scholarly journals Comparative Transcriptome Analysis Revealed Candidate Genes Potentially Related to Desiccation Sensitivity of Recalcitrant Quercus variabilis Seeds

2021 ◽  
Vol 12 ◽  
Author(s):  
Dongxing Li ◽  
Yingchao Li ◽  
Jialian Qian ◽  
Xiaojuan Liu ◽  
Huihui Xu ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Enrichment Analysis ◽  
Seed Storage ◽  
Germination Percentage ◽  
Molecular Regulation ◽  
Regulation Mechanism ◽  
Quercus Variabilis ◽  
Desiccation Sensitivity ◽  
Comparison Groups

Chinese cork oak (Quercus variabilis) is a widely distributed and highly valuable deciduous broadleaf tree from both ecological and economic perspectives. Seeds of this species are recalcitrant, i.e., sensitive to desiccation, which affects their storage and long-term preservation of germplasm. However, little is known about the underlying molecular mechanism of desiccation sensitivity of Q. variabilis seeds. In this study, the seeds were desiccated with silica gel for certain days as different treatments from 0 (Control) to 15 days (T15) with a gradient of 1 day. According to the seed germination percentage, four key stages (Control, T2, T4, and T11) were found. Then the transcriptomic profiles of these four stages were compared. A total of 4,405, 4,441, and 5,907 differentially expressed genes (DEGs) were identified in T2 vs. Control, T4 vs. Control, and T11 vs. Control, respectively. Among them, 2,219 DEGs were overlapped in the three comparison groups. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that these DEGs were enriched into 124 pathways, such as “Plant hormone signal transduction” and “Glycerophospholipid metabolism”. DEGs related to hormone biosynthesis and signal transduction (ZEP, YUC, PYR, ABI5, ERF1B, etc.), stress response proteins (LEA D-29, HSP70, etc.), and phospholipase D (PLD1) were detected during desiccation. These genes and their interactions may determine the desiccation sensitivity of seeds. In addition, group specific DEGs were also identified in T2 vs. Control (PP2C62, UNE12, etc.), T4 vs. Control (WRKY1-like, WAK10, etc.), and T11 vs. Control (IBH1, bZIP44, etc.), respectively. Finally, a possible work model was proposed to show the molecular regulation mechanism of desiccation sensitivity in Q. variabilis seeds. This is the first report on the molecular regulation mechanism of desiccation sensitivity of Q. variabilis seeds using RNA-Seq. The findings could make a great contribution to seed storage and long-term conservation of recalcitrant seeds in the future.

scholarly journals Comparative Transcriptome Analysis Revealed Candidate Genes Potentially Related to Desiccation Sensitivity of Recalcitrant Quercus variabilis Seeds

2020 ◽  
Author(s):  
Dongxing Li ◽  
Yingchao Li ◽  
Jialian Qian ◽  
Xiaojuan Liu ◽  
Huihui Xu ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Enrichment Analysis ◽  
Underlying Mechanism ◽  
Molecular Regulation ◽  
Regulation Mechanism ◽  
Hormone Synthesis ◽  
Quercus Variabilis ◽  
Desiccation Sensitivity ◽  
Work Model

Abstract Background: Chinese cork oak (Quercus variabilis) is a widely distributed and highly valuable deciduous broadleaf tree from both ecological and economic perspectives. Seeds of Q. variabilis are recalcitrant, i.e., sensitive to desiccation, which affects their storage and long-term preservation of germplasm. However, little is known about the underlying mechanism of desiccation sensitivity of Q. variabilis seeds. Results: In this study, the seeds were desiccated with silica gel for 0 day (control, CK), one day (T1) to 15 days (T15). After desiccation, the transcriptomic profiles of these different desiccation stages were compared using the Quercus suber genome as a reference, as well four key stages (CK, T2, T4 and T11) of desiccation sensitivity of Q. variabilis seeds through germination test were identified. A total of 4405, 4441, and 5907 differentially expressed genes (DEGs) were identified in T2 vs CK, T4 vs CK, and T11 vs CK, respectively. Among them, 2219 DEGs were overlapped in the three comparison groups. KEGG (Kyoto Encyclopaedia of Genes and Genomes) enrichment analysis showed that these DEGs were enriched into 124 pathways, such as "plant hormone signal transduction" and "glycerophospholipid metabolism". DEGs related to hormone synthesis and signal transduction (ZEP, YUC, PYR, ABI5, ERF1B, etc), stress response proteins (LEA D-29, HSP70, etc), and phospholipase D (PLD1) were detected during seed desiccation. These genes and their interactions may regulate the desiccation sensitivity of Q. variabilis seeds. Finally, a possible work model was proposed to show the molecular regulation mechanism of desiccation sensitivity in recalcitrant Q. variabilis seedsConclusions: Our study is the first on the molecular regulation mechanism of desiccation sensitivity of Q. variabilis seeds by using RNA-Seq and propose a possible work model. Our findings could make a great contribute to seed storage and long-term conservation of germplasm resources of recalcitrant seeds in the future.

scholarly journals Mid storage seed hardening: a mechanical method to maintain seed viability during long term jute seed preservation

2021 ◽  
Vol 8 (1) ◽  
pp. 79-88
Author(s):  
Md. Nasir Uddin ◽  
S. M. Mahbub Ali ◽  
Md. Abu Sadat ◽  
Md Amazed Hossain Chowdhury ◽  
Israt Jahan Mumu ◽  
...  
Keyword(s):  
Crop Production ◽  
Agricultural Sector ◽  
Seed Viability ◽  
Early Period ◽  
Chemical Properties ◽  
Seed Storage ◽  
Germination Percentage ◽  
Oil Degradation ◽  
Hardening Treatment

Seed plays an important role in agricultural sector for both production and consumption purpose. Availability of vigour seed is one of the major constraints for maximizing crop production. However, healthy seed can also lose its viability during seed storage by changing different physio-chemical properties. Influence of environmental factors and seed containers during storage leading to seed deterioration. In this research, mid storage seed hardening treatment was applied in different aged seeds of jute species (C. Capsularis & C. olitorius) with two types of storage bags. Seed hardening treatment showed the less moisture content with better germination percentage compared to the untreated species of jute seeds. Seed packing in polythene bags during both short and long term seed storages had higher viable seeds compared to the cloth packing seeds. The effect of seed hardening treatment on seed oil content and pattern of oil degradation is distinct in early period of storage. The faster rate of oil degradation, soluble protein and free amino acids was found in seeds of un-treated stored seeds in cloth bag. Contrary, very slow rate of oil degradation was observed in harden seed and stored in polythene bag which indicated better storability of harden seeds.

scholarly journals Assessing the storage potential of Australian rainforest seeds: a decision-making key to aid rapid conservation

2021 ◽  
Author(s):  
K. D. Sommerville ◽  
G. Errington ◽  
Z-J. Newby ◽  
G. S. Liyanage ◽  
C. A. Offord
Keyword(s):  
Decision Making ◽  
Logistic Regression ◽  
Dry Weight ◽  
Germination Percentage ◽  
Fleshy Fruit ◽  
Seed Moisture Content ◽  
Fresh Seed ◽  
Desiccation Sensitivity ◽  
Seed Moisture ◽  
Seed Characteristics

AbstractSeed banking of rainforest species is hindered by lack of knowledge as to which species are tolerant of desiccation and freezing. We assessed 313 Australian rainforest species for seed banking suitability by comparing the germination percentage of fresh seeds to seeds dried at 15% RH and seeds stored at −20 °C after drying. We then compared desiccation responses to environmental, habit, fruit and seed characteristics to identify the most useful predictors of desiccation sensitivity. Of 162 species with ≥ 50% initial germination, 22% were sensitive to desiccation, 64% were tolerant and 10% were partially tolerant; the responses of 4% were uncertain. Of 107 desiccation tolerant species tested for response to freezing, 24% were freezing sensitive or short-lived in storage at −20 °C. Median values for fresh seed moisture content (SMC), oven dry weight (DW) and the likelihood of desiccation sensitivity (PD-S) were significantly greater for desiccation sensitive than desiccation tolerant seeds. Ninety-four to 97% of seeds with SMC < 29%, DW < 20 mg or PD-S < 0.01 were desiccation tolerant. Ordinal logistic regression of desiccation response against environmental, habit, fruit and seed characteristics indicated that the likelihood of desiccation sensitivity was significantly increased by a tree habit, fleshy fruit, increasing fresh SMC and increasing PD-S. The responses observed in this study were combined with earlier studies to develop a simple decision key to aid prediction of desiccation responses in untested rainforest species.

scholarly journals Me & My Wishes Videos: Congruence of End-of-Life Preferences Between Residents With Dementia, Family, and Staff

2020 ◽  
Vol 4 (Supplement_1) ◽  
pp. 786-786
Author(s):  
Sarah Neller ◽  
Gail Towsley ◽  
Bob Wong
Keyword(s):  
End Of Life ◽  
Life Support ◽  
Medical Intervention ◽  
Treatment Preferences ◽  
Term Care ◽  
Comparison Groups ◽  
Preferences For Care ◽  
Baseline Health ◽  
Support Family

Abstract Me & My Wishes are person-centered videos of long term care residents (ages 65-95) living with dementia discussing their preferences for care including end-of-life (EOL) medical intervention. We evaluated the congruence of six EOL treatment preferences between the residents’ personal videos, medical records (e.g. advance directive), and surveys of family (n= 49) and staff (n=37; 118 responses) knowledge of their preferences. Results were highly discordant. Treatments with the most discordance when comparing videos to comparison groups were IV fluids (medical record, 57.1%) and life support (family, 69.4%; staff, 82.2%). Residents reported EOL treatments were considered acceptable if they were temporary, would relieve suffering, or enabled a return to baseline health. These caveats may lead to discordance if they are not conveyed to family or staff. Our findings highlight the need for conversations among residents living with dementia and their caregivers to improve understanding, congruence and adherence of resident EOL preferences.

scholarly journals Slc7a11 Modulated by POU2F1 is Involved in Pigmentation in Rabbit

2019 ◽  
Vol 20 (10) ◽  
pp. 2493 ◽  
Author(s):  
Yang Chen ◽  
Shuaishuai Hu ◽  
Lin Mu ◽  
Bohao Zhao ◽  
Manman Wang ◽  
...  
Keyword(s):  
Skin Color ◽  
Site Directed Mutagenesis ◽  
Molecular Regulation ◽  
Luciferase Reporter ◽  
Directed Mutagenesis ◽  
Regulation Mechanism ◽  
Solute Carrier Family ◽  
Depth Analysis ◽  
Solute Carrier ◽  
Fur Color

Solute carrier family 7 member 11 (Slc7a11) is a cystine/glutamate xCT transporter that controls the production of pheomelanin pigment to change fur and skin color in animals. Previous studies have found that skin expression levels of Slc7a11 varied significantly with fur color in Rex rabbits. However, the molecular regulation mechanism of Slc7a11 in pigmentation is unknown. Here, rabbit melanocytes were first isolated and identified. The distribution and expression pattern of Slc7a11 was confirmed in skin from rabbits with different fur colors. Slc7a11 affected the expression of pigmentation related genes and thus affected melanogenesis. Meanwhile, Slc7a11 decreased melanocyte apoptosis, but inhibition of Slc7a11 enhanced apoptosis. Furthermore, the POU2F1 protein was found to bind to the −713 to −703 bp region of Slc7a11 promoter to inhibit its activity in a dual-luciferase reporter and site-directed mutagenesis assay. This study reveals the function of the Slc7a11 in melanogenesis and provides in-depth analysis of the mechanism of fur pigmentation.

T cell long-term hyporesponsiveness follows antigen receptor engagement and results from defective signal transduction

1994 ◽  
Vol 24 (2) ◽  
pp. 348-354 ◽  
Author(s):  
Patrice M. Dubois ◽  
Fabienne Andris ◽  
Jacques Urbain ◽  
Oberdan Leo ◽  
Marcelle Kaufman ◽  
...  
Keyword(s):  
Signal Transduction ◽  
T Cell ◽  
Antigen Receptor

scholarly journals The National Tree Seed Centre Celebrates 40 Years

2007 ◽  
Vol 83 (5) ◽  
pp. 719-722
Author(s):  
J D Simpson ◽  
B S.P. Wang
Keyword(s):  
Seed Storage ◽  
Ex Situ ◽  
Future Research ◽  
Gene Conservation ◽  
Forest Land ◽  
Seed Physiology ◽  
Technology Research Group ◽  
Insect Attack ◽  
Tree Seed

The National Tree Seed Centre has been providing seed of known origin and quality for research for 40 years. Seed is also stored for long-term gene conservation purposes to provide a source of germplasm for future research and restoration. This is particularly important for species facing such threats as insect attack, disease, climate change, or conversion of forest land to non-forest uses. The Centre's inventory focuses on native tree and shrub species, striving to store samples from throughout their ranges. Over 26 000 seed samples have been sent to researchers in 65 countries, 70% of these samples being distributed within Canada. Seed research has always been a component of the Seed Centre's program. One notable accomplishment is the development of the Petawawa Germination Box. The Seed Centre participates in and contributes to activities of the Association of Official Seed Analysts, the International Seed Testing Association, and the IUFRO Seed Physiology and Technology Research Group. Key words: collection, dormancy, ex situ gene conservation, germination, research, seed, storage

scholarly journals Relationship between mitochondrial changes and seed aging as a limitation of viability for the storage of beech seed (Fagus sylvatica L.)

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e10569
Author(s):  
Arleta Małecka ◽  
Liliana Ciszewska ◽  
Aleksandra Staszak ◽  
Ewelina Ratajczak
Keyword(s):  
Fagus Sylvatica ◽  
Molecular Mechanisms ◽  
Membrane Integrity ◽  
Natural Aging ◽  
Seed Storage ◽  
Biological Processes ◽  
Embryonic Axes ◽  
Seed Aging ◽  
Fagus Sylvatica L

Aging is one of the most fundamental biological processes occurring in all forms of eukaryotic life. Beech trees (Fagus sylvatica L.) produce seeds in intervals of 5–10 years. Its yearly seed yield is usually very low, so there is a need for long-term seed storage to enable propagation of this species upon demand. Seeds for sowing must be of high quality but they are not easy to store without viability loss. Understanding the mechanism responsible for seed aging is therefore very important. We observed the generation of reactive oxygen species (ROS) in mitochondria of embryonic axes and cotyledons of beech seeds during natural aging. The presence of ROS led to changes in compromised mitochondrial membrane integrity and in mitochondrial metabolism and morphology. In this study, we pointed to the involvement of mitochondria in the natural aging process of beech seeds, but the molecular mechanisms underlying this involvement are still unknown.

scholarly journals Effects of Long-Term Hydrogen Intervention on Plasma Metabolites and Gut Microbiome of Rats in Health Status

2021 ◽  
Author(s):  
Fei Xie ◽  
Xue Jiang ◽  
Yang Yi ◽  
Zi-Jia Liu ◽  
Chen Ma ◽  
...  
Keyword(s):  
Health Status ◽  
Gut Microbiota ◽  
Biological Effects ◽  
Enrichment Analysis ◽  
The Body ◽  
Plasma Metabolites ◽  
Control Group ◽  
Pathway Enrichment Analysis ◽  
Rrna Gene

Abstract The potential for preventive and therapeutic applications of H2 have now been confirmed in various disease. However, the effects of H2 on health status have not been fully elucidated. Our previous study reported changes in the body weight and 13 serum biochemical parameters during the six-month hydrogen intervention. To obtain a more comprehensive understanding of the effects of long-term hydrogen consumption, the plasma metabolome and gut microbiota were investigated in this study. Compared with the control group, 14 and 10 differential metabolites (DMs) were identified in hydrogen-rich water (HRW) and hydrogen inhalation (HI) group, respectively. Pathway enrichment analysis showed that HRW intake mainly affected starch and sucrose metabolism, and DMs in HI group were mainly enriched in arginine biosynthesis. 16S rRNA gene sequencing showed that HRW intake induced significant changes in the structure of gut microbiota, while no marked bacterial community differences was observed in HI group. HRW intake mainly induced significant increase in the abundance of Lactobacillus, Ruminococcus, Clostridium XI, and decrease in Bacteroides. HI mainly induced decreased abundances of Blautia and Paraprevotella. The results of this study provide basic data for further research on hydrogen medicine. Determination of the effects of hydrogen intervention on microbiota profiles could also shed light on identification of mechanism underlying the biological effects of molecular hydrogen.

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