scholarly journals Reconciling Imbalanced Transition State Effects with Nonadiabatic CPET Reactions

Author(s):  
Joseph Schneider ◽  
McKenna Goetz ◽  
John Anderson

Recently there have been several experimental demonstrations of how concerted proton electron transfer (CPET) reaction rates are affected by off-main-diagonal energies, namely the stepwise thermodynamic parameters ΔG°PT and ΔG°ET. Semi-classical structure-activity relationships have been invoked to rationalize these asynchronous linear free energy relation-ships despite the widely acknowledged importance of quantum effects such as nonadiabaticity and tunneling in CPET reactions. Here we report variable temperature kinetic isotope effect data for the asynchronous reactivity of a terminal Co-oxo complex with C–H bonds and find evidence of substantial quantum tunneling which is inconsistent with semi-classical models even when including tunneling corrections. This indicates substantial nonadiabatic tunneling in the CPET reactivity of this Co-oxo complex and further motivates the need for a quantum mechanical justification for the in-fluence of ΔG°PT and ΔG°ET on reactivity. To reconcile this dichotomy, we include ΔG°PT and ΔG°ET in nonadiabatic models of CPET by having them influence the anharmonicity and depth of the proton potential energy surfaces, which we approximate as Morse potentials. With this model we independently reproduce the dominant trend with ΔG°PT + ΔG°ET as well as the subtle effect of ΔG°PT − ΔG°ET (or η) in a nonadiabatic framework. The primary route through which these off-diagonal energies influence rates is through vibronic coupling. Our results reconcile predictions from semiclassical transition state theory with models that treat proton transfer quantum mechanically in CPET reactivity and suggest that similar treatments may be possible for other nonadiabatic processes.

2001 ◽  
Vol 34 (4) ◽  
pp. 563-679 ◽  
Author(s):  
Arieh Warshel ◽  
William W. Parson

1. Introduction 5632. Obtaining rate constants from molecular-dynamics simulations 5642.1 General relationships between quantum electronic structures and reaction rates 5642.2 The transition-state theory (TST) 5692.3 The transmission coefficient 5723. Simulating biological electron-transfer reactions 5753.1 Semi-classical surface-hopping and the Marcus equation 5753.2 Treating quantum mechanical nuclear tunneling by the dispersed-polaron/spin-boson method 5803.3 Density-matrix treatments 5833.4 Charge separation in photosynthetic bacterial reaction centers 5844. Light-induced photoisomerizations in rhodopsin and bacteriorhodopsin 5965. Energetics and dynamics of enzyme reactions 6145.1 The empirical-valence-bond treatment and free-energy perturbation methods 6145.2 Activation energies are decreased in enzymes relative to solution, often by electrostatic effects that stabilize the transition state 6205.3 Entropic effects in enzyme catalysis 6275.4 What is meant by dynamical contributions to catalysis? 6345.5 Transmission coefficients are similar for corresponding reactions in enzymes and water 6365.6 Non-equilibrium solvation effects contribute to catalysis mainly through Δg[Dagger], not the transmission coefficient 6415.7 Vibrationally assisted nuclear tunneling in enzyme catalysis 6485.8 Diffusive processes in enzyme reactions and transmembrane channels 6516. Concluding remarks 6587. Acknowledgements 6588. References 658Obtaining a detailed understanding of the dynamics of a biochemical reaction is a formidable challenge. Indeed, it might appear at first sight that reactions in proteins are too complex to analyze microscopically. At room temperature, even a relatively small protein can have as many as 1034 accessible conformational states (Dill, 1985). In many cases, however, we have detailed structural information about the active site of an enzyme, whereas such information is missing for corresponding chemical systems in solution. The atomic coordinates of the chromophore in bacteriorhodopsin, for example, are known to a resolution of 1–2 Å. In addition, experimental studies of biological processes such as photoisomerization and electron transfer have provided a wealth of detailed information that eventually may make some of these processes classical problems in chemical physics as well as biology.


1994 ◽  
Vol 223 (5-6) ◽  
pp. 459-464 ◽  
Author(s):  
Michael J. Cohen ◽  
Andrew Willetts ◽  
Nicholas C. Handy

2006 ◽  
Vol 125 (6) ◽  
pp. 064312 ◽  
Author(s):  
A. J. C. Varandas ◽  
P. J. S. B. Caridade ◽  
J. Z. H. Zhang ◽  
Q. Cui ◽  
K. L. Han

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