scholarly journals Phylogenetic Relationships, Speciation, and Origin of Armillaria in the Northern Hemisphere: A Lesson Based on rRNA and Elongation Factor 1-Alpha

2021 ◽  
Vol 7 (12) ◽  
pp. 1088
Author(s):  
Junmin Liang ◽  
Lorenzo Pecoraro ◽  
Lei Cai ◽  
Zhilin Yuan ◽  
Peng Zhao ◽  
...  

Armillaria species have a global distribution and play various roles in the natural ecosystems, e.g., pathogens, decomposers, and mycorrhizal associates. However, their taxonomic boundaries, speciation processes, and origin are poorly understood. Here, we used a phylogenetic approach with 358 samplings from Europe, East Asia, and North America to delimit the species boundaries and to discern the evolutionary forces underpinning divergence and evolution. Three species delimitation methods indicated multiple unrecognized phylogenetic species, and biological species recognition did not reflect the natural evolutionary relationships within Armillaria; for instance, biological species of A. mellea and D. tabescens are divergent and cryptic species/lineages exist associated with their geographic distributions in Europe, North America, and East Asia. While the species-rich and divergent Gallica superclade might represent three phylogenetic species (PS I, PS II, and A. nabsnona) that undergo speciation. The PS II contained four lineages with cryptic diversity associated with the geographic distribution. The genus Armillaria likely originated from East Asia around 21.8 Mya in early Miocene when Boreotropical flora (56–33.9 Mya) and the Bering land bridge might have facilitated transcontinental dispersal of Armillaria species. The Gallica superclade arose at 9.1 Mya and the concurrent vicariance events of Bering Strait opening and the uplift of the northern Tibetan plateau might be important factors in driving the lineage divergence.

2020 ◽  
Vol 2020 ◽  
pp. 1-13
Author(s):  
Kole F. Adelalu ◽  
Xu Zhang ◽  
Xiaojian Qu ◽  
Jacob B. Landis ◽  
Jun Shen ◽  
...  

Investigating the biogeographical disjunction of East Asian and North American flora is key to understanding the formation and dynamics of biodiversity in the Northern Hemisphere. The small Cupressaceae genus Thuja, comprising five species, exhibits a typical disjunct distribution in East Asia and North America. Owing to obscure relationships, the biogeographical history of the genus remains controversial. Here, complete plastomes were employed to investigate the plastome evolution, phylogenetic relationships, and biogeographic history of Thuja. All plastomes of Thuja share the same gene content arranged in the same order. The loss of an IR was evident in all Thuja plastomes, and the B-arrangement as previously recognized was detected. Phylogenomic analyses resolved two sister pairs, T. standishii-T. koraiensis and T. occidentalis-T. sutchuenensis, with T. plicata sister to T. occidentalis-T. sutchuenensis. Molecular dating and biogeographic results suggest the diversification of Thuja occurred in the Middle Miocene, and the ancestral area of extant species was located in northern East Asia. Incorporating the fossil record, we inferred that Thuja likely originated from the high-latitude areas of North America in the Paleocene with a second diversification center in northern East Asia. The current geographical distribution of Thuja was likely shaped by dispersal events attributed to the Bering Land Bridge in the Miocene and subsequent vicariance events accompanying climate cooling. The potential effect of extinction may have profound influence on the biogeographical history of Thuja.


2019 ◽  
Author(s):  
Kole F. Adelalu ◽  
Xu Zhang ◽  
Xiaojian Qu ◽  
Jacob B. Landis ◽  
Yanxia Sun ◽  
...  

Abstract Background: Investigating the biogeographical disjunction of East Asia and North America flora is the key to understanding the formation and dynamic biodiversity in the Northern Hemisphere. The small Cupressaceae genus Thuja, comprising five species, exhibits a typical disjunct distribution in East Asia and North America. Owing to the obscure relationships, the biogeographical history of the genus remains controversial. Here, complete plastomes were employed to investigate the plastome evolution, phylogenetic relationships and biogeographic history of Thuja. Results: All plastomes of Thuja share the same gene contents arranged in the same order. The loss of an IR was evident in all Thuja plastomes, and the B-arrangement as previously recognized was detected. Phylogenomic analyses resolved two sister pairs, T. standishii-T. koraiensis and T. occidentalis-T. sutchuenensis, with T. plicata sister to T. occidentails-T. sutchuenensis. Molecular dating and biogeographic result suggest the diversification of Thuja occurred in the Middle Miocene, and the ancestral area of extant species was located in northern East Asia. Incorporating the fossil record, we inferred that Thuja likely originated from the high-latitude areas of North America in the Paleocene with a second diversification center in northern East Asia. Conclusions: The dispersal events attributed to the Bering Land Bridge in the Miocene and subsequent vicariance events accompanying climate cooling may have shaped the current geographic distributions of Thuja. Given most lineages of gymnosperm, including Thuja, have encountered massive extinction resulted from climatic oscillations, we here advocate that the potential effect of extinction should be re-evaluated in exploring the evolutionary history of gymnosperms.


2016 ◽  
Vol 3 (1-2) ◽  
pp. 79-96 ◽  
Author(s):  
Gunwoo Yoon ◽  
Patrick T. Vargas

In the present research we argue that avatars, as identity containers, can mirror people’s self-concepts. Research in cultural psychology suggests that East Asians tend to be more tolerant of contradictions and that they more easily adjust their self-concepts in accordance with changing contexts compared to North Americans (see Heine 2001). We therefore assume that preferred forms of avatars among East Asians and North Americans are different because of this self-concept variability across cultures. We conducted a quasi-experiment to explore how people in the two cultures differently evaluate two forms of avatars, human-like and cartoon-like avatars, in terms of likeability and preference. We found that East Asians rated cartoon-like avatars more favourably than North Americans. Moreover, compared to North Americans, East Asians preferred cartoon-like avatars to human-like avatars for their hypothetical avatars to play games. We conclude by discussing implications for future research.


2018 ◽  
Author(s):  
Jiani Tan ◽  
Joshua S. Fu ◽  
Frank Dentener ◽  
Jian Sun ◽  
Louisa Emmons ◽  
...  

Abstract. This study uses multi-model ensemble results of 11 models from the 2nd phase of Task Force Hemispheric Transport of Air Pollution (HTAP II) to calculate the global sulfur (S) and nitrogen (N) deposition in 2010. Modelled wet deposition is evaluated with observation networks in North America, Europe and Asia. The modelled results agree well with observations, with 76–83 % of stations having predicted within ±50 % of observations. The results underestimate SO42−, NO3− and NH4+ wet depositions in some European and East Asian stations, but overestimate NO3− wet deposition in Eastern United States. Inter-comparison with previous projects (PhotoComp, ACCMIP and HTAP I) shows HTPA II has considerably improved the estimation of deposition at European and East Asian stations. Modelled dry deposition is generally higher than the “inferential” data calculated by observed concentration and modelled velocity in North America, but the inferential data has high uncertainty, too. The global S deposition is 84 Tg(S) in 2010, with 49 % of the deposits on continental regions and 51 % on ocean (19 % on coastal). The global N deposition consists of 59 Tg(N) oxidized nitrogen (NOy) deposition and 64 Tg(N) reduced nitrogen (NHx) deposition in 2010. 65 % of N is deposited on the continental regions and 35 % is on ocean (15 % on coastal). The estimated outflow of pollution from land to ocean is about 4 Tg(S) for S deposition and 18 Tg(N) for N deposition. Compared our results to the results in 2001 from HTAP I, we find that the global distributions of S and N depositions have changed considerably during the last 10 years. The global S deposition decreases 2 Tg(S) (3 %) from 2001 to 2010, with significant decreases in Europe (5 Tg(S) and 55 %), North America (3 Tg(S) and 29 %) and Russia (2 Tg(S) and 26 %), and increases in South Asia (2 Tg(S) and 42 %) and the Middle East (1 Tg(S) and 44% ). The global N deposition increases by 7 Tg(N) (6 %), mainly contributed by South Asia (5 Tg(N) and 39 %), East Asia (4 Tg(N) and 21 %) and Southeast Asia (2 Tg(N) and 21 %). The NHx deposition is increased with no control policy on NH3 emission in North America. On the other hand, NOy deposition starts to dominate in East Asia (especially China) due to boosted NOx emission in recent years.


Phytotaxa ◽  
2018 ◽  
Vol 336 (1) ◽  
pp. 43 ◽  
Author(s):  
MILAN C. SAMARAKOON ◽  
YUSUFJON GAFFOROV ◽  
NINGGUO LIU ◽  
SAJEEWA S. N. MAHARACHCHIKUMBURA ◽  
JAYARAMA D. BHAT ◽  
...  

The genus Coniochaeta is an important ascomycete because its members live in diversified habitats and nutritional modes. In this study, two new species, C. acaciae and C. coluteae, are introduced from dead branches of Acacia sp. and Colutea paulsenii Freyn (both Fabaceae) respectively from Uzbekistan, based on morphological and phylogenetic studies. Analyses of combined ITS and LSU sequence data with Genealogical Concordance Phylogenetic Species Recognition (GCPSR) and comparison of similar taxa, provide evidences for placement of these new species in Coniochaeta, as distinct lineages.


2021 ◽  
Vol 14 (11) ◽  
pp. 7021-7046
Author(s):  
Yao Ge ◽  
Mathew R. Heal ◽  
David S. Stevenson ◽  
Peter Wind ◽  
Massimo Vieno

Abstract. Atmospheric pollution has many profound effects on human health, ecosystems, and the climate. Of concern are high concentrations and deposition of reactive nitrogen (Nr) species, especially of reduced N (gaseous NH3, particulate NH4+). Atmospheric chemistry and transport models (ACTMs) are crucial to understanding sources and impacts of Nr chemistry and its potential mitigation. Here we undertake the first evaluation of the global version of the EMEP MSC-W ACTM driven by WRF meteorology (1∘×1∘ resolution), with a focus on surface concentrations and wet deposition of N and S species relevant to investigation of atmospheric Nr and secondary inorganic aerosol (SIA). The model–measurement comparison is conducted both spatially and temporally, covering 10 monitoring networks worldwide. Model simulations for 2010 compared use of both HTAP and ECLIPSEE (ECLIPSE annual total with EDGAR monthly profile) emissions inventories; those for 2015 used ECLIPSEE only. Simulations of primary pollutants are somewhat sensitive to the choice of inventory in places where regional differences in primary emissions between the two inventories are apparent (e.g. China) but are much less sensitive for secondary components. For example, the difference in modelled global annual mean surface NH3 concentration using the two 2010 inventories is 18 % (HTAP: 0.26 µg m−3; ECLIPSEE: 0.31 µg m−3) but is only 3.5 % for NH4+ (HTAP: 0.316 µg m−3; ECLIPSEE: 0.305 µg m−3). Comparisons of 2010 and 2015 surface concentrations between the model and measurements demonstrate that the model captures the overall spatial and seasonal variations well for the major inorganic pollutants NH3, NO2, SO2, HNO3, NH4+, NO3-, and SO42- and their wet deposition in East Asia, Southeast Asia, Europe, and North America. The model shows better correlations with annual average measurements for networks in Southeast Asia (mean R for seven species: R7‾=0.73), Europe (R7‾=0.67), and North America (R7‾=0.63) than in East Asia (R5‾=0.35) (data for 2015), which suggests potential issues with the measurements in the latter network. Temporally, both model and measurements agree on higher NH3 concentrations in spring and summer and lower concentrations in winter. The model slightly underestimates annual total precipitation measurements (by 13 %–45 %) but agrees well with the spatial variations in precipitation in all four world regions (0.65–0.94 R range). High correlations between measured and modelled NH4+ precipitation concentrations are also observed in all regions except East Asia. For annual total wet deposition of reduced N, the greatest consistency is in North America (0.75–0.82 R range), followed by Southeast Asia (R=0.68) and Europe (R=0.61). Model–measurement bias varies between species in different networks; for example, bias for NH4+ and NO3- is largest in Europe and North America and smallest in East Asia and Southeast Asia. The greater uniformity in spatial correlations than in biases suggests that the major driver of model–measurement discrepancies (aside from differing spatial representativeness and uncertainties and biases in measurements) are shortcomings in absolute emissions rather than in modelling the atmospheric processes. The comprehensive evaluations presented in this study support the application of this model framework for global analysis of current and potential future budgets and deposition of Nr and SIA.


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