scholarly journals Novel Aspects of Nitrate Regulation in Arabidopsis

2020 ◽  
Vol 11 ◽  
Author(s):  
Hongmei Fan ◽  
Shuxuan Quan ◽  
Shengdong Qi ◽  
Na Xu ◽  
Yong Wang
Keyword(s):  
Transcriptional Regulation ◽  
Regulatory Network ◽  
Growth And Development ◽  
Significant Progress ◽  
Plant Growth And Development ◽  
General Picture ◽  
The Past ◽  
Non Coding Rna ◽  
Post Transcriptional Regulation ◽  
Made In

Nitrogen (N) is one of the most essential macronutrients for plant growth and development. Nitrate (NO3–), the major form of N that plants uptake from the soil, acts as an important signaling molecule in addition to its nutritional function. Over the past decade, significant progress has been made in identifying new components involved in NO3– regulation and starting to unravel the NO3– regulatory network. Great reviews have been made recently by scientists on the key regulators in NO3– signaling, NO3– effects on plant development, and its crosstalk with phosphorus (P), potassium (K), hormones, and calcium signaling. However, several novel aspects of NO3– regulation have not been previously reviewed in detail. Here, we mainly focused on the recent advances of post-transcriptional regulation and non-coding RNA (ncRNAs) in NO3– signaling, and NO3– regulation on leaf senescence and the circadian clock. It will help us to extend the general picture of NO3– regulation and provide a basis for further exploration of NO3– regulatory network.

scholarly journals Cytokinin N-glucosides: Occurrence, Metabolism and Biological Activities in Plants

Biomolecules ◽  
2020 ◽  
Vol 11 (1) ◽  
pp. 24
Author(s):  
Eva Pokorná ◽  
Tomáš Hluska ◽  
Petr Galuszka ◽  
H. Tucker Hallmark ◽  
Petre I. Dobrev ◽  
...  
Keyword(s):  
Metabolic Pathways ◽  
Growth And Development ◽  
Biological Activities ◽  
Physiological Effects ◽  
Inhibitory Effects ◽  
Plant Growth And Development ◽  
The Past ◽  
Complex Process ◽  
Considerable Impact ◽  
Physiological Impact

Cytokinins (CKs) are a class of phytohormones affecting many aspects of plant growth and development. In the complex process of CK homeostasis in plants, N-glucosylation represents one of the essential metabolic pathways. Its products, CK N7- and N9-glucosides, have been largely overlooked in the past as irreversible and inactive CK products lacking any relevant physiological impact. In this work, we report a widespread distribution of CK N-glucosides across the plant kingdom proceeding from evolutionary older to younger plants with different proportions between N7- and N9-glucosides in the total CK pool. We show dramatic changes in their profiles as well as in expression levels of the UGT76C1 and UGT76C2 genes during Arabidopsis ontogenesis. We also demonstrate specific physiological effects of CK N-glucosides in CK bioassays including their antisenescent activities, inhibitory effects on root development, and activation of the CK signaling pathway visualized by the CK-responsive YFP reporter line, TCSv2::3XVENUS. Last but not least, we present the considerable impact of CK N7- and N9-glucosides on the expression of CK-related genes in maize and their stimulatory effects on CK oxidase/dehydrogenase activity in oats. Our findings revise the apparent irreversibility and inactivity of CK N7- and N9-glucosides and indicate their involvement in CK evolution while suggesting their unique function(s) in plants.

The kinase module of the Mediator complex: an important signalling processor for the development and survival of plants

2020 ◽  
Author(s):  
Rekha Agrawal ◽  
Fajkus Jiří ◽  
Jitendra K Thakur
Keyword(s):  
Plant Growth ◽  
Rna Polymerase Ii ◽  
Growth And Development ◽  
Regulation Of Gene Expression ◽  
Plant Growth And Development ◽  
Biochemical Processes ◽  
The Core ◽  
The Past ◽  
And Function ◽  
Core Part

Abstract Mediator, a multisubunit protein complex, is a signal processor that conveys regulatory information from transcription factors to RNA polymerase II and therefore plays an important role in the regulation of gene expression. This megadalton complex comprises four modules, namely, the head, middle, tail, and kinase modules. The first three modules form the core part of the complex, whereas association of the kinase module is facultative. The kinase module is able to alter the function of Mediator and has been established as a major transcriptional regulator of numerous developmental and biochemical processes. The kinase module consists of MED12, MED13, CycC, and kinase CDK8. Upon association with Mediator, the kinase module can alter its structure and function dramatically. In the past decade, research has established that the kinase module is very important for plant growth and development, and in the fight against biotic and abiotic challenges. However, there has been no comprehensive review discussing these findings in detail and depth. In this review, we survey the regulation of kinase module subunits and highlight their many functions in plants. Coordination between the subunits to process different signals for optimum plant growth and development is also discussed.

Supercarboranes: Achievements and perspectives

2012 ◽  
Vol 85 (4) ◽  
pp. 661-670 ◽  
Author(s):  
Jian Zhang ◽  
Zuowei Xie
Keyword(s):  
Reducing Agents ◽  
Future Perspectives ◽  
Significant Progress ◽  
Boron Clusters ◽  
The Past ◽  
The Future ◽  
Made In ◽  
Carborane Anions

This article highlights the achievements in the chemistry of supercarboranes (carboranes with more than 12 vertices) in the past decade and the future perspectives. The chemistry of boron clusters has been dominated by 12-vertex carboranes for several decades. Only in recent years has significant progress been made in the chemistry of supercarboranes. Such a breakthrough relies on the use of CAd (carbon-atoms-adjacent) 12-vertex nido-carborane anions as starting materials. A series of 13- and 14-vertex carboranes as well as their corresponding 14- and 15-vertex metallacarboranes have been prepared and structurally characterized. Reactions of supercarboranes with reducing agents, electrophiles, and nucleophiles are studied, which reveal a more diverse and richer reaction chemistry than their icosahedral cousins.

scholarly journals Emergent processes in cognitive-emotional interactions

2010 ◽  
Vol 12 (4) ◽  
pp. 433-448 ◽  
Keyword(s):  
Basal Forebrain ◽  
Significant Progress ◽  
Brain Organization ◽  
The Past ◽  
Mind And Brain ◽  
The Mind ◽  
The Brain ◽  
Anatomical Evidence ◽  
Made In

Emotion and cognition have been viewed as largely separate entities in the brain. Within this framework, significant progress has been made in understanding specific aspects of behavior. Research in the past two decades, however, has started to paint a different picture of brain organization, one in which network interactions are key to understanding complex behaviors. From both basic and clinical perspectives, the characterization of cognitive-emotional interactions constitutes a fundamental issue in the investigation of the mind and brain. This review will highlight the interactive and integrative potential that exists in the brain to bring together the cognitive and emotional domains. First, anatomical evidence will be provided, focusing on structures such as hypothalamus, basal forebrain, amygdala, cingulate cortex, orbitofrontal cortex, and insula. Data on functional interactions will then be discussed, followed by a discussion of a dual competition framework, which describes cognitive-emotional interactions in terms of perceptual and cognitive competition mechanisms.

scholarly journals Osteoarthritis, osteoarthrosis and osteoarthropathy: What is the difference?

2021 ◽  
Vol 2 (1) ◽  
pp. 25-32
Author(s):  
Danilo Jeremić ◽  
Boris Gluščević ◽  
Stanislav Rajković ◽  
Želimir Jovanović ◽  
Branislav Krivokapić
Keyword(s):  
Rheumatoid Arthritis ◽  
Clinical Presentation ◽  
Joint Disease ◽  
Joint Diseases ◽  
Significant Progress ◽  
Inflammatory Joint Diseases ◽  
The Past ◽  
Inflammatory Arthropathy ◽  
The Difference ◽  
Made In

Osteoarthritis, osteoarthrosis, and osteoarthropathy are diseases that doctors encounter daily in their practice. The use of all three terms is customary, often without a clear justification as to why a particular term is used for a particular case. In the past several decades, doctors mainly differentiated among these diseases based on clinical presentation and radiography. In the past several years, however, significant progress has been made in the field of biochemical, immunological, and cytohistological research, which has provided explanations for the pathogenesis of these conditions, enabled defining differences amongst them and facilitated the use of appropriate terms for each one of these diseases. The term arthritis (osteoarthritis) should be used exclusively for primarily inflammatory joint diseases-rheumatoid arthritis, juvenile arthritis, reactive arthritis (Reiter's syndrome). If the etiology is infectious, this must also be emphasized-septic (purulent) arthritis, tuberculous arthritis. Arthrosis (osteoarthrosis) relates to changes in the joints occurring due to pathological processes within the joint itself, but which, in their basis, are not inflammatory. Arthropathy is a term for joint disease stemming from another diseased organ or system of organs.

scholarly journals MicroRNAs : An Emerging Player In Autophagy

2014 ◽  
Author(s):  
yongfei yang ◽  
CHENGYU LIANG
Keyword(s):  
Regulatory Network ◽  
Molecular Mechanisms ◽  
Regulation Of Gene Expression ◽  
Substantial Effect ◽  
Digestion Process ◽  
The Past ◽  
Pathological Conditions ◽  
Cellular Autophagy ◽  
Evolutionarily Conserved ◽  
Post Transcriptional Regulation

Autophagy is an evolutionarily conserved self-digestion process for the quality control of intracellular entities in eukaryotes. In the past few years, mounting evidence indicates that microRNAs (miRNAs)-mediated post-transcriptional regulation of gene expression represents an integral part of the autophagy regulatory network and may have a substantial effect on autophagy-related physiological and pathological conditions including cancer. Herein, we examine some of the molecular mechanisms by which microRNAs manipulate the autophagic machinery to maintain cellular homeostasis and their biological outputs during cancer development. A better understanding of interaction between microRNAs and cellular autophagy may ultimately benefit future cancer diagnostic and anticancer therapeutics.

Detecting Co-Regulatory Modules from Human Regulatory Network by Randomly Walking Between Regulator and Gene Modules

2017 ◽  
Vol 14 (1) ◽  
pp. 384-388
Author(s):  
Jiawei Luo ◽  
Dan Song ◽  
Cheng Liang ◽  
Guanghui Li ◽  
Buwen Cao
Keyword(s):  
Transcriptional Regulation ◽  
Regulatory Network ◽  
Gene Interaction ◽  
Heterogeneous Data ◽  
Transcriptional Factors ◽  
Coordinate Regulation ◽  
Regulatory Modules ◽  
Gene Modules ◽  
Living Organisms ◽  
Post Transcriptional Regulation

Gene expression is jointly regulated by microRNAs and transcriptional factors. As such, constructing a regulatory network for microRNAs and transcriptional factors and analyzing their combinatorial effects are vital to understand living organisms. Co-regulatory modules, including functional homogeneous microRNAs, transcriptional factors, and genes, provide insights into coordinate regulation. In this paper, we propose a random walk with restart between regulator and gene modules (RWRRGM) method to detect co-regulatory modules from a human regulatory network. The network integrates large, heterogeneous data, including transcriptional regulation, post-transcriptional regulation, and gene-gene interaction. RWRRGM first identifies regulator and gene modules by greedily expanding seed nodes and then walks on the identified modules randomly. Finally, functional homogeneous regulator and gene modules are integrated to form co-regulatory modules. RWRRGM-based modules exhibit higher enrichment in gene ontology terms and known pathways than modules predicted by other methods.

New developments in the theory and interpretation of X-ray spectra based on fast parallel calculations

2002 ◽  
Vol 10 (1) ◽  
pp. 43-45 ◽  
Author(s):  
J. J. Rehr ◽  
A. L. Ankudinov
Keyword(s):  
Ab Initio ◽  
Structural Biology ◽  
Significant Progress ◽  
Edge Structure ◽  
New Developments ◽  
X Ray ◽  
The Past ◽  
Current State ◽  
X Ray Absorption ◽  
Made In

There has been dramatic progress over the past decade both in theory and inab initiocalculations of X-ray absorption fine structure. Significant progress has also been made in understanding X-ray absorption near-edge structure (XANES). This contribution briefly reviews the developments in this field leading up to the current state. One of the key advances has been the development of severalab initiocodes such asFEFF, which permit an interpretation of the spectra in terms of geometrical and electronic properties of a material. Despite this progress, XANES calculations have remained challenging both to compute and to interpret. However, recent advances based on parallel Lanczos multiple-scattering algorithms have led to speed increases of typically two orders of magnitude, making fast calculations practicable. Improvements in the interpretation of near-edge structure have also been made. It is suggested that these developments can be advantageous in structural biology,e.g.in post-genomics studies of metalloproteins.

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