scholarly journals Genetic functional potential displays minor importance in explaining spatial variability of methane fluxes within a Eriophorum vaginatum dominated Swedish peatland

2022 ◽  
Author(s):  
Joel Dawson White ◽  
Lena Ström ◽  
Veiko Lehsten ◽  
Janne Rinne ◽  
Dag Ahrén
Keyword(s):  
Spatial Variability ◽  
Microbial Communities ◽  
Growing Season ◽  
Future Climate ◽  
Minor Importance ◽  
Type I ◽  
Eriophorum Vaginatum ◽  
Ch4 Emission ◽  
Climate Scenarios ◽  
Functional Potential

Abstract. Microbial communities of methane (CH4) producing methanogens and consuming methanotrophs play an important role for Earth's atmospheric CH4 budget. Despite their global significance, knowledge on how much they control the spatial variation in CH4 fluxes from peatlands is poorly understood. We studied variation in CH4 producing and consuming communities in a natural peatland dominated by Eriophorum vaginatum, via a metagenomics approach using custom designed hybridization-based oligonucleotide probes to focus on taxa and functions associated with methane cycling. We hypothesized that sites with different magnitudes of methane flux are occupied by structurally and functionally different microbial communities, despite the dominance of a single vascular plant species. To investigate this, nine plant-peat mesocosms dominated by the sedge Eriophorum vaginatum, with varying vegetation coverage, were collected from a temperate natural wetland and subjected to a simulated growing season. During the simulated growing season, measurements of CH4 emission, carbon dioxide (CO2) exchange and δ13C signature of emitted CH4 were made. Mesocosms 1 through 9 were classified into three categories according to the magnitude of CH4 flux. Gross primary production and ecosystem respiration followed the same pattern as CH4 fluxes, but this trend was not observed in net ecosystem exchange. We observed that genetic functional potential was of minor importance in explaining spatial variability of CH4 fluxes with only small shifts in taxonomic community and functional genes. In addition, a higher β-diversity was observed in samples with high CH4 emission. Among methanogens, Methanoregula, made up over 50 % of the community composition. This, in combination with the remaining hydrogenotrophic methanogens matched the δ13C isotopic signature of emitted CH4. However, the presence of acetoclastic and methylotrophic taxa and type I, II and Verrucomicrobia methanotrophs indicates that the microbial community holds the ability to produce and consume CH4 in multiple ways. This is important in terms of future climate scenarios, where peatlands are expected to alter in nutrient status, hydrology, and peat biochemistry. Due to the high functional potential, we expect the community to be highly adaptive to future climate scenarios.

scholarly journals Microbial Functional Responses Explain Alpine Soil Carbon Fluxes under Future Climate Scenarios

mBio ◽  
2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Qi Qi ◽  
Yue Haowei ◽  
Zhenhua Zhang ◽  
Joy D. Van Nostrand ◽  
Linwei Wu ◽  
...  
Keyword(s):  
Microbial Communities ◽  
Soil Carbon ◽  
Climate Changes ◽  
Gross Primary Production ◽  
Carbon Fluxes ◽  
Future Climate ◽  
The Tibetan Plateau ◽  
Climate Scenarios ◽  
Functional Responses ◽  
Alpine Grasslands

ABSTRACT Soil microorganisms are sensitive to temperature in cold ecosystems, but it remains unclear how microbial responses are modulated by other important climate drivers, such as precipitation changes. Here, we examine the effects of six in situ warming and/or precipitation treatments in alpine grasslands on microbial communities, plants, and soil carbon fluxes. These treatments differentially affected soil carbon fluxes, gross primary production, and microbial communities. Variations of soil CO2 and CH4 fluxes across all sites significantly (r > 0.70, P < 0.050) correlated with relevant microbial functional abundances but not bacterial or fungal abundances. Given tight linkages between microbial functional traits and ecosystem functionality, we conclude that future soil carbon fluxes in alpine grasslands can be predicted by microbial carbon-degrading capacities. IMPORTANCE The warming pace in the Tibetan Plateau, which is predominantly occupied by grassland ecosystems, has been 0.2°C per decade in recent years, dwarfing the rate of global warming by a factor of 2. Many Earth system models project substantial carbon sequestration in Tibet, which has been observed. Here, we analyzed microbial communities under projected climate changes by 2100. As the soil “carbon pump,” the growth and activity of microorganisms can largely influence soil carbon dynamics. However, microbial gene response to future climate scenarios is still obscure. We showed that the abundances of microbial functional genes, but not microbial taxonomy, were correlated with carbon fluxes and ecosystem multifunctionality. By identifying microbial traits linking to ecosystem functioning, our results can guide the assessment of future soil carbon fluxes in alpine grasslands, a critical step toward mitigating climate changes.

Temporal fluctuations of microbial communities within the crop growing season

Geoderma ◽  
2021 ◽  
Vol 391 ◽  
pp. 114951
Author(s):  
Zachery R. Leitner ◽  
Aaron Lee M. Daigh ◽  
Jodi DeJong-Hughes
Keyword(s):  
Microbial Communities ◽  
Growing Season ◽  
Temporal Fluctuations

scholarly journals Dynamics of soil organic carbon in the steppes of Russia and Kazakhstan under past and future climate and land use

2021 ◽  
Vol 21 (3) ◽  
Author(s):  
Susanne Rolinski ◽  
Alexander V. Prishchepov ◽  
Georg Guggenberger ◽  
Norbert Bischoff ◽  
Irina Kurganova ◽  
...  
Keyword(s):  
Climate Change ◽  
Land Use ◽  
Organic Carbon ◽  
Land Use Change ◽  
Soil Organic Carbon ◽  
Arable Land ◽  
Future Climate ◽  
Future Climate Change ◽  
Climate Scenarios ◽  
The Impact

AbstractChanges in land use and climate are the main drivers of change in soil organic matter contents. We investigated the impact of the largest policy-induced land conversion to arable land, the Virgin Lands Campaign (VLC), from 1954 to 1963, of the massive cropland abandonment after 1990 and of climate change on soil organic carbon (SOC) stocks in steppes of Russia and Kazakhstan. We simulated carbon budgets from the pre-VLC period (1900) until 2100 using a dynamic vegetation model to assess the impacts of observed land-use change as well as future climate and land-use change scenarios. The simulations suggest for the entire VLC region (266 million hectares) that the historic cropland expansion resulted in emissions of 1.6⋅ 1015 g (= 1.6 Pg) carbon between 1950 and 1965 compared to 0.6 Pg in a scenario without the expansion. From 1990 to 2100, climate change alone is projected to cause emissions of about 1.8 (± 1.1) Pg carbon. Hypothetical recultivation of the cropland that has been abandoned after the fall of the Soviet Union until 2050 may cause emissions of 3.5 (± 0.9) Pg carbon until 2100, whereas the abandonment of all cropland until 2050 would lead to sequestration of 1.8 (± 1.2) Pg carbon. For the climate scenarios based on SRES (Special Report on Emission Scenarios) emission pathways, SOC declined only moderately for constant land use but substantially with further cropland expansion. The variation of SOC in response to the climate scenarios was smaller than that in response to the land-use scenarios. This suggests that the effects of land-use change on SOC dynamics may become as relevant as those of future climate change in the Eurasian steppes.

scholarly journals Modelling the Northward Expansion of Culicoides sonorensis (Diptera: Ceratopogonidae) under Future Climate Scenarios

PLoS ONE ◽  
2015 ◽  
Vol 10 (8) ◽  
pp. e0130294 ◽  
Author(s):  
Anna Zuliani ◽  
Alessandro Massolo ◽  
Timothy Lysyk ◽  
Gregory Johnson ◽  
Shawn Marshall ◽  
...  
Keyword(s):  
Future Climate ◽  
Climate Scenarios ◽  
Culicoides Sonorensis ◽  
Northward Expansion

scholarly journals Vikodak - A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets

PLoS ONE ◽  
2016 ◽  
Vol 11 (2) ◽  
pp. e0148347 ◽  
Author(s):  
Sunil Nagpal ◽  
Mohammed Monzoorul Haque ◽  
Sharmila S. Mande
Keyword(s):  
Microbial Communities ◽  
Functional Potential ◽  
Modular Framework

scholarly journals Future Climate Alters Pathogens-Microbiome Co-occurrence Networks in Wheat Straw Residues during Decomposition

Proceedings ◽  
2021 ◽  
Vol 66 (1) ◽  
pp. 22
Author(s):  
Sara Fareed Mohamed Wahdan ◽  
François Buscot ◽  
Witoon Purahong
Keyword(s):  
Network Analysis ◽  
Microbial Communities ◽  
Wheat Straw ◽  
Pathogenic Fungi ◽  
Future Climate ◽  
Plant Residues ◽  
Plant Pathogenic Fungi ◽  
Plant Growth Promoting Bacteria ◽  
Ambient Conditions ◽  
Ecological Functions

The return of plant residues to the ground is used to promote soil carbon sequestration, improve soil structure, reduce evaporation, and help to fix additional carbon dioxide in the soil. The microbial communities with diverse ecological functions that colonize plant residues during decomposition are expected to be highly dynamic. We aimed to characterize microbial communities colonizing wheat straw residues and their ecological functions during the early phase of straw decomposition. The experiment, run in Central Germany, was conducted in a conventional farming system under both ambient conditions and a future climate scenario expected in 50–70 years from now. We used MiSeq illumina sequencing and network analysis of bacterial 16S rRNA and fungal ITS genes. Our results show that future climate alters the dynamics of bacterial and fungal communities during decomposition. We detected various microbial ecological functions within wheat straw residues such as plant growth-promoting bacteria, N-fixing bacteria, saprotrophs, and plant pathogenic fungi. Interestingly, plant pathogenic fungi dominated (~87% of the total sequences) within the wheat residue mycobiome under both ambient and future climate conditions. Therefore, we applied co-occurrence network analysis to predict the potential impacts of climate change on the interaction between pathogenic community and other bacterial and fungal microbiomes. The network under ambient climate consisted of 91 nodes and 129 correlations (edges). The highest numbers of connections were detected for the pathogens Mycosphaerella tassiana and Neosetophoma rosigena. The network under future climate consisted of 100 nodes and 170 correlations. The highest numbers of connections were detected for the pathogens Pseudopithomyces rosae and Gibellulopsis piscis. We conclude that the future climate significantly changes the interactions between plant pathogenic fungi and other microorganisms during the early phrase of decomposition.

scholarly journals Interannual Variation in Root Production in Grasslands Affected by Artificially Modified Amount of Rainfall

2012 ◽  
Vol 2012 ◽  
pp. 1-10 ◽  
Author(s):  
Karel Fiala ◽  
Ivan Tůma ◽  
Petr Holub
Keyword(s):  
Interannual Variation ◽  
Plant Biomass ◽  
Growing Season ◽  
Lower Amount ◽  
Root Production ◽  
Climate Scenarios ◽  
Natural Rainfall ◽  
Plant Matter ◽  
Grassland Ecosystems ◽  
Below Ground

The effect of different amounts of rainfall on the below-ground plant biomass was studied in three grassland ecosystems. Responses of the lowland (dryFestucagrassland), highland (wetCirsiumgrassland), and mountain (Nardusgrassland) grasslands were studied during five years (2006–2010). A field experiment based on rainout shelters and gravity irrigation simulated three climate scenarios: rainfall reduced by 50% (dry), rainfall increased by 50% (wet), and the natural rainfall of the current growing season (ambient). The interannual variation in root increment and total below-ground biomass reflected the experimentally manipulated amount of precipitation and also the amount of current rainfall of individual years. The effect of year on these below-ground parameters was found significant in all studied grasslands. In comparison with dryFestucagrassland, better adapted to drought, submontane wetCirsiumgrassland was more sensitive to the different water inputs forming rather lower amount of below-ground plant matter at reduced precipitation.

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