Space-for-time inferences about range-edge dynamics of tree species can be influenced by sampling biases

2020 ◽  
Author(s):  
Ming Ni ◽  
Mark Vellend

Differences between the distributions of tree saplings and adults in geographic or niche space have been used to infer climate change effects on tree range dynamics. Previous studies have reported narrower latitudinal or climatic niche ranges of juvenile trees compared to adults, concluding that tree ranges are contracting, contradicting climate-based predictions. However, more comprehensive sampling of adult trees than juvenile trees in most regional forest inventories could potentially bias ontogenetic comparisons. Here we first report spatial simulations showing that reduced sampling intensity can result in underestimates of range and niche limits, but that resampling the same number of individuals of different life stages can eliminate this bias. We then re-analyzed the U.S. Forest Inventory and Analysis data, comparing the range and niche limits between adult trees and saplings of 92 tree species, both using the original data and two re-sampling procedures. Resampling aimed to reduce sampling biases by controlling for either sampling area or the number of individuals sampled. Overall, these resampling procedures had a major influence on the estimation of range limits, most often by reducing, eliminating, or even reversing the tendency in the original analyses for saplings to have broader distributions than adult trees. These results indicate that previous conclusions that the distributions of juvenile trees were contracting in response to climate change were potentially artefacts of sampling in the underlying data. More generally, sampling effects involved in the estimation of geographical ranges and environmental niche widths need to be taken into account in studies comparing different life stages, and also likely in other types of distribution comparisons.

1997 ◽  
Vol 13 (5) ◽  
pp. 641-658 ◽  
Author(s):  
Renato Cintra

ABSTRACTField experiments and survival analysis were used to test whether the Janzen-Connell model operated for two common Amazonian tree species in Peru: the midstorey palm, Astrocaryum murumuru, and the canopy-emergent legume, Dipteryx micrantha. Seed and seedling survival patterns of these species partially supported the model, depending on tree species, type of predator, spatial scale and the particular year. At a small scale of a 2.5-ha plot, Astrocaryum seed predation by insects and mammals was density-dependent. At a larger scale of 100 ha, Dipteryx seed survival increased with distance from conspecific adults, but for Astrocaryum seeds there was no distance dependence. At the scale of 200–400 ha Dipteryx seed survival was negatively related to the number of individuals present in groups of conspecific adult trees. In 1992 a higher proportion of Astrocaryum seedlings survived far from, compared with close to, conspecific adult trees, whilst in 1993 more Dipteryx seedlings survived beneath conspecific adult trees than farther away.


2014 ◽  
Vol 20 (8) ◽  
pp. 872-883 ◽  
Author(s):  
Beatriz Ibáñez ◽  
Inés Ibáñez ◽  
Lorena Gómez-Aparicio ◽  
Paloma Ruiz-Benito ◽  
Luis V. García ◽  
...  

Forests ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 427
Author(s):  
Tianyang Zhou ◽  
Jiaxin Zhang ◽  
Yunzhi Qin ◽  
Mingxi Jiang ◽  
Xiujuan Qiao

From supporting wood production to mitigating climate change, forest ecosystem services are crucial to the well-being of humans. Understanding the mechanisms that drive forest dynamics can help us infer how to maintain forest ecosystem services and how to improve predictions of forest dynamics under climate change. Despite the growing number of studies exploring above ground biomass (AGB) dynamics, questions of dynamics in biodiversity and in number of individuals still remain unclear. Here, we first explored the patterns of community dynamics in different aspects (i.e., AGB, density and biodiversity) based on short-term (five years) data from a 25-ha permanent plot in a subtropical forest in central China. Second, we examined the relationships between community dynamics and biodiversity and functional traits. Third, we identified the key factors affecting different aspects of community dynamics and quantified their relative contributions. We found that in the short term (five years), net above ground biomass change (ΔAGB) and biodiversity increased, while the number of individuals decreased. Resource-conservation traits enhanced the ΔAGB and reduced the loss in individuals, while the resource-acquisition traits had the opposite effect. Furthermore, the community structure contributed the most to ΔAGB; topographic variables and soil nutrients contributed the most to the number of individuals; demographic process contributed the most to biodiversity. Our results indicate that biotic factors mostly affected the community dynamics of ΔAGB and biodiversity, while the number of individuals was mainly shaped by abiotic factors. Our work highlighted that the factors influencing different aspects of community dynamics vary. Therefore, forest management practices should be formulated according to a specific protective purpose.


Plants ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 768
Author(s):  
Jerónimo Vázquez-Ramírez ◽  
Susanna E. Venn

The early life-history stages of plants, such as germination and seedling establishment, depend on favorable environmental conditions. Changes in the environment at high altitude and high latitude regions, as a consequence of climate change, will significantly affect these life stages and may have profound effects on species recruitment and survival. Here, we synthesize the current knowledge of climate change effects on treeline, tundra, and alpine plants’ early life-history stages. We systematically searched the available literature on this subject up until February 2020 and recovered 835 potential articles that matched our search terms. From these, we found 39 studies that matched our selection criteria. We characterized the studies within our review and performed a qualitative and quantitative analysis of the extracted meta-data regarding the climatic effects likely to change in these regions, including projected warming, early snowmelt, changes in precipitation, nutrient availability and their effects on seed maturation, seed dormancy, germination, seedling emergence and seedling establishment. Although the studies showed high variability in their methods and studied species, the qualitative and quantitative analysis of the extracted data allowed us to detect existing patterns and knowledge gaps. For example, warming temperatures seemed to favor all studied life stages except seedling establishment, a decrease in precipitation had a strong negative effect on seed stages and, surprisingly, early snowmelt had a neutral effect on seed dormancy and germination but a positive effect on seedling establishment. For some of the studied life stages, data within the literature were too limited to identify a precise effect. There is still a need for investigations that increase our understanding of the climate change impacts on high altitude and high latitude plants’ reproductive processes, as this is crucial for plant conservation and evidence-based management of these environments. Finally, we make recommendations for further research based on the identified knowledge gaps.


Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Zhi-Ping Zhong ◽  
Funing Tian ◽  
Simon Roux ◽  
M. Consuelo Gazitúa ◽  
Natalie E. Solonenko ◽  
...  

Abstract Background Glacier ice archives information, including microbiology, that helps reveal paleoclimate histories and predict future climate change. Though glacier-ice microbes are studied using culture or amplicon approaches, more challenging metagenomic approaches, which provide access to functional, genome-resolved information and viruses, are under-utilized, partly due to low biomass and potential contamination. Results We expand existing clean sampling procedures using controlled artificial ice-core experiments and adapted previously established low-biomass metagenomic approaches to study glacier-ice viruses. Controlled sampling experiments drastically reduced mock contaminants including bacteria, viruses, and free DNA to background levels. Amplicon sequencing from eight depths of two Tibetan Plateau ice cores revealed common glacier-ice lineages including Janthinobacterium, Polaromonas, Herminiimonas, Flavobacterium, Sphingomonas, and Methylobacterium as the dominant genera, while microbial communities were significantly different between two ice cores, associating with different climate conditions during deposition. Separately, ~355- and ~14,400-year-old ice were subject to viral enrichment and low-input quantitative sequencing, yielding genomic sequences for 33 vOTUs. These were virtually all unique to this study, representing 28 novel genera and not a single species shared with 225 environmentally diverse viromes. Further, 42.4% of the vOTUs were identifiable temperate, which is significantly higher than that in gut, soil, and marine viromes, and indicates that temperate phages are possibly favored in glacier-ice environments before being frozen. In silico host predictions linked 18 vOTUs to co-occurring abundant bacteria (Methylobacterium, Sphingomonas, and Janthinobacterium), indicating that these phages infected ice-abundant bacterial groups before being archived. Functional genome annotation revealed four virus-encoded auxiliary metabolic genes, particularly two motility genes suggest viruses potentially facilitate nutrient acquisition for their hosts. Finally, given their possible importance to methane cycling in ice, we focused on Methylobacterium viruses by contextualizing our ice-observed viruses against 123 viromes and prophages extracted from 131 Methylobacterium genomes, revealing that the archived viruses might originate from soil or plants. Conclusions Together, these efforts further microbial and viral sampling procedures for glacier ice and provide a first window into viral communities and functions in ancient glacier environments. Such methods and datasets can potentially enable researchers to contextualize new discoveries and begin to incorporate glacier-ice microbes and their viruses relative to past and present climate change in geographically diverse regions globally.


2015 ◽  
Vol 342 ◽  
pp. 21-29 ◽  
Author(s):  
M.M. Carón ◽  
P. De Frenne ◽  
J. Brunet ◽  
O. Chabrerie ◽  
S.A.O. Cousins ◽  
...  

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