scholarly journals Spatial and Temporal Scaling of Microtubules and Mitotic Spindles

Cells ◽  
2022 ◽  
Vol 11 (2) ◽  
pp. 248
Author(s):  
Benjamin Lacroix ◽  
Julien Dumont

During cell division, the mitotic spindle, a macromolecular structure primarily comprised of microtubules, drives chromosome alignment and partitioning between daughter cells. Mitotic spindles can sense cellular dimensions in order to adapt their length and mass to cell size. This scaling capacity is particularly remarkable during early embryo cleavage when cells divide rapidly in the absence of cell growth, thus leading to a reduction of cell volume at each division. Although mitotic spindle size scaling can occur over an order of magnitude in early embryos, in many species the duration of mitosis is relatively short, constant throughout early development and independent of cell size. Therefore, a key challenge for cells during embryo cleavage is not only to assemble a spindle of proper size, but also to do it in an appropriate time window which is compatible with embryo development. How spatial and temporal scaling of the mitotic spindle is achieved and coordinated with the duration of mitosis remains elusive. In this review, we will focus on the mechanisms that support mitotic spindle spatial and temporal scaling over a wide range of cell sizes and cellular contexts. We will present current models and propose alternative mechanisms allowing cells to spatially and temporally coordinate microtubule and mitotic spindle assembly.

2008 ◽  
Vol 180 (3) ◽  
pp. 537-548 ◽  
Author(s):  
Graham J. Buttrick ◽  
Luke M.A. Beaumont ◽  
Jessica Leitch ◽  
Christopher Yau ◽  
Julian R. Hughes ◽  
...  

Correct positioning and morphology of the mitotic spindle is achieved through regulating the interaction between microtubules (MTs) and cortical actin. Here we find that, in the Drosophila melanogaster early embryo, reduced levels of the protein kinase Akt result in incomplete centrosome migration around cortical nuclei, bent mitotic spindles, and loss of nuclei into the interior of the embryo. We show that Akt is enriched at the embryonic cortex and is required for phosphorylation of the glycogen synthase kinase-3β homologue Zeste-white 3 kinase (Zw3) and for the cortical localizations of the adenomatosis polyposis coli (APC)–related protein APC2/E-APC and the MT + Tip protein EB1. We also show that reduced levels of Akt result in mislocalization of APC2 in postcellularized embryonic mitoses and misorientation of epithelial mitotic spindles. Together, our results suggest that Akt regulates a complex containing Zw3, Armadillo, APC2, and EB1 and that this complex has a role in stabilizing MT–cortex interactions, facilitating both centrosome separation and mitotic spindle orientation.


Author(s):  
Kent McDonald ◽  
David Mastronarde ◽  
Rubai Ding ◽  
Eileen O'Toole ◽  
J. Richard McIntosh

Mammalian spindles are generally large and may contain over a thousand microtubules (MTs). For this reason they are difficult to reconstruct in three dimensions and many researchers have chosen to study the smaller and simpler spindles of lower eukaryotes. Nevertheless, the mammalian spindle is used for many experimental studies and it would be useful to know its detailed structure.We have been using serial cross sections and computer reconstruction methods to analyze MT distributions in mitotic spindles of PtK cells, a mammalian tissue culture line. Images from EM negatives are digtized on a light box by a Dage MTI video camera containing a black and white Saticon tube. The signal is digitized by a Parallax 1280 graphics device in a MicroVax III computer. Microtubules are digitized at a magnification such that each is 10-12 pixels in diameter.


Author(s):  
J. Holy ◽  
G. Schatten

One of the classic limitations of light microscopy has been the fact that three dimensional biological events could only be visualized in two dimensions. Recently, this shortcoming has been overcome by combining the technologies of laser scanning confocal microscopy (LSCM) and computer processing of microscopical data by volume rendering methods. We have employed these techniques to examine morphogenetic events characterizing early development of sea urchin embryos. Specifically, the fourth cleavage division was examined because it is at this point that the first morphological signs of cell differentiation appear, manifested in the production of macromeres and micromeres by unequally dividing vegetal blastomeres.The mitotic spindle within vegetal blastomeres undergoing unequal cleavage are highly polarized and develop specialized, flattened asters toward the micromere pole. In order to reconstruct the three-dimensional features of these spindles, both isolated spindles and intact, extracted embryos were fluorescently labeled with antibodies directed against either centrosomes or tubulin.


2021 ◽  
Author(s):  
Subhadeep Sarkar ◽  
Mathias Horstmann ◽  
Tore Oian ◽  
Piotr Byrski ◽  
George Lawrence ◽  
...  

Abstract One of the crucial components of well integrity evaluation in offshore drilling is to determine the cement bond quality assuring proper hydraulic sealing. On the Norwegian Continental Shelf (NCS) an industry standard as informative reference imposes verification of cement length and potential barriers using bonding logs. Traditionally, for the last 50 years, wireline (WL) sonic tools have been extensively used for this purpose. However, the applicability of logging-while-drilling (LWD) sonic tools for quantitative cement evaluation was explored in the recent development drilling campaign on the Dvalin Field in the Norwegian Sea, owing to significant advantages on operational efficiency and tool conveyance in any well trajectory. Cement bond evaluation from conventional peak-to-peak amplitude method has shown robust results up to bond indexes of 0.6 for LWD sonic tools. Above this limit, the casing signal is smaller than the collar signal and the amplitude method loses sensitivity to bonding. This practical challenge in the LWD realm was overcome through the inclusion of attenuation rate measurements, which responds accordingly in higher bonding environments. The two methods are used in a hybrid approach providing a full range quantitative bond index (QBI) introduced by Izuhara et al. (2017). In order to conform with local requirements related to well integrity and to ascertain the QBI potential from LWD monopole sonic, a wireline cement bond log (CBL) was acquired in the first well of the campaign for comparison. This enabled the strategic deployment of LWD QBI service in subsequent wells. LWD sonic monopole data was acquired at a controlled speed of 900ft/h. The high-fidelity waveforms were analyzed in a suitable time window and both amplitude- and attenuation-based bond indexes were derived. The combined hybrid bond index showed an excellent match with the wireline reference CBL, both in zones of high as well as lower cement bonding. The presence of formation arrivals was also in good correlation with zones of proper bonding distinguishable on the QBI results. This established the robustness of the LWD cement logging and ensured its applicability in the rest of the campaign which was carried out successfully. While the results from LWD cement evaluation service are omnidirectional, it comes with a wide range of benefits related to rig cost or conveyance in tough borehole trajectories. Early evaluation of cement quality by LWD sonic tools helps to provide adequate time for taking remedial actions if necessary. The LWD sonic as part of the drilling BHA enables this acquisition and service in non-dedicated runs, with the possibility of multiple passes for observing time-lapse effects. Also, the large sizes of LWD tools relative to the wellbore ensures a lower signal attenuation in the annulus and more effective stabilization, thereby providing a reliable bond index.


Author(s):  
Robert C. Edgar

AbstractMapping of reads to reference sequences is an essential step in a wide range of biological studies. The large size of datasets generated with next-generation sequencing technologies motivates the development of fast mapping software. Here, I describe URMAP, a new read mapping algorithm. URMAP is an order of magnitude faster than BWA and Bowtie2 with comparable accuracy on a benchmark test using simulated paired 150nt reads of a well-studied human genome. Software is freely available at https://drive5.com/urmap.


2014 ◽  
Vol 2 (2) ◽  
pp. 1047-1092 ◽  
Author(s):  
M. Attal ◽  
S. M. Mudd ◽  
M. D. Hurst ◽  
B. Weinman ◽  
K. Yoo ◽  
...  

Abstract. The characteristics of the sediment transported by rivers (e.g., sediment flux, grain size distribution – GSD –) dictate whether rivers aggrade or erode their substrate. They also condition the architecture and properties of sedimentary successions in basins. In this study, we investigate the relationship between landscape steepness and the grain size of hillslope and fluvial sediments. The study area is located within the Feather River Basin in Northern California, and studied basins are underlain exclusively by tonalite lithology. Erosion rates in the study area vary over an order of magnitude, from > 250 mm ka−1 in the Feather River canyon to < 15 mm ka−1 on an adjacent low relief plateau. We find that the coarseness of hillslope sediment increases with increasing hillslope steepness and erosion rates. We hypothesize that, in our soil samples, the measured ten-fold increase in D50 and doubling of the amount of fragments larger than 1 mm when slope increases from 0.38 to 0.83 m m−1 is due to a decrease in the residence time of rock fragments, causing particles to be exposed for shorter periods of time to processes that can reduce grain size. For slopes in excess of 0.7 m m−1, landslides and scree cones supply much coarser sediment to rivers, with D50 and D84 more than one order of magnitude larger than in soils. In the tributary basins of the Feather River, a prominent break in slope developed in response to the rapid incision of the Feather River. Downstream of the break in slope, fluvial sediment grain size increases, due to an increase in flow competence (mostly driven by channel steepening) but also by a change in sediment source and in sediment dynamics: on the plateau upstream of the break in slope, rivers transport easily mobilised fine-grained sediment derived exclusively from soils. Downstream of the break in slope, mass wasting processes supply a wide range of grain sizes that rivers entrain selectively, depending on the competence of their flow. Our results also suggest that in this study site, hillslopes respond rapidly to an increase in the rate of base-level lowering compared to rivers.


2020 ◽  
Author(s):  
Luka Šupraha ◽  
Jorijntje Henderiks

Abstract. The biogeochemical performance of coccolithophores is defined by their overall abundance in the oceans, but also by a wide range in cell size, degree of calcification and carbon production rates between different species. Species’ sensitivity to environmental forcing has been suggested to relate to their cellular PIC : POC ratio and other physiological constraints. Understanding both the short and longer-term adaptive strategies of different coccolithophore lineages, and how these in turn shape the biogeochemical role of the group, is therefore crucial for modeling the ongoing changes in the global carbon cycle. Here we present data on the phenotypic evolution of a large and heavily-calcified genus Helicosphaera (order Zygodiscales) over the past 15 million years (Ma), at two deep-sea drill sites from the tropical Indian Ocean and temperate South Atlantic. The modern species Helicosphaera carteri, which displays eco-physiological adaptations in modern strains, was used to benchmark the use of its coccolith morphology as a physiological proxy in the fossil record. Our results show that, on the single-genotype level, coccolith morphology has no correlation with physiological traits in H. carteri. However, significant correlations of coccolith morphometric parameters with cell size and physiological rates do emerge once multiple genotypes or closely related lineages are pooled together. Using this insight, we interpret the phenotypic evolution in Helicosphaera as a global, resource limitation-driven selection for smaller cells, which appears to be a common adaptive trait among different coccolithophore lineages, from the warm and high-CO2 world of the middle Miocene to the cooler and low-CO2 conditions of the Pleistocene. However, despite a significant decrease in mean size, Helicosphaera kept relatively stable PIC : POC (as inferred from the coccolith aspect ratio) and thus highly conservative biogeochemical output on the cellular level. We argue that this supports its status as an obligate calcifier, like other large and heavily-calcified genera such as Calcidiscus and Coccolithus, and that other adaptive strategies, beyond size-adaptation, must support the persistent, albeit less abundant, occurrence of these taxa. This is in stark contrast with the ancestral lineage of Emiliania and Gephyrocapsa, which not only decreased in mean size but also displayed much higher phenotypic plasticity in degree of calcification while becoming globally more dominant in plankton communities.


2005 ◽  
Vol 16 (4) ◽  
pp. 1584-1592 ◽  
Author(s):  
J. Christian Ambrose ◽  
Wuxing Li ◽  
Adam Marcus ◽  
Hong Ma ◽  
Richard Cyr

Diverse kinesin motor proteins are involved in spindle function; however, the mechanisms by which they are targeted to specific sites within spindles are not well understood. Here, we show that a fusion between yellow fluorescent protein (YFP) and a minus-end–directed Kinesin-14 (C-terminal family) from Arabidopsis, ATK5, localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. Notably, in Arabidopsis interphase cells, YFP::ATK5 localizes to microtubules with a preferential enrichment at growing plus-ends; indicating ATK5 is a plus-end tracking protein (+TIP). This +TIP activity is conferred by regions outside of the C-terminal motor domain, which reveals the presence of independent plus-end tracking and minus-end motor activities within ATK5. Furthermore, mitotic spindles of atk5 null mutant plants are abnormally broadened. Based on these data, we propose a model in which ATK5 uses plus-end tracking to reach spindle midzones, where it then organizes microtubules via minus-end–directed motor activity.


1997 ◽  
Vol 16 (6) ◽  
pp. 545-559 ◽  
Author(s):  
Edward J. Calabrese ◽  
Linda A. Baldwin

A comprehensive effort was undertaken to identify articles demonstrating chemical hormesis. Nearly 4000 potentially relevant articles were retrieved from preliminary computer searches utilizing various keyword descriptors and extensive cross-referencing. A priori evaluation criteria were established including study design features (e.g., number of doses, dose range), statistical analysis, and reproducibility of results. Evidence of chemical hormesis was judged to have occurred in approximately 350 of the 4000 studies evaluated. Chemical hormesis was observed in a wide range of taxonomic groups and involved agents representing highly diverse chemical classes, many of potential environmental relevance. Numerous biologic endpoints were assessed, with growth responses the most prevalent, followed by metabolic effects, longevity, reproductive responses, and survival. Hormetic responses were generally observed to be of limited magnitude with the average low-dose maximum stimulation approximately 50% greater than controls. The hormetic dose-response range was generally limited to about one order of magnitude with the upper end of the hormetic curve approaching the estimated no-observed-effect level (NOEL) for the particular endpoint. Based on the evaluation criteria, high to moderate evidence of hormesis was observed in studies comprised of ≥ doses with <3 doses in the hormetic zone. The present analysis suggests that chem ical hormesis is a reproducible and generalizable biologic phenomenon. Over the last decade advances have been made providing mechanistic insight helpful in explaining the phenomenon of chemical hormesis in multiple biologic systems with various endpoints. The reason for the uncertainty surrounding the existence of hormesis as a “real phenomenon” is believed to be the result of its relatively infrequent observation in the literature due to experimental design considerations, especially with respect to the number of doses, range of doses, and endpoint selection.


2017 ◽  
Vol 28 (11) ◽  
pp. 1519-1529 ◽  
Author(s):  
Alison K. Spencer ◽  
Andrew J. Schaumberg ◽  
Jennifer A. Zallen

Spatially organized macromolecular complexes are essential for cell and tissue function, but the mechanisms that organize micron-scale structures within cells are not well understood. Microtubule-based structures such as mitotic spindles scale with cell size, but less is known about the scaling of actin structures within cells. Actin-rich denticle precursors cover the ventral surface of the Drosophila embryo and larva and provide templates for cuticular structures involved in larval locomotion. Using quantitative imaging and statistical modeling, we demonstrate that denticle number and spacing scale with cell length over a wide range of cell sizes in embryos and larvae. Denticle number and spacing are reduced under space-limited conditions, and both features robustly scale over a 10-fold increase in cell length during larval growth. We show that the relationship between cell length and denticle spacing can be recapitulated by specific mathematical equations in embryos and larvae and that accurate denticle spacing requires an intact microtubule network and the microtubule minus end–binding protein, Patronin. These results identify a novel mechanism of micro­tubule-dependent actin scaling that maintains precise patterns of actin organization during tissue growth.


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