
Vol 2012 ◽  
pp. 1-10 ◽  
Author(s):  
Eduardo Gonçalves Paterson Fox ◽  
Daniel Russ Solis ◽  
Mônica Lanzoni Rossi ◽  
Jacques Hubert Charles Delabie ◽  
Rodrigo Fernando de Souza ◽  
...  
Keyword(s):  
Intraspecific Variation ◽  
Solenopsis Invicta ◽  
Morphological Traits ◽  
Species Level ◽  
Fire Ants ◽  
Fire Ant ◽  
Solenopsis Geminata ◽  
Body Dimensions ◽  
Larval Instars ◽  
Genus Level

Although common in Brazil, the biology of the fire antSolenopsis saevissima(Smith) is still poorly studied. Larval descriptions are useful to genus-level ant systematics and sometimes to species-level taxonomy. This study presents a detailed description of juveniles ofS. saevissimafrom Brazil, which were compared with Brazilian specimens ofSolenopsis invictaBuren,Solenopsis geminata(Fabricius), andSolenopsis altipunctataPitts. Different larval instars were separated by diagnostic morphological traits which were confirmed by observing moults. Reproductive larvae could be easily sorted by their distinctive body dimensions and shape. Contrary to previous reports on this species, the larvae ofS. saevissimaproved to be generally identical to those ofS. invicta, while a few specimens resembled those of other close species, such asSolenopsis megergatesTrager. Mature larvae thus presented considerable intraspecific variation in some characters recently proposed to aid fire ant species separation (morphology of head hairs).

scholarly journals A Preliminary Survey on the Planktonic Biota in a Hypersaline Pond of Messolonghi Saltworks (W. Greece)

Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 270
Author(s):  
George N. Hotos
Keyword(s):  
New Species ◽  
Marine Fish ◽  
Broad Spectrum ◽  
Fish Larvae ◽  
Live Food ◽  
Preliminary Survey ◽  
Genus Level ◽  
Marine Fish Larvae ◽  
Alternaria Sp ◽  
Different Strains

During a survey in 2015, an impressive assemblage of organisms was found in a hypersaline pond of the Messolonghi saltworks. The salinity ranged between 50 and 180 ppt, and the organisms that were found fell into the categories of Cyanobacteria (17 species), Chlorophytes (4 species), Diatoms (23 species), Dinoflagellates (1 species), Protozoa (40 species), Rotifers (8 species), Copepods (1 species), Artemia sp., one nematode and Alternaria sp. (Fungi). Fabrea salina was the most prominent protist among all samples and salinities. This ciliate has the potential to be a live food candidate for marine fish larvae. Asteromonas gracilis proved to be a sturdy microalga, performing well in a broad spectrum of culture salinities. Most of the specimens were identified to the genus level only. Based on their morphology, as there are no relevant records in Greece, there is a possibility for some to be either new species or strikingly different strains of certain species recorded elsewhere.

scholarly journals Matrix-assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry (MALDI-TOF MS) as a Reliable Tool to Identify Species of Catalase-negative Gram-positive Cocci not Belonging to the Streptococcus Genus

2016 ◽  
Vol 10 (1) ◽  
pp. 202-208 ◽  
Author(s):  
Marisa Almuzara ◽  
Claudia Barberis ◽  
Viviana Rojas Velázquez ◽  
Maria Soledad Ramirez ◽  
Angela Famiglietti ◽  
...  
Keyword(s):  
Extraction Methods ◽  
Species Level ◽  
Ionization Time ◽  
Maldi Tof Ms ◽  
Genus Level ◽  
Maldi Tof ◽  
Flight Mass Spectrometry ◽  
Level Identification ◽  
Gram Positive Cocci ◽  
Tof Ms

Objective:To evaluate the performance of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry (MALDI-TOF MS) by using 190 Catalase-negative Gram-Positive Cocci (GPC) clinical isolates.Methods:All isolates were identified by conventional phenotypic tests following the proposed scheme by Ruoff and Christensen and MALDI-TOF MS (Bruker Daltonics, BD, Bremen, Germany). Two different extraction methods (direct transfer formic acid method on spot and ethanol formic acid extraction method) and different cut-offs for genus/specie level identification were used. The score cut-offs recommended by the manufacturer (≥ 2.000 for species-level, 1.700 to 1.999 for genus level and <1.700 no reliable identification) and lower cut-off scores (≥1.500 for genus level, ≥ 1.700 for species-level and score <1.500 no reliable identification) were considered for identification. A minimum difference of 10% between the top and next closest score was required for a different genus or species.MALDI-TOF MS identification was considered correct when the result obtained from MS database agreed with the phenotypic identification result.When both methods gave discordant results, the 16S rDNA orsodAgenes sequencing was considered as the gold standard identification method. The results obtained by MS concordant with genes sequencing, although discordant with conventional phenotyping, were considered correct. MS results discordant with 16S orsodA identification were considered incorrect.Results:Using the score cut-offs recommended by the manufacturer, 97.37% and 81.05% were correctly identified to genus and species level, respectively. On the other hand, using lower cut-off scores for identification, 97.89% and 94.21% isolates were correctly identified to genus and species level respectively by MALDI-TOF MS and no significant differences between the results obtained with two extraction methods were obtained.Conclusion:The results obtained suggest that MALDI-TOF MS has the potential of being an accurate tool for Catalase-negative GPC identification even for those species with difficult diagnosis asHelcococcus,Abiotrophia,Granulicatella, among others. Nevertheless, expansion of the library, especially including more strains with different spectra on the same species might overcome potential “intraspecies” variability problems. Moreover, a decrease of the identification scores for species and genus-level identification must be considered since it may improve the MALDI-TOF MS accuracy.

А new species of Alona Baird, 1843 (Cladocera: Chydoridae) from the ancient Lake Ohrid

Zootaxa ◽  
2018 ◽  
Vol 4526 (4) ◽  
pp. 434
Author(s):  
ARTEM Y. SINEV ◽  
CHARO LÓPEZ-BLANCO
Keyword(s):  
New Species ◽  
Ancient Lakes ◽  
Ancient Lake ◽  
Lake Ohrid ◽  
Genus Level ◽  
Palearctic Species ◽  
Level Group ◽  
A New Species

A new species of Cladocera, Alona begoniae sp. nov. (Anomopoda: Chydoridae) was found in ancient Lake Ohrid. Its habitus and outer morphology is similar to one of the most common Palearctic species, Coronatella rectangula (Sars, 1862), and this can be the main reason why it has remained undiscovered. A. begoniae sp. nov. belongs to the elegans-group of Alona s. lato, a relict genus-level group not formally recognised yet as a separate taxonomical unit. Its habitat seem to be sandy and stony substrates (at 2–12 m depth) bare of vegetation. The position of this new species within the Alona-like anomopods is evaluated and similarities with other cladocerans in ancient lakes are discussed. 

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