scholarly journals KNOWLEDGE GRAPH CONSTRUCTION FOR SUBSURFACE OBJECTS INCLUDING UNCERTAINTY AND TIME VARIATION

Author(s):  
A. Caselli ◽  
G. Falquet ◽  
C. Métral

Abstract. In the recent years the concept of knowledge graph has emerged as a way to aggregate information from various sources without imposing too strict data modelling constraints. Several graph models have been proposed during the years, ranging from the “standard” RDF to more expressive ones, such as Neo4J and RDF-star. The adoption of knowledge graph has become established in several domains. It is for instance the case of the 3D geoinformation domain, where the adoption of semantic web technologies has led to several works in data integration and publishing. However, yet there is not a well-defined model or technique to represent 3D geoinformation including uncertainty and time variation in knowledge graphs. In this paper we propose a model to represent parameterized geometries of subsurface objects. The vocabulary of the model has been defined as an OWL ontology and it extends existing ontologies by adding classes and properties to represent the uncertainty and the spatio-temporal behaviour of a geometry, as well as additional attributes, such as the data provenance. The model has been validated on significant use cases showing different types of uncertainties on 3D subsurface objects. A possible implementation is also presented, using RDF-star for the data representation.

2020 ◽  
Vol 37 (1) ◽  
pp. 175-178
Author(s):  
Víctor Rodríguez Doncel ◽  
Elena Montiel Ponsoda

Lynx is an innovation project in Europe whose objective is to develop services for legal compliance. A legal knowledge graph is built over multilingual, multijurisdictional documents using semantic web technologies. A collection of services implementing natural language techniques enables better legal information retrieval, cross-lingual answering of questions and information discovery. Three use cases are discussed, as well as the overall impact of the project.  


Informatica ◽  
2015 ◽  
Vol 26 (2) ◽  
pp. 221-240 ◽  
Author(s):  
Valentina Dagienė ◽  
Daina Gudonienė ◽  
Renata Burbaitė

Metabolites ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 48
Author(s):  
Marc Feuermann ◽  
Emmanuel Boutet ◽  
Anne Morgat ◽  
Kristian Axelsen ◽  
Parit Bansal ◽  
...  

The UniProt Knowledgebase UniProtKB is a comprehensive, high-quality, and freely accessible resource of protein sequences and functional annotation that covers genomes and proteomes from tens of thousands of taxa, including a broad range of plants and microorganisms producing natural products of medical, nutritional, and agronomical interest. Here we describe work that enhances the utility of UniProtKB as a support for both the study of natural products and for their discovery. The foundation of this work is an improved representation of natural product metabolism in UniProtKB using Rhea, an expert-curated knowledgebase of biochemical reactions, that is built on the ChEBI (Chemical Entities of Biological Interest) ontology of small molecules. Knowledge of natural products and precursors is captured in ChEBI, enzyme-catalyzed reactions in Rhea, and enzymes in UniProtKB/Swiss-Prot, thereby linking chemical structure data directly to protein knowledge. We provide a practical demonstration of how users can search UniProtKB for protein knowledge relevant to natural products through interactive or programmatic queries using metabolite names and synonyms, chemical identifiers, chemical classes, and chemical structures and show how to federate UniProtKB with other data and knowledge resources and tools using semantic web technologies such as RDF and SPARQL. All UniProtKB data are freely available for download in a broad range of formats for users to further mine or exploit as an annotation source, to enrich other natural product datasets and databases.


2006 ◽  
Vol 21 (1) ◽  
pp. 82-86 ◽  
Author(s):  
S. Stephens ◽  
A. Morales ◽  
M. Quinlan

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