scholarly journals MicroCT as a Useful Tool for Analysing the 3D Structure of Lichens and Quantifying Internal Cephalodia in Lobaria pulmonaria

2021 ◽  
Vol 1 (2) ◽  
pp. 189-200
Author(s):  
Julia Gerasimova ◽  
Bernhard Ruthensteiner ◽  
Andreas Beck

High-resolution X-ray computer tomography (microCT) is a well-established technique to analyse three-dimensional microstructures in 3D non-destructive imaging. The non-destructive three-dimensional analysis of lichens is interesting for many reasons. The examination of hidden structural characteristics can, e.g., provide information on internal structural features (form and distribution of fungal-supporting tissue/hypha), gas-filled spaces within the thallus (important for gas exchange and, thus, physiological processes), or yield information on the symbiont composition within the lichen, e.g., the localisation and amount of additional cyanobacteria in cephalodia. Here, we present the possibilities and current limitations for applying conventional laboratory-based high-resolution X-ray computer tomography to analyse lichens. MicroCT allows the virtual 3D reconstruction of a sample from 2D X-ray projections and is helpful for the non-destructive analysis of structural characters or the symbiont composition of lichens. By means of a quantitative 3D image analysis, the volume of internal cephalodia is determined for Lobaria pulmonaria and the external cephalodia of Peltigera leucophlebia. Nevertheless, the need for higher-resolution tomography for more detailed studies is emphasised. Particular challenges are the large sizes of datasets to be analysed and the high variability of the lichen microstructures.

Author(s):  
R. Gronsky

The phenomenon of clustering in Al-Ag alloys has been extensively studied since the early work of Guinierl, wherein the pre-precipitation state was characterized as an assembly of spherical, ordered, silver-rich G.P. zones. Subsequent x-ray and TEM investigations yielded results in general agreement with this model. However, serious discrepancies were later revealed by the detailed x-ray diffraction - based computer simulations of Gragg and Cohen, i.e., the silver-rich clusters were instead octahedral in shape and fully disordered, atleast below 170°C. The object of the present investigation is to examine directly the structural characteristics of G.P. zones in Al-Ag by high resolution transmission electron microscopy.


Author(s):  
Wenbing Yun ◽  
Steve Wang ◽  
David Scott ◽  
Kenneth W. Nill ◽  
Waleed S. Haddad

Abstract A high-resolution table-sized x-ray nanotomography (XRMT) tool has been constructed that shows the promise of nondestructively imaging the internal structure of a full IC stack with a spatial resolution better than 100 nm. Such a tool can be used to detect, localize, and characterize buried defects in the IC. By collecting a set of X-ray projections through the full IC (which may include tens of micrometers of silicon substrate and several layers of Cu interconnects) and applying tomographic reconstruction algorithms to these projections, a 3D volumetric reconstruction can be obtained, and analyzed for defects using 3D visualization software. XRMT is a powerful technique that will find use in failure analysis and IC process development, and may facilitate or supplant investigations using SEM, TEM, and FIB tools, which generally require destructive sample preparation and a vacuum environment.


Polymers ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 1271
Author(s):  
Andreas Koenig ◽  
Leonie Schmohl ◽  
Johannes Scheffler ◽  
Florian Fuchs ◽  
Michaela Schulz-Siegmund ◽  
...  

The aim of the study was to investigate the effect of X-rays used in micro X-ray computer tomography (µXCT) on the mechanical performance and microstructure of a variety of dental materials. Standardised bending beams (2 × 2 × 25 mm3) were forwarded to irradiation with an industrial tomograph. Using three-dimensional datasets, the porosity of the materials was quantified and flexural strength was investigated prior to and after irradiation. The thermal properties of irradiated and unirradiated materials were analysed and compared by means of differential scanning calorimetry (DSC). Single µXCT measurements led to a significant decrease in flexural strength of polycarbonate with acrylnitril-butadien-styrol (PC-ABS). No significant influence in flexural strength was identified for resin-based composites (RBCs), poly(methyl methacrylate) (PMMA), and zinc phosphate cement (HAR) after a single irradiation by measurement. However, DSC results suggest that changes in the microstructure of PMMA are possible with increasing radiation doses (multiple measurements, longer measurements, higher output power from the X-ray tube). In summary, it must be assumed that X-ray radiation during µXCT measurement at high doses can lead to changes in the structure and properties of certain polymers.


1988 ◽  
Vol 21 (4) ◽  
pp. 429-477 ◽  
Author(s):  
W. Kühlbrandt

As recently as 10 years ago, the prospect of solving the structure of any membrane protein by X-ray crystallography seemed remote. Since then, the threedimensional (3-D) structures of two membrane protein complexes, the bacterial photosynthetic reaction centres of Rhodopseudomonas viridis (Deisenhofer et al. 1984, 1985) and of Rhodobacter sphaeroides (Allen et al. 1986, 1987 a, 6; Chang et al. 1986) have been determined at high resolution. This astonishing progress would not have been possible without the pioneering work of Michel and Garavito who first succeeded in growing 3-D crystals of the membrane proteins bacteriorhodopsin (Michel & Oesterhelt, 1980) and matrix porin (Garavito & Rosenbusch, 1980). X-ray crystallography is still the only routine method for determining the 3-D structures of biological macromolecules at high resolution and well-ordered 3-D crystals of sufficient size are the essential prerequisite.


2003 ◽  
Vol 8 (1) ◽  
pp. 2-6 ◽  
Author(s):  
Wolfgang H Stuppy ◽  
Jessica A Maisano ◽  
Matthew W Colbert ◽  
Paula J Rudall ◽  
Timothy B Rowe

2018 ◽  
Vol 139 ◽  
pp. 75-82 ◽  
Author(s):  
A.H. Galmed ◽  
A. du Plessis ◽  
S.G. le Roux ◽  
E. Hartnick ◽  
H. Von Bergmann ◽  
...  

2015 ◽  
Vol 2015 ◽  
pp. 1-6 ◽  
Author(s):  
Yan Ye ◽  
Da Yin ◽  
Bin Wang ◽  
Qingwen Zhang

We report the synthesis of three-dimensional Fe3O4/graphene aerogels (GAs) and their application for the removal of arsenic (As) ions from water. The morphology and properties of Fe3O4/GAs have been characterized by scanning electron microscopy, transmission electron microscopy, X-ray diffraction, X-ray photoelectron spectroscopy, and superconducting quantum inference device. The 3D nanostructure shows that iron oxide nanoparticles are decorated on graphene with an interconnected network structure. It is found that Fe3O4/GAs own a capacity of As(V) ions adsorption up to 40.048 mg/g due to their remarkable 3D structure and existence of magnetic Fe3O4nanoparticles for separation. The adsorption isotherm matches well with the Langmuir model and kinetic analysis suggests that the adsorption process is pseudo-second-ordered. In addition to the excellent adsorption capability, Fe3O4/GAs can be easily and effectively separated from water, indicating potential applications in water treatment.


2021 ◽  
Author(s):  
Αλέξανδρος Εμμανουηλίδης

This thesis presents a multi-proxy reconstruction from 5 different coastal wetlands of southern Greece spanning in the Holocene period and an in-depth review and application of non-destructive systems (CT scanning, X-ray Fluorescence) in paleoenvironmental research. During this thesis, the acquired dataset used consisted of a) X-ray Fluorescence scanning (XRF), b) Computed Tomography (CT) scanning, c) Stable isotopes δ18O and δ13C, d) micropaleontology (foraminifera, ostracods, diatoms, pollen), e) mineralogical analysis, and f) standard sedimentological techniques (grain size, magnetic susceptibility (MS), Total Organic Carbon (TOC), carbonates content). The chronological framework for the sediment cores was established through 14C radiocarbon dating. The wetlands studied are Aliki salt pond (NE Gulf of Corinth), Klisova lagoon (SW Greece), lake Vouliagmeni (E Gulf of Corinth), Agoulinitsa marsh field (W Peloponnese) and Pappas lagoon (NW Peloponnese). The sites form an E-W transect of southern Greece, an area with high climatic and environmental spatial variability, whereas human occupancy on all areas is recorded from antiquity. Non-destructive, high-resolution techniques used in this thesis have been established as standard in the last decades and have been a great asset in geosciences. Computed Tomography (CT) was conducted in lake Vouliagmeni, Agoulinitsa marsh and Pappas lagoon cores. In contrast, XRF was performed on all core sections except for Pappas lagoon core, where the high assemblage of bivalve shells could lead to bias of Ca. The fundamental parameter behind CT analysis is the Hounsfield units that reflect relative density variations in the sediment. Correlation between HU values and heavy elements like Zr has been detected in all cores, whereas distinct sedimentological facies were recorded according to HU variations. In Agoulinitsa and Pappas lagoon, microstructural characteristics like shells/sediment ratio and root remnants were examined through 3D sections, in which HU boundaries were set accordingly. Lake Vouliagmeni sediment core was characterized by extreme stratigraphic variations with lamination structures alternating with homogenous deposits and event layers. Laminae thickness and boundaries were recorded through 3D rendered volumes with HU boundaries. Micro CT scanning and thin section analysis was also performed to cross-check possible variations. Event sedimentation layers were distinguished through the combined use of CT scanning, XRF and MS, with layers responding to increased HU, MS and Mn values. Statistical assessment of elemental distribution and HU revealed 3 different clusters. Cluster A responded to sedimentation during enhanced evaporation in the area, Cluster B emulated sedimentation during increased chemical weathering in the catchment, and Cluster C reflected the homogenous deposits. Aliki salt pond is located in a highly tectonic region, at the northeast part of the Gulf of Corinth in Greece. Beachrock deposits that form a barrier between the salt pond and the marine environment play an essential role in the evolution of the area. The chronological framework was set at ca. 3100 cal BP by four 14C radiocarbon dates and the established evolutionary model indicate four different changes taking place during this period in the study area. From around 3100 to 1600 cal BP, a transition from a closed to an open lagoonal environment, was identified, interrupted by a terrestrial fluvial deposit at ca. 2500 cal BP. A shift toward a closed lagoonal system at around 1600 cal BP and the establishment of a salt pond environment seem to correlate with tectonic activity. The study provides important information about the evolution of the coastal landscape in such an active tectonic region and points the interaction between regional human activity and climatic changes during the late-Holocene period.Klisova lagoon is located in the eastern part of Messolonghi-Etoliko wetland, the biggest lagoonal complex of Greece and an area of great environmental interest. For the last 4700 cal BP, the freshwater influx, the progradation of the Evinos river delta and related geomorphological changes control the environmental conditions (e.g. depth and salinity) in the lagoon system. Considering the centennial temporal resolution of our analyses, small offsets of c.a. 50 years due to the lack of regional reservoir correction do not impact the reported radiocarbon ages considerably. Prior to 4000 cal BP, a relatively shallow water depth, significant terrestrial/freshwater input and increased weathering in the lagoon area are inferred. Elemental proxies and increased dinoflagellate and foraminifera abundances, which indicate marine conditions with prominent freshwater influxes, point to the gradual deepening of the lagoon recorded at the drilling site up to 2000 cal BP. The marine and freshwater conditions equilibrium sets at 1300 cal BP, and the lagoonal system seems to reach its present state. Maxima of anthropogenic pollen indicators during the Mycenaean (3200 cal BP), Hellenistic (2200 cal BP) and Late Byzantine (800 cal BP) periods suggest intervals of increased anthropogenic activities in the study area. Lake Vouliagmeni is subjected to intense climatically and tectonic forces, causing stratigraphic variations, with laminated sediments frequently interrupted by homogenous and event sedimentation deposits. Lamination couplets consist of aragonite layers alternating with detrital and organic residues and form during periods of seawater intrusion and stratification of the lake water. The discontinuous occurrence of laminated deposits excludes a varve based chronology from being established but still highlights the susceptibility of the lake to record environmental and climatically driven changes. Our synthesis model for regional climatic reconstruction and local environmental changes derives from δ18O and δ13C data from the laminated and homogenous sediments studied separately depending on the dominant carbonate mineral. This is further strengthened by high-resolution geochemical proxies, diatom and sedimentological data. Regional climatic trajectories from key sites and possible links to the lake Vouliagmeni record are explored in response to atmospheric circulation patterns variations. Phases of overall humid conditions are recorded by the increased inflow of siliciclastic material in the lake and negative δ18Obulk values. In contrast, periods of marine intrusion and enhanced evaporation are recorded by aragonite precipitation, increased δ18OAr values and laminations. The driving mechanism behind laminae formation seems to be marine intrusions, leading to pycnocline stabilization and increased evaporation of lake surface waters during summer months. Climatic oscillations recorded during the Holocene, apart from their duration, do not exceed events of the last millennia.


2010 ◽  
pp. 109-117 ◽  
Author(s):  
Neda Motchurova-Dekova ◽  
David Harper

Synchrotron radiation X-ray tomographic microscopy (SRXTM) is a non-destructive technique for the investigation and visualization of the internal features of solid opaque objects, which allows reconstruction of a complete three-dimensional image of internal structures by recording of the differences in the effects on the passage of waves of energy reacting with those structures. Contrary to X-rays, produced in a conventional X-ray tube, the intense synchrotron light beams are sharply focused like a laser beam. We report encouraging results from the use of SRXTM for purely taxonomic purposes in brachiopods: an attempt to find a non-destructive and more efficient alternative to serial sectioning and several other methods of dissection together with the non-destructive method of X-ray computerised micro-tomography. Two brachiopod samples were investigated using SRXTM. In ?Rhynchonella? flustracea it was possible to visualise the 3D shape of the crura and dental plates. In Terebratulina imbricata it was possible to reveal the form of the brachidium. It is encouraging that we have obtained such promising results using SRXTM with our very first two fortuitous samples, which had respectively fine-grained limestone and marl as infilling sediment, in contrast to the discouraging results communicated to us by some colleagues who have tested specimens with such infillings using X-ray micro-tomography. In future the holotypes, rare museum specimens or delicate Recent material may be preferentially subjected to this mode of analysis.


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