scholarly journals Changing Ecological Conditions in the Marine Environment Generate Different Microbial Food Web Structures in a Repeatable Manner

2022 ◽  
Vol 8 ◽  
Author(s):  
Mladen Šolić ◽  
Danijela Šantić ◽  
Stefanija Šestanović ◽  
Grozdan Kušpilić ◽  
Frano Matić ◽  
...  

The mechanisms responsible for the development of various structural and functional features of the microbial food web (MFW) and their dynamics at spatial and temporal scales, which are important for predicting their responses to future environmental changes, are largely unknown. More than 3000 datasets of environmental and microbial variables collected over a decade on a seasonal and large spatial scale in the Adriatic Sea were analyzed. The sets of environmental variables were classified into four clusters (representing different environmental states) using Neural Gas analysis and the differences in MFW structure between the clusters were analyzed. Different variants of MFW evolve in the different clusters in terms of the abundance of MFW components, their ratios, growth and grazing rates, predator preference in prey selection, the strength of predator-prey interaction, and the relative importance of top-down and bottom-up control. However, these clusters are neither spatially nor temporally fixed; rather, the area studied represents a mosaic of different environmental conditions that alternate from one state to another on a time scale. In each of the environmental states, a distinct structure of MFW develops that shows consistent and repeatable changes that strictly follow the switching in environmental conditions from one state to another.

2021 ◽  
Author(s):  
Smita Mitbavkar ◽  
Samantha D'souza

Abstract The composition and ecology of photosynthetic picoeukaryotes (PPEUK) are essential for microbial food web functioning. We hypothesize that the simultaneous use of flow cytometry (FCM) and High-Performance-Liquid-Chromatography (HPLC) tools will aid in discerning the dominant PPEUK groups contributing to abundance and biomass under prevailing environmental conditions. The PPEUK seasonal community abundance and pigment biomass were investigated from a south-west monsoon influenced tropical bay from June 2015-May 2016. A size-fractionated (< 3 µm) approach using FCM and HPLC revealed five and six PPEUK groups, respectively. Picocryptophytes dominated the PPEUK biomass under varied environmental conditions, whereas Picodiatoms contributed substantially, being abundant under turbulent, low-temperature, nutrient (NO3−, SiO44−) enriched conditions. The Picochlorophytes dominated the community numerically. The relatively higher abundance and biomass of Picoprasinophytes and a positive correlation with NO3− and NH4+ imply proliferation under higher nutrient concentrations. The least contributors to biomass were Picodinoflagellates and Picoprymnesiophytes. The relatively larger cell size of Picocryptophytes and Picodiatoms resulted in higher cumulative biomass, signifying their role in the microbial food web. Our study proposes incorporation of additional indicator pigments in algorithms used to estimate coastal picophytoplankton contribution to total phytoplankton biomass to avoid discrepancies.


mBio ◽  
2018 ◽  
Vol 9 (4) ◽  
Author(s):  
Huan Chen ◽  
Edward A. Laws ◽  
Julio L. Martin ◽  
Timkhite-Kulu Berhane ◽  
Paul A. Gulig ◽  
...  

ABSTRACTThe role of protists and bacteriophages in bacterial predation in the microbial food web has been well studied. There is mounting evidence thatBdellovibrioand like organisms (BALOs) also contribute to bacterial mortality and, in some cases, more so than bacteriophages. A full understanding of the ecologic function of the microbial food web requires recognition of all major predators and the magnitude of each predator’s contribution. Here we investigated the contribution ofHalobacteriovorax, one of the BALOs, and bacteriophages when incubated with their common prey,Vibrio vulnificus, in a seawater microcosm. We observed thatHalobacteriovoraxwas the greatest responder to the prey, increasing 18-fold with a simultaneous 4.4-log-unit reduction ofV. vulnificusat 40 h, whereas the bacteriophage population showed no significant increase. In subsequent experiments to formulate a medium that would support the predatory activities and replication of both predators, low-nutrient media favored the predation and replication of theHalobacteriovorax, whereas higher-nutrient media enhanced phage growth. The greatest prey reduction and replication of bothHalobacteriovoraxand phage were observed in media with moderate nutrient levels. Additional experiments show that the predatory activities of both predators were influenced by environmental conditions, specifically, temperature and salinity. The two predators combined exerted greater control onV. vulnificus, a synergism that may be exploited for practical applications to reduce bacterial populations. These findings suggest that along with bacteriophage and protists,Halobacteriovoraxhas the potential to have a prominent role in bacterial mortality and cycling of nutrients, two vital ecologic functions.IMPORTANCEAlthough much has been reported about the marine microbial food web and the role of micropredators, specifically viruses and protists, the contribution ofBdellovibrio-like predators has largely been ignored, posing a major gap in understanding food web processes. A complete scenario of the microbial food web cannot be developed until the roles of all major micropredators and the magnitude of their contributions to bacterial mortality, structuring of microbial communities, and cycling of nutrients are assessed. Here we show compelling evidence thatHalobacteriovorax, a predatory bacterium, is a significant contributor to bacterial death and, in some cases, may rival viruses as agents of bacterial mortality. These results advance current understanding of the microbial loop and top-down control on the bacterial community.


2021 ◽  
Vol 7 (6) ◽  
pp. 482
Author(s):  
Elisa Gómez-Gil ◽  
Alejandro Franco ◽  
Beatriz Vázquez-Marín ◽  
Francisco Prieto-Ruiz ◽  
Armando Pérez-Díaz ◽  
...  

Mitogen activated protein kinase (MAPK) signaling pathways execute essential functions in eukaryotic organisms by transducing extracellular stimuli into adaptive cellular responses. In the fission yeast model Schizosaccharomyces pombe the cell integrity pathway (CIP) and its core effector, MAPK Pmk1, play a key role during regulation of cell integrity, cytokinesis, and ionic homeostasis. Schizosaccharomyces japonicus, another fission yeast species, shows remarkable differences with respect to S. pombe, including a robust yeast to hyphae dimorphism in response to environmental changes. We show that the CIP MAPK module architecture and its upstream regulators, PKC orthologs Pck1 and Pck2, are conserved in both fission yeast species. However, some of S. pombe’s CIP-related functions, such as cytokinetic control and response to glucose availability, are regulated differently in S. japonicus. Moreover, Pck1 and Pck2 antagonistically regulate S. japonicus hyphal differentiation through fine-tuning of Pmk1 activity. Chimeric MAPK-swapping experiments revealed that S. japonicus Pmk1 is fully functional in S. pombe, whereas S. pombe Pmk1 shows a limited ability to execute CIP functions and promote S. japonicus mycelial development. Our findings also suggest that a modified N-lobe domain secondary structure within S. japonicus Pmk1 has a major influence on the CIP signaling features of this evolutionarily diverged fission yeast.


2021 ◽  
Vol 9 (2) ◽  
pp. 317
Author(s):  
Dolors Vaqué ◽  
Julia A. Boras ◽  
Jesús Maria Arrieta ◽  
Susana Agustí ◽  
Carlos M. Duarte ◽  
...  

The ocean surface microlayer (SML), with physicochemical characteristics different from those of subsurface waters (SSW), results in dense and active viral and microbial communities that may favor virus–host interactions. Conversely, wind speed and/or UV radiation could adversely affect virus infection. Furthermore, in polar regions, organic and inorganic nutrient inputs from melting ice may increase microbial activity in the SML. Since the role of viruses in the microbial food web of the SML is poorly understood in polar oceans, we aimed to study the impact of viruses on prokaryotic communities in the SML and in the SSW in Arctic and Antarctic waters. We hypothesized that a higher viral activity in the SML than in the SSW in both polar systems would be observed. We measured viral and prokaryote abundances, virus-mediated mortality on prokaryotes, heterotrophic and phototrophic nanoflagellate abundance, and environmental factors. In both polar zones, we found small differences in environmental factors between the SML and the SSW. In contrast, despite the adverse effect of wind, viral and prokaryote abundances and virus-mediated mortality on prokaryotes were higher in the SML than in the SSW. As a consequence, the higher carbon flux released by lysed cells in the SML than in the SSW would increase the pool of dissolved organic carbon (DOC) and be rapidly used by other prokaryotes to grow (the viral shunt). Thus, our results suggest that viral activity greatly contributes to the functioning of the microbial food web in the SML, which could influence the biogeochemical cycles of the water column.


1994 ◽  
Vol 28 (2) ◽  
pp. 303-319 ◽  
Author(s):  
H. W. Ducklow
Keyword(s):  
Food Web ◽  

2005 ◽  
Vol 39 (3) ◽  
pp. 263-270 ◽  
Author(s):  
Hiroyuki Ueno ◽  
Toshiya Katano ◽  
Shin-Ichi Nakano ◽  
Osamu Mitamura ◽  
Kaori Anbutsu ◽  
...  

2021 ◽  
Author(s):  
Ruben Ceulemans ◽  
Laurie Anne Myriam Wojcik ◽  
Ursula Gaedke

Biodiversity decline causes a loss of functional diversity, which threatens ecosystems through a dangerous feedback loop: this loss may hamper ecosystems' ability to buffer environmental changes, leading to further biodiversity losses. In this context, the increasing frequency of climate and human-induced excessive loading of nutrients causes major problems in aquatic systems. Previous studies investigating how functional diversity influences the response of food webs to disturbances have mainly considered systems with at most two functionally diverse trophic levels. Here, we investigate the effects of a nutrient pulse on the resistance, resilience and elasticity of a tritrophic---and thus more realistic---plankton food web model depending on its functional diversity. We compare a non-adaptive food chain with no diversity to a highly diverse food web with three adaptive trophic levels. The species fitness differences are balanced through trade-offs between defense/growth rate for prey and selectivity/half-saturation constant for predators. We showed that the resistance, resilience and elasticity of tritrophic food webs decreased with larger perturbation sizes and depended on the state of the system when the perturbation occured. Importantly, we found that a more diverse food web was generally more resistant, resilient, and elastic. Particularly, functional diversity dampened the probability of a regime shift towards a non-desirable alternative state. In addition, despite the complex influence of the shape and type of the dynamical attractors, the basal-intermediate interaction determined the robustness against a nutrient pulse. This relationship was strongly influenced by the diversity present and the third trophic level. Overall, using a food web model of realistic complexity, this study confirms the destructive potential of the positive feedback loop between biodiversity loss and robustness, by uncovering mechanisms leading to a decrease in resistance, resilience and elasticity as functional diversity declines.


2018 ◽  
Vol 115 (44) ◽  
pp. 11156-11161 ◽  
Author(s):  
Rona Shaharabani ◽  
Maor Ram-On ◽  
Yeshayahu Talmon ◽  
Roy Beck

Multiple sclerosis (MS) is an autoimmune disease, leading to the destruction of the myelin sheaths, the protective layers surrounding the axons. The etiology of the disease is unknown, although there are several postulated environmental factors that may contribute to it. Recently, myelin damage was correlated to structural phase transition from a healthy stack of lamellas to a diseased inverted hexagonal phase as a result of the altered lipid stoichiometry and low myelin basic protein (MBP) content. In this work, we show that environmental conditions, such as buffer salinity and temperature, induce the same pathological phase transition as in the case of the lipid composition in the absence of MBP. These phase transitions have different transition points, which depend on the lipid’s compositions, and are ion specific. In extreme environmental conditions, we find an additional dense lamellar phase and that the native lipid composition results in similar pathology as the diseased composition. These findings demonstrate that several local environmental changes can trigger pathological structural changes. We postulate that these structural modifications result in myelin membrane vulnerability to the immune system attacks and thus can help explain MS etiology.


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