Elucidating the Beta-Diversity of the Microbiome: from Global Alignment to Local Alignment

Quantitative comparison among microbiomes can link microbial beta-diversity to environmental features, thus enabling prediction of ecosystem properties or dissection of host-microbiome interaction. However, to compute beta-diversity, current methods mainly employ the entire community profiles of taxa or functions, which can miss the subtle differences caused by low-abundance community members that may play crucial roles in the properties of interest.

Digging into the roots: understanding direct and indirect drivers of ecosystem service trade-offs in coastal grasslands via plant functional traits

Recent empirical and theoretical approaches have called for an understanding of the processes underpinning ecosystem service provision. Environmental gradients have shown effects on key plant functional traits that subsequently explain ecosystem properties of several systems. However, little is known concerning how associations between plant functional traits, including both below- and aboveground plant components, predict ecosystem properties and independently measured final ecosystem services. Here, we modeled (1) the responses of the leaf and plant economics spectrum, Plant size axis, and root growth to environmental gradients and (2) how associations between plant functional traits explain trade-offs and synergies between multiple ecosystem properties and final services. Forty-four plots were studied in a coastal marsh landscape of the German North Sea Coast. We used a partial least square structural equation model approach to test the hypothesized model. We found (1) a negative covariation between plant traits pertaining to a size axis and traits explaining both plant growth (roots and stems) and the leaf economics spectrum; (2) this trade-off responded significantly to the land use gradient and nutrient availability, which were both strongly driven by the groundwater gradient; (3) this trade-off explained an initial major trade-off between carbon stocks, at one extreme of the axis, and both the habitat value to conserve endangered plants and forage production for meat and dairy products at the other extreme. However, a secondary trade-off between nature conservation value and forage production, explained by a trade-off between leaf economics spectrum and plant growth in response to the land use intensity gradient, was also found.

Intraspecific trait variation in plants: a renewed focus on its role in ecological processes

Background Investigating the causes and consequences of intraspecific trait variation (ITV) in plants is not novel, as it has long been recognized that such variation shapes biotic and abiotic interactions. While evolutionary and population biology have extensively investigated ITV, only in the last 10 years has interest in ITV surged within community and comparative ecology. Scope Despite this recent interest, still lacking are thorough descriptions of ITV’s extent, the spatial and temporal structure of ITV, and stronger connections between ITV and community and ecosystem properties. Our primary aim in this review is to synthesize the recent literature and ask: (1) How extensive is intraspecific variation in traits across scales, and what underlying mechanisms drive this variation? (2) How does this variation impact higher-order ecological processes (e.g. population dynamics, community assembly, invasion, ecosystem productivity)? (3) What are the consequences of ignoring ITV and how can these be mitigated? and (4) What are the most pressing research questions, and how can current practices be modified to suit our research needs? Our secondary aim is to target diverse and underrepresented traits and plant organs, including anatomy, wood, roots, hydraulics, reproduction and secondary chemistry. In addressing these aims, we showcase papers from the Special Issue. Conclusions Plant ITV plays a key role in determining individual and population performance, species interactions, community structure and assembly, and ecosystem properties. Its extent varies widely across species, traits and environments, and it remains difficult to develop a predictive model for ITV that is broadly applicable. Systematically characterizing the sources (e.g. ontogeny, population differences) of ITV will be a vital step forward towards identifying generalities and the underlying mechanisms that shape ITV. While the use of species means to link traits to higher-order processes may be appropriate in many cases, such approaches can obscure potentially meaningful variation. We urge the reporting of individual replicates and population means in online data repositories, a greater consideration of the mechanisms that enhance and constrain ITV’s extent, and studies that span sub-disciplines.