scholarly journals Panicle-3D: Efficient Phenotyping Tool for Precise Semantic Segmentation of Rice Panicle Point Cloud

2021 ◽  
Vol 2021 ◽  
pp. 1-9
Author(s):  
Liang Gong ◽  
Xiaofeng Du ◽  
Kai Zhu ◽  
Ke Lin ◽  
Qiaojun Lou ◽  
...  

The automated measurement of crop phenotypic parameters is of great significance to the quantitative study of crop growth. The segmentation and classification of crop point cloud help to realize the automation of crop phenotypic parameter measurement. At present, crop spike-shaped point cloud segmentation has problems such as fewer samples, uneven distribution of point clouds, occlusion of stem and spike, disorderly arrangement of point clouds, and lack of targeted network models. The traditional clustering method can realize the segmentation of the plant organ point cloud with relatively independent spatial location, but the accuracy is not acceptable. This paper first builds a desktop-level point cloud scanning apparatus based on a structured-light projection module to facilitate the point cloud acquisition process. Then, the rice ear point cloud was collected, and the rice ear point cloud data set was made. In addition, data argumentation is used to improve sample utilization efficiency and training accuracy. Finally, a 3D point cloud convolutional neural network model called Panicle-3D was designed to achieve better segmentation accuracy. Specifically, the design of Panicle-3D is aimed at the multiscale characteristics of plant organs, combined with the structure of PointConv and long and short jumps, which accelerates the convergence speed of the network and reduces the loss of features in the process of point cloud downsampling. After comparison experiments, the segmentation accuracy of Panicle-3D reaches 93.4%, which is higher than PointNet. Panicle-3D is suitable for other similar crop point cloud segmentation tasks.

2021 ◽  
Vol 13 (5) ◽  
pp. 1003
Author(s):  
Nan Luo ◽  
Hongquan Yu ◽  
Zhenfeng Huo ◽  
Jinhui Liu ◽  
Quan Wang ◽  
...  

Semantic segmentation of the sensed point cloud data plays a significant role in scene understanding and reconstruction, robot navigation, etc. This work presents a Graph Convolutional Network integrating K-Nearest Neighbor searching (KNN) and Vector of Locally Aggregated Descriptors (VLAD). KNN searching is utilized to construct the topological graph of each point and its neighbors. Then, we perform convolution on the edges of constructed graph to extract representative local features by multiple Multilayer Perceptions (MLPs). Afterwards, a trainable VLAD layer, NetVLAD, is embedded in the feature encoder to aggregate the local and global contextual features. The designed feature encoder is repeated for multiple times, and the extracted features are concatenated in a jump-connection style to strengthen the distinctiveness of features and thereby improve the segmentation. Experimental results on two datasets show that the proposed work settles the shortcoming of insufficient local feature extraction and promotes the accuracy (mIoU 60.9% and oAcc 87.4% for S3DIS) of semantic segmentation comparing to existing models.


2019 ◽  
Vol 8 (5) ◽  
pp. 213 ◽  
Author(s):  
Florent Poux ◽  
Roland Billen

Automation in point cloud data processing is central in knowledge discovery within decision-making systems. The definition of relevant features is often key for segmentation and classification, with automated workflows presenting the main challenges. In this paper, we propose a voxel-based feature engineering that better characterize point clusters and provide strong support to supervised or unsupervised classification. We provide different feature generalization levels to permit interoperable frameworks. First, we recommend a shape-based feature set (SF1) that only leverages the raw X, Y, Z attributes of any point cloud. Afterwards, we derive relationship and topology between voxel entities to obtain a three-dimensional (3D) structural connectivity feature set (SF2). Finally, we provide a knowledge-based decision tree to permit infrastructure-related classification. We study SF1/SF2 synergy on a new semantic segmentation framework for the constitution of a higher semantic representation of point clouds in relevant clusters. Finally, we benchmark the approach against novel and best-performing deep-learning methods while using the full S3DIS dataset. We highlight good performances, easy-integration, and high F1-score (> 85%) for planar-dominant classes that are comparable to state-of-the-art deep learning.


2021 ◽  
Vol 13 (16) ◽  
pp. 3140
Author(s):  
Liman Liu ◽  
Jinjin Yu ◽  
Longyu Tan ◽  
Wanjuan Su ◽  
Lin Zhao ◽  
...  

In order to deal with the problem that some existing semantic segmentation networks for 3D point clouds generally have poor performance on small objects, a Spatial Eight-Quadrant Kernel Convolution (SEQKC) algorithm is proposed to enhance the ability of the network for extracting fine-grained features from 3D point clouds. As a result, the semantic segmentation accuracy of small objects in indoor scenes can be improved. To be specific, in the spherical space of the point cloud neighborhoods, a kernel point with attached weights is constructed in each octant, the distances between the kernel point and the points in its neighborhood are calculated, and the distance and the kernel points’ weights are used together to weight the point cloud features in the neighborhood space. In this case, the relationship between points are modeled, so that the local fine-grained features of the point clouds can be extracted by the SEQKC. Based on the SEQKC, we design a downsampling module for point clouds, and embed it into classical semantic segmentation networks (PointNet++, PointSIFT and PointConv) for semantic segmentation. Experimental results on benchmark dataset ScanNet V2 show that SEQKC-based PointNet++, PointSIFT and PointConv outperform the original networks about 1.35–2.12% in terms of MIoU, and they effectively improve the semantic segmentation performance of the networks for small objects of indoor scenes, e.g., the segmentation accuracy of small object “picture” is improved from 0.70% of PointNet++ to 10.37% of SEQKC-PointNet++.


Author(s):  
M. Bassier ◽  
M. Bonduel ◽  
B. Van Genechten ◽  
M. Vergauwen

Point cloud segmentation is a crucial step in scene understanding and interpretation. The goal is to decompose the initial data into sets of workable clusters with similar properties. Additionally, it is a key aspect in the automated procedure from point cloud data to BIM. Current approaches typically only segment a single type of primitive such as planes or cylinders. Also, current algorithms suffer from oversegmenting the data and are often sensor or scene dependent.<br><br> In this work, a method is presented to automatically segment large unstructured point clouds of buildings. More specifically, the segmentation is formulated as a graph optimisation problem. First, the data is oversegmented with a greedy octree-based region growing method. The growing is conditioned on the segmentation of planes as well as smooth surfaces. Next, the candidate clusters are represented by a Conditional Random Field after which the most likely configuration of candidate clusters is computed given a set of local and contextual features. The experiments prove that the used method is a fast and reliable framework for unstructured point cloud segmentation. Processing speeds up to 40,000 points per second are recorded for the region growing. Additionally, the recall and precision of the graph clustering is approximately 80%. Overall, nearly 22% of oversegmentation is reduced by clustering the data. These clusters will be classified and used as a basis for the reconstruction of BIM models.


2020 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Siyuan Huang ◽  
Limin Liu ◽  
Jian Dong ◽  
Xiongjun Fu ◽  
Leilei Jia

Purpose Most of the existing ground filtering algorithms are based on the Cartesian coordinate system, which is not compatible with the working principle of mobile light detection and ranging and difficult to obtain good filtering accuracy. The purpose of this paper is to improve the accuracy of ground filtering by making full use of the order information between the point and the point in the spherical coordinate. Design/methodology/approach First, the cloth simulation (CS) algorithm is modified into a sorting algorithm for scattered point clouds to obtain the adjacent relationship of the point clouds and to generate a matrix containing the adjacent information of the point cloud. Then, according to the adjacent information of the points, a projection distance comparison and local slope analysis are simultaneously performed. These results are integrated to process the point cloud details further and the algorithm is finally used to filter a point cloud in a scene from the KITTI data set. Findings The results show that the accuracy of KITTI point cloud sorting is 96.3% and the kappa coefficient of the ground filtering result is 0.7978. Compared with other algorithms applied to the same scene, the proposed algorithm has higher processing accuracy. Research limitations/implications Steps of the algorithm are parallel computing, which saves time owing to the small amount of computation. In addition, the generality of the algorithm is improved and it could be used for different data sets from urban streets. However, due to the lack of point clouds from the field environment with labeled ground points, the filtering result of this algorithm in the field environment needs further study. Originality/value In this study, the point cloud neighboring information was obtained by a modified CS algorithm. The ground filtering algorithm distinguish ground points and off-ground points according to the flatness, continuity and minimality of ground points in point cloud data. In addition, it has little effect on the algorithm results if thresholds were changed.


2021 ◽  
Vol 8 (2) ◽  
pp. 303-315
Author(s):  
Jingyu Gong ◽  
Zhou Ye ◽  
Lizhuang Ma

AbstractA significant performance boost has been achieved in point cloud semantic segmentation by utilization of the encoder-decoder architecture and novel convolution operations for point clouds. However, co-occurrence relationships within a local region which can directly influence segmentation results are usually ignored by current works. In this paper, we propose a neighborhood co-occurrence matrix (NCM) to model local co-occurrence relationships in a point cloud. We generate target NCM and prediction NCM from semantic labels and a prediction map respectively. Then, Kullback-Leibler (KL) divergence is used to maximize the similarity between the target and prediction NCMs to learn the co-occurrence relationship. Moreover, for large scenes where the NCMs for a sampled point cloud and the whole scene differ greatly, we introduce a reverse form of KL divergence which can better handle the difference to supervise the prediction NCMs. We integrate our method into an existing backbone and conduct comprehensive experiments on three datasets: Semantic3D for outdoor space segmentation, and S3DIS and ScanNet v2 for indoor scene segmentation. Results indicate that our method can significantly improve upon the backbone and outperform many leading competitors.


2021 ◽  
Vol 2074 (1) ◽  
pp. 012026
Author(s):  
Renpeng Liu ◽  
Lisheng Ren ◽  
Fang Wang

Abstract Semantic segmentation of single tree 3D point cloud is one of the key technologies in building tree model. It plays an important role in tree skeleton extraction, tree pruning, tree model reconstruction and other fields. Because the area of a single leaf is smaller than that of the whole tree, the segmentation of branches and leaves is a challenging problem. In view of the above problems, this paper first migrates PointNet to the tree branch and leaf point cloud segmentation, and proposes an automatic segmentation method based on improved PointNet. According to the difference of normal direction between leaves and branches, the point cloud information of three dimensions coordinates, color and normal vector is input into the point feature space. In data processing, increase the number of each block data, so that the network can better learn features. MLP is added to the original PointNet network to improve the ability of extracting and learning local features. In addition, in the process of feature extraction, jump connection is added to realize feature reuse and make full use of different levels of features. The original 1×1 filter of PointNet is replaced by 3×1 filter to improve the segmentation accuracy of tree point cloud. The focus loss function focal loss is introduced into the field of 3D point cloud to reduce the impact of the imbalance of point cloud samples on the results. The results show that the improved method improves the accuracy of tree branch point cloud segmentation compared with the original PointNet for branch and leaf segmentation. The segmentation accuracy of structural elements of branches and leaves is more than 88%, and MIoU is 48%.


Author(s):  
P. Wang ◽  
W. Yao

Abstract. Competitive point cloud semantic segmentation results usually rely on a large amount of labeled data. However, data annotation is a time-consuming and labor-intensive task, particularly for three-dimensional point cloud data. Thus, obtaining accurate results with limited ground truth as training data is considerably important. As a simple and effective method, pseudo labels can use information from unlabeled data for training neural networks. In this study, we propose a pseudo-label-assisted point cloud segmentation method with very few sparsely sampled labels that are normally randomly selected for each class. An adaptive thresholding strategy was proposed to generate a pseudo-label based on the prediction probability. Pseudo-label learning is an iterative process, and pseudo labels were updated solely on ground-truth weak labels as the model converged to improve the training efficiency. Experiments using the ISPRS 3D sematic labeling benchmark dataset indicated that our proposed method achieved an equally competitive result compared to that using a full supervision scheme with only up to 2‰ of labeled points from the original training set, with an overall accuracy of 83.7% and an average F1 score of 70.2%.


Author(s):  
Y. A. Lumban-Gaol ◽  
Z. Chen ◽  
M. Smit ◽  
X. Li ◽  
M. A. Erbaşu ◽  
...  

Abstract. Point cloud data have rich semantic representations and can benefit various applications towards a digital twin. However, they are unordered and anisotropically distributed, thus being unsuitable for a typical Convolutional Neural Networks (CNN) to handle. With the advance of deep learning, several neural networks claim to have solved the point cloud semantic segmentation problem. This paper evaluates three different neural networks for semantic segmentation of point clouds, namely PointNet++, PointCNN and DGCNN. A public indoor scene of the Amersfoort railway station is used as the study area. Unlike the typical indoor scenes and even more from the ubiquitous outdoor ones in currently available datasets, the station consists of objects such as the entrance gates, ticket machines, couches, and garbage cans. For the experiment, we use subsets from the data, remove the noise, evaluate the performance of the selected neural networks. The results indicate an overall accuracy of more than 90% for all the networks but vary in terms of mean class accuracy and mean Intersection over Union (IoU). The misclassification mainly occurs in the classes of couch and garbage can. Several factors that may contribute to the errors are analyzed, such as the quality of the data and the proportion of the number of points per class. The adaptability of the networks is also heavily dependent on the training location: the overall characteristics of the train station make a trained network for one location less suitable for another.


2019 ◽  
Vol 9 (10) ◽  
pp. 2130 ◽  
Author(s):  
Kun Zhang ◽  
Shiquan Qiao ◽  
Xiaohong Wang ◽  
Yongtao Yang ◽  
Yongqiang Zhang

With the development of 3D scanning technology, a huge volume of point cloud data has been collected at a lower cost. The huge data set is the main burden during the data processing of point clouds, so point cloud simplification is critical. The main aim of point cloud simplification is to reduce data volume while preserving the data features. Therefore, this paper provides a new method for point cloud simplification, named FPPS (feature-preserved point cloud simplification). In FPPS, point cloud simplification entropy is defined, which quantifies features hidden in point clouds. According to simplification entropy, the key points including the majority of the geometric features are selected. Then, based on the natural quadric shape, we introduce a point cloud matching model (PCMM), by which the simplification rules are set. Additionally, the similarity between PCMM and the neighbors of the key points is measured by the shape operator. This represents the criteria for the adaptive simplification parameters in FPPS. Finally, the experiment verifies the feasibility of FPPS and compares FPPS with other four-point cloud simplification algorithms. The results show that FPPS is superior to other simplification algorithms. In addition, FPPS can partially recognize noise.


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