scholarly journals Using Base-ml to Learn Classification of Common Vestibular Disorders on DizzyReg Registry Data

2021 ◽  
Vol 12 ◽  
Author(s):  
Gerome Vivar ◽  
Ralf Strobl ◽  
Eva Grill ◽  
Nassir Navab ◽  
Andreas Zwergal ◽  
...  
Keyword(s):  
Logistic Regression ◽  
Deep Learning ◽  
Classification Accuracy ◽  
Software Tool ◽  
Clinical Decision ◽  
Support Vector ◽  
Vestibular Disorders ◽  
Neural Network Models ◽  
Clinical Patient

Background: Multivariable analyses (MVA) and machine learning (ML) applied on large datasets may have a high potential to provide clinical decision support in neuro-otology and reveal further avenues for vestibular research. To this end, we build base-ml, a comprehensive MVA/ML software tool, and applied it to three increasingly difficult clinical objectives in differentiation of common vestibular disorders, using data from a large prospective clinical patient registry (DizzyReg).Methods: Base-ml features a full MVA/ML pipeline for classification of multimodal patient data, comprising tools for data loading and pre-processing; a stringent scheme for nested and stratified cross-validation including hyper-parameter optimization; a set of 11 classifiers, ranging from commonly used algorithms like logistic regression and random forests, to artificial neural network models, including a graph-based deep learning model which we recently proposed; a multi-faceted evaluation of classification metrics; tools from the domain of “Explainable AI” that illustrate the input distribution and a statistical analysis of the most important features identified by multiple classifiers.Results: In the first clinical task, classification of the bilateral vestibular failure (N = 66) vs. functional dizziness (N = 346) was possible with a classification accuracy ranging up to 92.5% (Random Forest). In the second task, primary functional dizziness (N = 151) vs. secondary functional dizziness (following an organic vestibular syndrome) (N = 204), was classifiable with an accuracy ranging from 56.5 to 64.2% (k-nearest neighbors/logistic regression). The third task compared four episodic disorders, benign paroxysmal positional vertigo (N = 134), vestibular paroxysmia (N = 49), Menière disease (N = 142) and vestibular migraine (N = 215). Classification accuracy ranged between 25.9 and 50.4% (Naïve Bayes/Support Vector Machine). Recent (graph-) deep learning models classified well in all three tasks, but not significantly better than more traditional ML methods. Classifiers reliably identified clinically relevant features as most important toward classification.Conclusion: The three clinical tasks yielded classification results that correlate with the clinical intuition regarding the difficulty of diagnosis. It is favorable to apply an array of MVA/ML algorithms rather than a single one, to avoid under-estimation of classification accuracy. Base-ml provides a systematic benchmarking of classifiers, with a standardized output of MVA/ML performance on clinical tasks. To alleviate re-implementation efforts, we provide base-ml as an open-source tool for the community.

scholarly journals An Imbalanced Image Classification Method for the Cell Cycle Phase

Information ◽  
2021 ◽  
Vol 12 (6) ◽  
pp. 249
Author(s):  
Xin Jin ◽  
Yuanwen Zou ◽  
Zhongbing Huang
Keyword(s):  
Cell Cycle ◽  
Deep Learning ◽  
Image Classification ◽  
Classification Accuracy ◽  
Data Augmentation ◽  
Cycle Phase ◽  
Generative Adversarial Network ◽  
Adversarial Network ◽  
Cellular Life

The cell cycle is an important process in cellular life. In recent years, some image processing methods have been developed to determine the cell cycle stages of individual cells. However, in most of these methods, cells have to be segmented, and their features need to be extracted. During feature extraction, some important information may be lost, resulting in lower classification accuracy. Thus, we used a deep learning method to retain all cell features. In order to solve the problems surrounding insufficient numbers of original images and the imbalanced distribution of original images, we used the Wasserstein generative adversarial network-gradient penalty (WGAN-GP) for data augmentation. At the same time, a residual network (ResNet) was used for image classification. ResNet is one of the most used deep learning classification networks. The classification accuracy of cell cycle images was achieved more effectively with our method, reaching 83.88%. Compared with an accuracy of 79.40% in previous experiments, our accuracy increased by 4.48%. Another dataset was used to verify the effect of our model and, compared with the accuracy from previous results, our accuracy increased by 12.52%. The results showed that our new cell cycle image classification system based on WGAN-GP and ResNet is useful for the classification of imbalanced images. Moreover, our method could potentially solve the low classification accuracy in biomedical images caused by insufficient numbers of original images and the imbalanced distribution of original images.

scholarly journals Deep Learning Methods for Classification of Certain Abnormalities in Echocardiography

Electronics ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 495
Author(s):  
Imayanmosha Wahlang ◽  
Arnab Kumar Maji ◽  
Goutam Saha ◽  
Prasun Chakrabarti ◽  
Michal Jasinski ◽  
...  
Keyword(s):  
Deep Learning ◽  
Short Term Memory ◽  
Support Vector ◽  
Variational Autoencoder ◽  
Different Types ◽  
Static Images ◽  
Long Short Term Memory ◽  
2D And 3D ◽  
Better Than

This article experiments with deep learning methodologies in echocardiogram (echo), a promising and vigorously researched technique in the preponderance field. This paper involves two different kinds of classification in the echo. Firstly, classification into normal (absence of abnormalities) or abnormal (presence of abnormalities) has been done, using 2D echo images, 3D Doppler images, and videographic images. Secondly, based on different types of regurgitation, namely, Mitral Regurgitation (MR), Aortic Regurgitation (AR), Tricuspid Regurgitation (TR), and a combination of the three types of regurgitation are classified using videographic echo images. Two deep-learning methodologies are used for these purposes, a Recurrent Neural Network (RNN) based methodology (Long Short Term Memory (LSTM)) and an Autoencoder based methodology (Variational AutoEncoder (VAE)). The use of videographic images distinguished this work from the existing work using SVM (Support Vector Machine) and also application of deep-learning methodologies is the first of many in this particular field. It was found that deep-learning methodologies perform better than SVM methodology in normal or abnormal classification. Overall, VAE performs better in 2D and 3D Doppler images (static images) while LSTM performs better in the case of videographic images.

scholarly journals Classification of SSVEP-based BCIs using Genetic Algorithm

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Hamideh Soltani ◽  
Zahra Einalou ◽  
Mehrdad Dadgostar ◽  
Keivan Maghooli
Keyword(s):  
Genetic Algorithm ◽  
Dimension Reduction ◽  
Classification Accuracy ◽  
Bayesian Method ◽  
Computer Interface ◽  
Support Vector ◽  
Svm Classifier ◽  
Effective Dimension ◽  
Effective Dimension Reduction

AbstractBrain computer interface (BCI) systems have been regarded as a new way of communication for humans. In this research, common methods such as wavelet transform are applied in order to extract features. However, genetic algorithm (GA), as an evolutionary method, is used to select features. Finally, classification was done using the two approaches support vector machine (SVM) and Bayesian method. Five features were selected and the accuracy of Bayesian classification was measured to be 80% with dimension reduction. Ultimately, the classification accuracy reached 90.4% using SVM classifier. The results of the study indicate a better feature selection and the effective dimension reduction of these features, as well as a higher percentage of classification accuracy in comparison with other studies.

Deep Learning based Tomato’s Ripe and Unripe Classification System

2022 ◽  
Vol 10 (1) ◽  
pp. 0-0
Keyword(s):  
Deep Learning ◽  
Classification Accuracy ◽  
Ccd Camera ◽  
Agricultural Products ◽  
Training Data ◽  
Maturity Level ◽  
Agriculture Sector ◽  
The Past ◽  
State Of Art

Effective productivity estimates of fresh produced crops are very essential for efficient farming, commercial planning, and logistical support. In the past ten years, machine learning (ML) algorithms have been widely used for grading and classification of agricultural products in agriculture sector. However, the precise and accurate assessment of the maturity level of tomatoes using ML algorithms is still a quite challenging to achieve due to these algorithms being reliant on hand crafted features. Hence, in this paper we propose a deep learning based tomato maturity grading system that helps to increase the accuracy and adaptability of maturity grading tasks with less amount of training data. The performance of proposed system is assessed on the real tomato datasets collected from the open fields using Nikon D3500 CCD camera. The proposed approach achieved an average maturity classification accuracy of 99.8 % which seems to be quite promising in comparison to the other state of art methods.

Detection and Classification of Brain Tumors from MRI Images Using a Deep Convolutional Neural Network Approach

2022 ◽  
Vol 10 (1) ◽  
pp. 0-0
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Brain Tumor ◽  
Convolutional Neural Network ◽  
Binary Classification ◽  
Deep Convolutional Neural Network ◽  
Neural Network Models ◽  
Neural Network Approach ◽  
Cancer Disease

Brain tumor is a severe cancer disease caused by uncontrollable and abnormal partitioning of cells. Timely disease detection and treatment plans lead to the increased life expectancy of patients. Automated detection and classification of brain tumor are a more challenging process which is based on the clinician’s knowledge and experience. For this fact, one of the most practical and important techniques is to use deep learning. Recent progress in the fields of deep learning has helped the clinician’s in medical imaging for medical diagnosis of brain tumor. In this paper, we present a comparison of Deep Convolutional Neural Network models for automatically binary classification query MRI images dataset with the goal of taking precision tools to health professionals based on fined recent versions of DenseNet, Xception, NASNet-A, and VGGNet. The experiments were conducted using an MRI open dataset of 3,762 images. Other performance measures used in the study are the area under precision, recall, and specificity.

Analysing Temporal Effects on Classification of SAR and Optical Images

2021 ◽  
Author(s):  
Ahmet Batuhan Polat ◽  
Ozgun Akcay ◽  
Fusun Balik Sanli
Keyword(s):  
Rural Areas ◽  
Classification Accuracy ◽  
Winter Season ◽  
Support Vector ◽  
Classification Algorithms ◽  
Sar Images ◽  
Optical Images ◽  
Object Based ◽  
Training Samples

<p>Obtaining high accuracy in land cover classification is a non-trivial problem in geosciences for monitoring urban and rural areas. In this study, different classification algorithms were tested with different types of data, and besides the effects of seasonal changes on these classification algorithms and the evaluation of the data used are investigated. In addition, the effect of increasing classification training samples on classification accuracy has been revealed as a result of the study. Sentinel-1 Synthetic Aperture Radar (SAR) images and Sentinel-2 multispectral optical images were used as datasets. Object-based approach was used for the classification of various fused image combinations. The classification algorithms Support Vector Machines (SVM), Random Forest (RF) and K-Nearest Neighborhood (kNN) methods were used for this process. In addition, Normalized Difference Vegetation Index (NDVI) was examined separately to define the exact contribution to the classification accuracy.  As a result, the overall accuracies were compared by classifying the fused data generated by combining optical and SAR images. It has been determined that the increase in the number of training samples improve the classification accuracy. Moreover, it was determined that the object-based classification obtained from single SAR imagery produced the lowest classification accuracy among the used different dataset combinations in this study. In addition, it has been shown that NDVI data does not increase the accuracy of the classification in the winter season as the trees shed their leaves due to climate conditions.</p>

scholarly journals Multi-Classification of Fetal Health Status Using Extreme Learning Machine

2021 ◽  
Vol 5 (2) ◽  
pp. 62-70
Author(s):  
Ömer KASIM
Keyword(s):  
Extreme Learning Machine ◽  
Classification Accuracy ◽  
Binary Classification ◽  
Clinical Decision ◽  
Support Vector ◽  
Data Set ◽  
Multiple Classification ◽  
Learning Machine ◽  
Multi Class Classification ◽  
The University

Cardiotocography (CTG) is used for monitoring the fetal heart rate signals during pregnancy. Evaluation of these signals by specialists provides information about fetal status. When a clinical decision support system is introduced with a system that can automatically classify these signals, it is more sensitive for experts to examine CTG data. In this study, CTG data were analysed with the Extreme Learning Machine (ELM) algorithm and these data were classified as normal, suspicious and pathological as well as benign and malicious. The proposed method is validated with the University of California International CTG data set. The performance of the proposed method is evaluated with accuracy, f1 score, Cohen kappa, precision, and recall metrics. As a result of the experiments, binary classification accuracy was obtained as 99.29%. There was only 1 false positive.  When multi-class classification was performed, the accuracy was obtained as 98.12%.  The amount of false positives was found as 2. The processing time of the training and testing of the ELM algorithm were quite minimized in terms of data processing compared to the support vector machine and multi-layer perceptron. This result proved that a high classification accuracy was obtained by analysing the CTG data both binary and multiple classification.

scholarly journals Classification of Brain Tumor IDH Status using MRI and Deep Learning

2019 ◽  
Author(s):  
Sahil Nalawade ◽  
Gowtham Murugesan ◽  
Maryam Vejdani-Jahromi ◽  
Ryan A. Fisicaro ◽  
Chandan Ganesh Bangalore Yogananda ◽  
...  
Keyword(s):  
Deep Learning ◽  
Classification Accuracy ◽  
Test Accuracy ◽  
Low Grade ◽  
Idh Mutation ◽  
Validation Data ◽  
Mutation Status ◽  
Radiologic Imaging ◽  
Address Data

AbstractIsocitrate dehydrogenase (IDH) mutation status is an important marker in glioma diagnosis and therapy. We propose a novel automated pipeline for predicting IDH status noninvasively using deep learning and T2-weighted (T2w) MR images with minimal preprocessing (N4 bias correction and normalization to zero mean and unit variance). T2w MRI and genomic data were obtained from The Cancer Imaging Archive dataset (TCIA) for 260 subjects (120 High grade and 140 Low grade gliomas). A fully automated 2D densely connected model was trained to classify IDH mutation status on 208 subjects and tested on another held-out set of 52 subjects, using 5-fold cross validation. Data leakage was avoided by ensuring subject separation during the slice-wise randomization. Mean classification accuracy of 90.5% was achieved for each axial slice in predicting the three classes of no tumor, IDH mutated and IDH wild-type. Test accuracy of 83.8% was achieved in predicting IDH mutation status for individual subjects on the test dataset of 52 subjects. We demonstrate a deep learning method to predict IDH mutation status using T2w MRI alone. Radiologic imaging studies using deep learning methods must address data leakage (subject duplication) in the randomization process to avoid upward bias in the reported classification accuracy.

Feature Extraction and Classification of Images Based on Corner Invariant Moments

2013 ◽  
Vol 475-476 ◽  
pp. 374-378
Author(s):  
Xue Ming Zhai ◽  
Dong Ya Zhang ◽  
Yu Jia Zhai ◽  
Ruo Chen Li ◽  
De Wen Wang
Keyword(s):  
Feature Extraction ◽  
Classification Accuracy ◽  
Image Feature ◽  
Support Vector ◽  
System Management ◽  
Image Feature Extraction ◽  
Invariant Moments ◽  
Harris Corner ◽  
Classification Of Images

Image feature extraction and classification is increasingly important in all sectors of the images system management. Aiming at the problems that applying Hu invariant moments to extract image feature computes large and too dimensions, this paper presented Harris corner invariant moments algorithm. This algorithm only calculates corner coordinates, so can reduce the corner matching dimensions. Combined with the SVM (Support Vector Machine) classification method, we conducted a classification for a large number of images, and the result shows that using this algorithm to extract invariant moments and classifying can achieve better classification accuracy.

Classification of Rusty and Non-Rusty Images

2020 ◽  
Vol 9 (4) ◽  
pp. 1-17
Author(s):  
Mridu Sahu ◽  
Tushar Jani ◽  
Maski Saijahnavi ◽  
Amrit Kumar ◽  
Upendra Chaurasiya ◽  
...  
Keyword(s):  
Support Vector Machine ◽  
Classification Accuracy ◽  
Data Augmentation ◽  
Support Vector ◽  
Suitable Model ◽  
Online Databases ◽  
Perlin Noise ◽  
Combined Features ◽  
Different Parts

Rust detection is necessary for proper working and maintenance of machines for security purposes. Images are one of the suggested platforms for rust detection in which rust can be detected even though the human can't reach to the area. However, there are a lack of online databases available that can provide a sizable dataset to identify the most suitable model that can be used further. This paper provides a data augmentation technique by using Perlin noise, and further, the generated images are tested on standard features (i.e., statistical values, entropy, along with SIFT and SURF methods). The two most generalized classifiers, naïve Bayes and support vector machine, are identified and tested to obtain the performance of classification of rusty and non-rusty images. The support vector machine provides better classification accuracy, which also suggests that that the combined features of statistics, SIFT, and SURF are able to differentiate the images. Hence, it can be further used to detect the rust in different parts of machines.

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