scholarly journals Perception of Biocontrol Potential of Bacillusinaquosorum KR2-7 against Tomato Fusarium Wilt through Merging Genome Mining with Chemical Analysis

Biology ◽  
2022 ◽  
Vol 11 (1) ◽  
pp. 137
Author(s):  
Maedeh Kamali ◽  
Dianjing Guo ◽  
Shahram Naeimi ◽  
Jafar Ahmadi
Keyword(s):  
Chemical Analysis ◽  
Plant Growth ◽  
Fusarium Wilt ◽  
Plant Growth Promotion ◽  
Growth Promotion ◽  
Genome Mining ◽  
Gene Clusters ◽  
Systemic Resistance ◽  
Plant Colonization ◽  
Biocontrol Potential

Tomato Fusarium wilt, caused by Fusarium oxysporum f. sp. lycopersici (Fol), is a destructive disease that threatens the agricultural production of tomatoes. In the present study, the biocontrol potential of strain KR2-7 against Fol was investigated through integrated genome mining and chemical analysis. Strain KR2-7 was identified as B. inaquosorum based on phylogenetic analysis. Through the genome mining of strain KR2-7, we identified nine antifungal and antibacterial compound biosynthetic gene clusters (BGCs) including fengycin, surfactin and Bacillomycin F, bacillaene, macrolactin, sporulation killing factor (skf), subtilosin A, bacilysin, and bacillibactin. The corresponding compounds were confirmed through MALDI-TOF-MS chemical analysis. The gene/gene clusters involved in plant colonization, plant growth promotion, and induced systemic resistance were also identified in the KR2-7 genome, and their related secondary metabolites were detected. In light of these results, the biocontrol potential of strain KR2-7 against tomato Fusarium wilt was identified. This study highlights the potential to use strain KR2-7 as a plant-growth promotion agent.

scholarly journals Genome Mining and Evaluation of the Biocontrol Potential of Pseudomonas fluorescens BRZ63, a New Endophyte of Oilseed Rape (Brassica napus L.) against Fungal Pathogens

2020 ◽  
Vol 21 (22) ◽  
pp. 8740
Author(s):  
Daria Chlebek ◽  
Artur Pinski ◽  
Joanna Żur ◽  
Justyna Michalska ◽  
Katarzyna Hupert-Kocurek
Keyword(s):  
Brassica Napus ◽  
Plant Growth ◽  
Pseudomonas Fluorescens ◽  
Oilseed Rape ◽  
Plant Growth Promotion ◽  
Fungal Pathogens ◽  
Growth Promotion ◽  
Genome Mining ◽  
Plant Colonization ◽  
Brassica Napus L

Endophytic bacteria hold tremendous potential for use as biocontrol agents. Our study aimed to investigate the biocontrol activity of Pseudomonas fluorescens BRZ63, a new endophyte of oilseed rape (Brassica napus L.) against Rhizoctonia solani W70, Colletotrichum dematium K, Sclerotinia sclerotiorum K2291, and Fusarium avenaceum. In addition, features crucial for biocontrol, plant growth promotion, and colonization were assessed and linked with the genome sequences. The in vitro tests showed that BRZ63 significantly inhibited the mycelium growth of all tested pathogens and stimulated germination and growth of oilseed rape seedlings treated with fungal pathogens. The BRZ63 strain can benefit plants by producing biosurfactants, siderophores, indole-3-acetic acid (IAA), 1-aminocyclopropane-1-carboxylate (ACC) deaminase, and ammonia as well as phosphate solubilization. The abilities of exopolysaccharide production, autoaggregation, and biofilm formation additionally underline its potential to plant colonization and hence biocontrol. The effective colonization properties of the BRZ63 strain were confirmed by microscopy observations of EGFP-expressing cells colonizing the root surface and epidermal cells of Arabidopsis thaliana Col-0. Genome mining identified many genes related to the biocontrol process, such as transporters, siderophores, and other secondary metabolites. All analyses revealed that the BRZ63 strain is an excellent endophytic candidate for biocontrol of various plant pathogens and plant growth promotion.

scholarly journals Functional Analysis and Genome Mining Reveal High Potential of Biocontrol and Plant Growth Promotion in Nodule-Inhabiting Bacteria Within Paenibacillus polymyxa Complex

2021 ◽  
Vol 11 ◽  
Author(s):  
Md. Arshad Ali ◽  
Yang Lou ◽  
Rahila Hafeez ◽  
Xuqing Li ◽  
Afsana Hossain ◽  
...  
Keyword(s):  
Plant Growth ◽  
Broad Spectrum ◽  
Plant Growth Promotion ◽  
Growth Promotion ◽  
Genome Mining ◽  
Hydrolytic Enzymes ◽  
Phytopathogenic Fungi ◽  
Plant Colonization ◽  
In Planta ◽  
Antifungal Activities

Bacteria belonging to the genus Paenibacillus were frequently isolated from legume nodules. The nodule-inhabiting Paenibacillus as a resource of biocontrol and plant growth-promoting endophytes has rarely been explored. This study explored the nodule-inhabiting Paenibacillus’ antifungal activities and biocontrol potentials against broad-spectrum important phytopathogenic fungi. We collected strains which were isolated from nodules of Robinia pseudoacacia, Dendrolobium triangulare, Ormosia semicastrata, Cicer arietinum, Acacia crassicarpa, or Acacia implexa and belong to P. peoriae, P. kribbensis, P. endophyticus, P. enshidis, P. puldeungensis, P. taichungensis, or closely related to P. kribbensis, or P. anseongense. These nodule-inhabiting Paenibacillus showed diverse antagonistic activities against five phytopathogenic fungi (Fusarium graminearum, Magnaporthe oryzae, Rhizoctonia solani, Sclerotinia sclerotiorum, and Botrytis cinerea). Six strains within the P. polymyxa complex showed broad-spectrum and potent activities against all the five pathogens, and produced multiple hydrolytic enzymes, siderophores, and lipopeptide fusaricidins. Fusaricidins are likely the key antimicrobials responsible for the broad-spectrum antifungal activities. The nodule-inhabiting strains within the P. polymyxa complex were able to epiphytically and endophytically colonize the non-host wheat plants, produce indole acetic acids (IAA), and dissolve calcium phosphate and calcium phytate. P. peoriae strains RP20, RP51, and RP62 could fix N2. P. peoriae RP51 and Paenibacillus sp. RP31, which showed potent plant colonization and plant growth-promotion competence, effectively control fungal infection in planta. Genome mining revealed that all strains (n = 76) within the P. polymyxa complex contain ipdC gene encoding indole-3-pyruvate decarboxylase for biosynthesis of IAA, 96% (n = 73) contain the fus cluster for biosynthesis of fusaricidins, and 43% (n = 33) contain the nif cluster for nitrogen fixation. Together, our study highlights that endophytic strains within the P. polymyxa complex have a high probability to be effective biocontrol agents and biofertilizers and we propose an effective approach to screen strains within the P. polymyxa complex.

scholarly journals Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics

Genes ◽  
2019 ◽  
Vol 10 (8) ◽  
pp. 601 ◽  
Author(s):  
Johanna Nelkner ◽  
Gonzalo Torres Tejerizo ◽  
Julia Hassa ◽  
Timo Wentong Lin ◽  
Julian Witte ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Plant Growth ◽  
Plant Growth Promotion ◽  
Growth Promotion ◽  
Genome Mining ◽  
Gene Clusters ◽  
Disease Suppression ◽  
Biocontrol Agents ◽  
Circular Chromosome ◽  
Pseudomonas Brassicacearum

The genus Pseudomonas comprises many known plant-associated microbes with plant growth promotion and disease suppression properties. Genome-based studies allow the prediction of the underlying mechanisms using genome mining tools and the analysis of the genes unique for a strain by implementing comparative genomics. Here, we provide the genome sequence of the strain Pseudomonas brassicacearum 3Re2-7, formerly known as P. trivialis and P. reactans, elucidate its revised taxonomic classification, experimentally verify the gene predictions by transcriptome sequencing, describe its genetic biocontrol potential and contextualize it to other known Pseudomonas biocontrol agents. The P. brassicacearum 3Re2-7 genome comprises a circular chromosome with a size of 6,738,544 bp and a GC-content of 60.83%. 6267 genes were annotated, of which 6113 were shown to be transcribed in rich medium and/or in the presence of Rhizoctonia solani. Genome mining identified genes related to biocontrol traits such as secondary metabolite and siderophore biosynthesis, plant growth promotion, inorganic phosphate solubilization, biosynthesis of lipo- and exopolysaccharides, exoproteases, volatiles and detoxification. Core genome analysis revealed, that the 3Re2-7 genome exhibits a high collinearity with the representative genome for the species, P. brassicacearum subsp. brassicacearum NFM421. Comparative genomics allowed the identification of 105 specific genes and revealed gene clusters that might encode specialized biocontrol mechanisms of strain 3Re2-7. Moreover, we captured the transcriptome of P. brassicacearum 3Re2-7, confirming the transcription of the predicted biocontrol-related genes. The gene clusters coding for 2,4-diacetylphloroglucinol (phlABCDEFGH) and hydrogen cyanide (hcnABC) were shown to be highly transcribed. Further genes predicted to encode putative alginate production enzymes, a pyrroloquinoline quinone precursor peptide PqqA and a matrixin family metalloprotease were also found to be highly transcribed. With this study, we provide a basis to further characterize the mechanisms for biocontrol in Pseudomonas species, towards a sustainable and safe application of P. brassicacearum biocontrol agents.

scholarly journals Streptomyces consortia-mediated plant defense against Fusarium wilt and plant growth-promotion in chickpea

2021 ◽  
pp. 104961
Author(s):  
Sravani Ankati ◽  
Vadlamudi Srinivas ◽  
Sambangi Pratyusha ◽  
Subramaniam Gopalakrishnan
Keyword(s):  
Plant Growth ◽  
Plant Defense ◽  
Fusarium Wilt ◽  
Plant Growth Promotion ◽  
Growth Promotion

Cyanobacteria mediated plant growth promotion and bioprotection against Fusarium wilt in tomato

2013 ◽  
Vol 136 (2) ◽  
pp. 337-353 ◽  
Author(s):  
Radha Prasanna ◽  
Vidhi Chaudhary ◽  
Vishal Gupta ◽  
Santosh Babu ◽  
Arun Kumar ◽  
...  
Keyword(s):  
Plant Growth ◽  
Fusarium Wilt ◽  
Plant Growth Promotion ◽  
Growth Promotion

scholarly journals Bacterial Formulations in Induction of Resistance and Growth Promotion of Tomato Plants

2018 ◽  
Vol 10 (10) ◽  
pp. 493
Author(s):  
José R. M. Campos Neto ◽  
Rafael Ribeiro Chaves ◽  
Diogo Herison Silva Sardinha ◽  
Luiz Gustavo de Lima Melo ◽  
Antônia Alice Costa Rodrigues
Keyword(s):  
Plant Growth ◽  
Fusarium Wilt ◽  
Seed Treatment ◽  
Dry Matter ◽  
Growth Promotion ◽  
Systemic Resistance ◽  
Tomato Plants ◽  
Vigor Index ◽  
Promote Plant Growth ◽  
Induction Of Resistance

The objective of this work was to evaluate the effectiveness of seed treatment with fresh suspensions and powder formulations with Bacillus methylotrophicus to promote plant growth and induction of resistance against fusarium wilt (Fusarium oxysporum f. sp. lycopersici) in tomato plants under greenhouse conditions, verifying the occurrence of morphological and biochemical changes in the evaluated plants. Powder formulations based on Cassava (Manihot esculenta), Arrowroot (Maranta arundinacea) and sodium alginate containing Bacillus, in addition to the commercial product Quartz®, were used to microbiolize the tomato seeds of the cultivar Santa Cruz. The formulations promoted plant growth, with a seedling vigor index greater than 50% for all treatments containing B. mthylotrophicus, in addition to a significant increase in total dry matter. The treatments induced systemic resistance, controlling the fusarium wilt with a 75% reduction of the disease and activation of enzymes such as peroxidase and polyphenoloxidase, only β-1,3-glucanase presented less activity than controls (treatments without B. mthylotrophicus). Thus, the use of formulations containing Bacillus are efficient in promoting plant growth of tomato plants and in inducing resistance to the control of fusarium wilt.

scholarly journals Plant growth promoting endophyte Burkholderia contaminans NZ antagonizes phytopathogen Macrophomina phaseolina through melanin synthesis and pyrrolnitrin inhibition

PLoS ONE ◽  
2021 ◽  
Vol 16 (9) ◽  
pp. e0257863
Author(s):  
Nazia R. Zaman ◽  
Umar F. Chowdhury ◽  
Rifath N. Reza ◽  
Farhana T. Chowdhury ◽  
Mrinmoy Sarker ◽  
...  
Keyword(s):  
Plant Growth ◽  
Growth Promotion ◽  
Genome Mining ◽  
Gene Clusters ◽  
Macrophomina Phaseolina ◽  
Melanin Synthesis ◽  
Burkholderia Contaminans ◽  
Plant Growth Promoting ◽  
Growth Promoting

The endophytic bacterium Burkholderia contaminans NZ was isolated from jute, which is an important fiber-producing plant. This bacterium exhibits significant growth promotion activity in in vivo pot experiments, and like other plant growth-promoting (PGP) bacteria fixes nitrogen, produces indole acetic acid (IAA), siderophore, and 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity. B. contaminans NZ is considered to exert a promising growth inhibitory effect on Macrophomina phaseolina, a phytopathogen responsible for infecting hundreds of crops worldwide. This study aimed to identify the possibility of B. contaminans NZ as a safe biocontrol agent and assess its effectiveness in suppressing phytopathogenic fungi, especially M. phaseolina. Co-culture of M. phaseolina with B. contaminans NZ on both solid and liquid media revealed appreciable growth suppression of M. phaseolina and its chromogenic aberration in liquid culture. Genome mining of B. contaminans NZ using NaPDoS and antiSMASH revealed gene clusters that displayed 100% similarity for cytotoxic and antifungal substances, such as pyrrolnitrin. GC-MS analysis of B. contaminans NZ culture extracts revealed various bioactive compounds, including catechol; 9,10-dihydro-12’-hydroxy-2’-methyl-5’-(phenylmethyl)- ergotaman 3’,6’,18-trione; 2,3-dihydro-3,5- dihydroxy-6-methyl-4H-pyran-4-one; 1-(1,6-Dioxooctadecyl)- pyrrolidine; 9-Octadecenamide; and 2- methoxy- phenol. These compounds reportedly exhibit tyrosinase inhibitory, antifungal, and antibiotic activities. Using a more targeted approach, an RP-HPLC purified fraction was analyzed by LC-MS, confirming the existence of pyrrolnitrin in the B. contaminans NZ extract. Secondary metabolites, such as catechol and ergotaman, have been predicted to inhibit melanin synthesis in M. phaseolina. Thus, B. contaminans NZ appears to inhibit phytopathogens by apparently impairing melanin synthesis and other potential biochemical pathways, exhibiting considerable fungistatic activity.

scholarly journals Influence of Bacillus Spp. Based Bioproducts on Potato Plant Growth and Control of Rhizoctonia Solani

2019 ◽  
Vol 76 (1) ◽  
pp. 29
Author(s):  
Sorina DINU ◽  
Oana Alina BOIU-SICUIA ◽  
Florica CONSTANTINESCU
Keyword(s):  
Plant Growth ◽  
Rhizoctonia Solani ◽  
Plant Growth Promotion ◽  
Growth Promotion ◽  
Aqueous Suspension ◽  
Potato Plants ◽  
Bacillus Spp ◽  
Seeding Material ◽  
Biocontrol Potential ◽  
And Control

Some Bacillus based bioproducts were analyzed for their plant growth promotion and Rhizoctonia solani biocontrol potential in potato plants. The bioproducts were formulated as concentrated aqueous suspension, each containing one of the following plant beneficial bacteria: Bacillus safensis Rd.b2, Bacillus spp. 75.1s and Cp.b4 strains. These were applied on potato seeding material in order to evaluate plant growth promotion effects. The biocontrol efficacy was also evaluated, using Rhizoctonia solani DSM 63002 as plant pathogen, and Prestige 290FS as reference chemical treatment.In the plant growth-promotion experiments, several biologic parameters were biometrically evaluated. Best results regarding plant growth and vigor were obtained using CropMax, a commercial phytostimulatory product. However, the bacterial treatment with Bacillus spp. Cp.b4 and 75.1s showed an improved plant growth compared to the untreated control. An efficacy of 93.75% against Rhizoctonia dumping-off was registered when using the Prestige 290FS chemical control. Mix treatments based on this pesticide, in low dose, combined with Cp.b4 or 75.1s biocontrol strains significantly reduced the pathogenic attack, showing 85 to 87.5% efficacy.The present research demonstrated that the bacterial bioproducts based on Bacillus spp. 75.1s and Cp.b4 strains increase plant growth and are highly effective in controlling Rhizoctonia attack in potato plants.

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