scholarly journals Bacterial Indicators Are Ubiquitous Members of Pelagic Microbiome in Anthropogenically Impacted Coastal Ecosystem

2022 ◽  
Vol 12 ◽  
Author(s):  
Neža Orel ◽  
Eduard Fadeev ◽  
Katja Klun ◽  
Matjaž Ličer ◽  
Tinkara Tinta ◽  
...  

Coastal zones are exposed to various anthropogenic impacts, such as different types of wastewater pollution, e.g., treated wastewater discharges, leakage from sewage systems, and agricultural and urban runoff. These various inputs can introduce allochthonous organic matter and microbes, including pathogens, into the coastal marine environment. The presence of fecal bacterial indicators in the coastal environment is usually monitored using traditional culture-based methods that, however, fail to detect their uncultured representatives. We have conducted a year-around in situ survey of the pelagic microbiome of the dynamic coastal ecosystem, subjected to different anthropogenic pressures to depict the seasonal and spatial dynamics of traditional and alternative fecal bacterial indicators. To provide an insight into the environmental conditions under which bacterial indicators thrive, a suite of environmental factors and bacterial community dynamics were analyzed concurrently. Analyses of 16S rRNA amplicon sequences revealed that the coastal microbiome was primarily structured by seasonal changes regardless of the distance from the wastewater pollution sources. On the other hand, fecal bacterial indicators were not affected by seasons and accounted for up to 34% of the sequence proportion for a given sample. Even more so, traditional fecal indicator bacteria (Enterobacteriaceae) and alternative wastewater-associated bacteria (Lachnospiraceae, Ruminococcaceae, Arcobacteraceae, Pseudomonadaceae and Vibrionaceae) were part of the core coastal microbiome, i.e., present at all sampling stations. Microbial source tracking and Lagrangian particle tracking, which we employed to assess the potential pollution source, revealed the importance of riverine water as a vector for transmission of allochthonous microbes into the marine system. Further phylogenetic analysis showed that the Arcobacteraceae in our data set was affiliated with the pathogenic Arcobacter cryaerophilus, suggesting that a potential exposure risk for bacterial pathogens in anthropogenically impacted coastal zones remains. We emphasize that molecular analyses combined with statistical and oceanographic models may provide new insights for environmental health assessment and reveal the potential source and presence of microbial indicators, which are otherwise overlooked by a cultivation approach.

2009 ◽  
Vol 43 (1) ◽  
pp. 21-32 ◽  
Author(s):  
Caroline S. Roy ◽  
Guylaine Talbot ◽  
Edward Topp ◽  
Carole Beaulieu ◽  
Marie-France Palin ◽  
...  

Water ◽  
2021 ◽  
Vol 13 (2) ◽  
pp. 159
Author(s):  
Chiara Leone ◽  
Francesca De Luca ◽  
Eleonora Ciccotti ◽  
Arianna Martini ◽  
Clara Boglione

Mediterranean coastal lagoons are increasingly affected by several threats, all concurrently leading to habitat degradation and loss. Methods based on fish for the assessment of the ecological status are under implementation for the Water Framework Directive requirements, to assess the overall quality of coastal lagoons. Complementary tools based on the use of single fish species as biological indicators could be useful as early detection methods of anthropogenic impacts. The analysis of skeletal anomalies in the big-scale sand smelt, Atherina boyeri, from nine Mediterranean coastal lagoons in Italy was carried out. Along with the morphological examination of fish, the environmental status of the nine lagoons was evaluated using a method based on expert judgement, by selecting and quantifying several environmental descriptors of direct and indirect human pressures acting on lagoon ecosystems. The average individual anomaly load and the frequency of individuals with severe anomalies allow to discriminate big-scale sand smelt samples on the basis of the site and of its quality status. Furthermore, a relationship between skeletal anomalies and the environmental quality of specific lagoons, driven by the anthropogenic pressures acting on them, was found. These findings support the potentiality of skeletal anomalies monitoring in big-scale sand smelt as a tool for early detection of anthropogenic impacts in coastal lagoons of the Mediterranean region.


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