Try or Die: Dynamics of Plant Respiration and How to Survive Low Oxygen Conditions

Fluctuations in oxygen (O2) availability occur as a result of flooding, which is periodically encountered by terrestrial plants. Plant respiration and mitochondrial energy generation rely on O2 availability. Therefore, decreased O2 concentrations severely affect mitochondrial function. Low O2 concentrations (hypoxia) induce cellular stress due to decreased ATP production, depletion of energy reserves and accumulation of metabolic intermediates. In addition, the transition from low to high O2 in combination with light changes—as experienced during re-oxygenation—leads to the excess formation of reactive oxygen species (ROS). In this review, we will update our current knowledge about the mechanisms enabling plants to adapt to low-O2 environments, and how to survive re-oxygenation. New insights into the role of mitochondrial retrograde signaling, chromatin modification, as well as moonlighting proteins and mitochondrial alternative electron transport pathways (and their contribution to low O2 tolerance and survival of re-oxygenation), are presented.

Tuning of Composition and Morphology of LiFePO4 Cathode for Applications in All Solid-State Lithium Metal Batteries

All solid-state rechargeable lithium metal batteries (SS-LMBs) are gaining more and more importance because of their higher safety and higher energy densities in comparison to their liquid-based counterparts. In spite of this potential, their low discharge capacities and poor rate performances limit them to be used as state-of-the-art SS-LMBs. This arise due to the low intrinsic ionic and electronic transport pathways within the solid components in the cathode during the fast charge/discharge processes. Therefore, it is necessary to have a cathode with good electron conducting channels to increase the active material utilization without blocking the movement of lithium ions. Since SS-LMBs require a different morphology and composition of the cathode, we selected LiFePO4 (LFP) as a prototype and, we have systematically studied the influence of the cathode composition by varying the contents of active material LFP, conductive additives (super C65 conductive carbon black and conductive graphite), ion conducting components (PEO and LiTFSI) in order to elucidate the best ion as well as electron conduction morphology in the cathode. In addition, a comparative study on different cathode slurry preparation methods was made, wherein ball milling was found to reduce the particle size and increase the homogeneity of LFP which further aids fast Li ion transport throughout the electrode. The SEM analysis of the resulting calendered electrode shows the formation of non-porous and crack-free structures with the presence of conductive graphite throughout the electrode. As a result, the optimum LFP cathode composition with solid polymer nanocomposite electrolyte (SPNE) delivered higher initial discharge capacities of 114 mAh g-1 at 0.2C rate at 30 ᴼC and 141 mAh g-1 at 1C rate at 70 ᴼC. When the current rate was increased to 2C, the electrode still delivered high discharge capacity of 82 mAh g-1 even after 500 cycle, which indicates that the optimum cathode formulation is one of the important parameters in building high rate and long cycle performing SS-LMBs.

Environmental Impact of Construction Products on Aquatic Systems—Principles of an Integrated Source–Path–Target Concept

Buildings exposed to water can release undesirable substances which, once transported to environmental compartments, may cause unwanted effects. These exposure pathways need to be investigated and included in risk assessments to safeguard water quality and promote the sustainability of construction materials. The applied materials, exposure conditions, distribution routes and resilience of receiving compartments vary considerably. This demonstrates the need for a consistent concept that integrates knowledge of emission sources, leaching processes, transport pathways, and effects on targets. Such a consistent concept can serve as the basis for environmental risk assessment for several scenarios using experimentally determined emissions. Typically, a source–path–target concept integrates data from standardized leaching tests and models to describe leaching processes, the distribution of substances in the environment and the occurrence of substances at different points of compliance. This article presents an integrated concept for assessing the environmental impact of construction products on aquatic systems and unravels currently existing gaps and necessary actions. This manuscript outlines a source–path–target concept applicable to a large variety of construction products. It is intended to highlight key elements of a holistic evaluation concept that could assist authorities in developing procedures for environmental risk assessments and mitigation measures and identifying knowledge gaps.

Physiology and Pathophysiology of Human Airway Mucus

The mucus clearance system is the dominant mechanical host defense system of the human lung. Mucus is cleared from the lung by cilia and airflow, including both two-phase gas liquid pumping and cough-dependent mechanisms, and mucus transport rates are heavily dependent on mucus concentration. Importantly, mucus transport rates are accurately predicted by the gel-on-brush model of the mucociliary apparatus from the relative osmotic moduli of the mucus and periciliary-glycocalyceal (PCL-G) layers. The fluid available to hydrate mucus is generated by transepithelial fluid transport. Feedback interactions between mucus concentrations and cilia beating, via purinergic signaling, coordinate Na+ absorptive vs Cl- secretory rates to maintain mucus hydration in health. In disease, mucus becomes hyperconcentrated (dehydrated). Multiple mechanisms derange the ion transport pathways that normally hydrate mucus in muco-obstructive lung diseases, e.g., CF, COPD, NCFB, and PCD. A key step in muco-obstructive disease pathogenesis is the osmotic compression of the mucus layer onto the airway surface with the formation of adherent mucus plaques and plugs, particularly in distal airways. Mucus plaques create locally hypoxic conditions and produce airflow obstruction, inflammation, infection, and, ultimately, airway wall damage. Therapies to clear adherent mucus with hydrating and mucolytic agents are rational, and strategies to develop these agents are reviewed.

Specified dynamics scheme impacts on wave-mean flow dynamics, convection, and tracer transport in CESM2 (WACCM6)

Specified dynamics schemes are ubiquitous modeling tools for isolating the roles of dynamics and transport on chemical weather and climate. They typically constrain the circulation of a chemistry–climate model to the circulation in a reanalysis product through linear relaxation. However, recent studies suggest that these schemes create a divergence in chemical climate and the meridional circulation between models and do not accurately reproduce trends in the circulation. In this study we perform a systematic assessment of the specified dynamics scheme in the Community Earth System Model version 2, Whole Atmosphere Community Climate Model version 6 (CESM2 (WACCM6)), which proactively nudges the circulation toward the reference meteorology. Specified dynamics experiments are performed over a wide range of nudging timescales and reference meteorology frequencies, with the model's circulation nudged to its own free-running output – a clean test of the specified dynamics scheme. Errors in the circulation scale robustly and inversely with meteorology frequency and have little dependence on the nudging timescale. However, the circulation strength and errors in tracers, tracer transport, and convective mass flux scale robustly and inversely with the nudging timescale. A 12 to 24 h nudging timescale at the highest possible reference meteorology frequency minimizes errors in tracers, clouds, and the circulation, even up to the practical limit of one reference meteorology update every time step. The residual circulation and eddy mixing integrate tracer errors and accumulate them at the end of their characteristic transport pathways, leading to elevated error in the upper troposphere and lower stratosphere and in the polar stratosphere. Even in the most ideal case, there are non-negligible errors in tracers introduced by the nudging scheme. Future development of more sophisticated nudging schemes may be necessary for further progress.

Shelf Transport Pathways Adjacent to the East Australian Current Reveal Sources of Productivity for Coastal Reefs

The region where the East Australian Current (EAC) separates from the coast is dynamic and the shelf circulation is impacted by the interplay of the western boundary current and its eddy field with the coastal ocean. This interaction can drive upwelling, retention or export. Hence understanding the connection between offshore waters and the inner shelf is needed as it influences the productivity potential of valuable coastal rocky reefs. Near urban centres, artificial reefs enhance fishing opportunities in coastal waters, however these reefs are located without consideration of the productivity potential of adjacent waters. Here we identify three dominant modes of mesoscale circulation in the EAC separation region (~31.5−34.5°S); the ‘EAC mode’ which dominates the flow in the poleward direction, and two eddy modes, the ‘EAC eddy mode’ and the ‘Eddy dipole mode’, which are determined by the configuration of a cyclonic and anticyclonic eddy and the relationship with the separated EAC jet. We use a Lagrangian approach to reveal the transport pathways across the shelf to understand the impact of the mesoscale circulation modes and to explore the productivity potential of the coastal waters. We investigate the origin (position and depth) of the water that arrives at the inner-mid shelf over a 21-day period (the plankton productivity timescale). We show that the proportion of water that is upwelled from below the euphotic zone varies spatially, and with each mesoscale circulation mode. Additionally, shelf transport timescales and pathways are also impacted by the mesoscale circulation. The highest proportion of upwelling (70%) occurs upstream of 32.5°S, associated with the EAC jet separation, with vertical displacements of 70–120 m. From 33 to 33.5°S, water comes from offshore above the euphotic layer, and shelf transport timescales are longest. The region of highest retention over the inner shelf is immediately downstream of the EAC separation region. The position of the EAC jet and the location of the cyclonic eddy determines the variability in shelf-ocean interactions and the productivity of shelf waters. These results are useful for understanding productivity of temperate rocky reefs in general and specifically for fisheries enhancements along an increasingly urbanised coast.

Moisture origin, transport pathways, and driving processes of intense wintertime moisture transport into the Arctic

A substantial portion of the moisture transport into the Arctic occurs in episodic, high-amplitude events with strong impacts on the Arctic's climate system components such as sea ice. This study focuses on the origin of such moist-air intrusions during winter and examines the moisture sources, moisture transport pathways, and their linkage to the driving large-scale circulation patterns. For that purpose, 597 moist-air intrusions, defined as daily events of intense (exceeding the 90th anomaly percentile) zonal mean moisture transport into the polar cap (≥70∘ N), are identified. Kinematic backward trajectories combined with a Lagrangian moisture source diagnostic are then used to pinpoint the moisture sources and characterize the airstreams accomplishing the transport. The moisture source analyses show that the bulk of the moisture transported into the polar cap during these moist-air intrusions originates in the eastern North Atlantic with an uptake maximum poleward of 50∘ N. Trajectories further reveal an inverse relationship between moisture uptake latitude and the level at which moisture is injected into the polar cap, consistent with ascent of poleward-flowing air in a baroclinic atmosphere. Focusing on intrusions in the North Atlantic (424 intrusions), we find that lower tropospheric moisture transport is predominantly accomplished by two types of airstreams: (i) cold, polar air warmed and moistened by surface fluxes and (ii) air subsiding from the mid-troposphere into the boundary layer. Both airstreams contribute about 36 % each to the total transport. The former accounts for most of the moisture transport during intrusions associated with an anomalously high frequency of cyclones east of Greenland (218 intrusions), whereas the latter is more important in the presence of atmospheric blocking over Scandinavia and the Ural Mountains (145 events). Long-range moisture transport, accounting for 17 % of the total transport, dominates during intrusions with weak forcing by baroclinic weather systems (64 intrusions). Finally, mid-tropospheric moisture transport is invariably associated with (diabatically) ascending air and moisture origin in the central and western North Atlantic, including the Gulf Stream front, accounting for roughly 10 % of the total transport. In summary, our study shows that moist-air intrusions into the polar atmosphere result from a combination of airstreams with predominantly high-latitude or high-altitude origin, whose relative importance is determined by the underlying driving weather systems (i.e., cyclones and blocks).

Transcriptomic Analysis Reveals Competitive Growth Advantage of Non-pigmented Serratia marcescens Mutants

Serratia marcescens is a common bacterium well-known for the red secondary metabolite prodigiosin. However, color mutants have long been described. Non-pigmented strains can be found to exist both naturally and under laboratory conditions. It is unclear why S. marcescens loses prodigiosin synthesis capacity in certain conditions. In the present study, we find that the spontaneous color mutants arise within a few generations (about five passages) and rapidly replace the wild-type parent cells (about 24 passages), which indicates a growth advantage of the former. Although, the loss of prodigiosin synthesis genes (pigA-N) is frequently reported as the major reason for pigment deficiency, it was unexpected that the whole gene cluster is completely preserved in the different color morphotypes. Comparative transcriptomic analysis indicates a dramatic variation at the transcriptional level. Most of the pig genes are significantly downregulated in the color morphotypes which directly lead to prodigiosin dyssynthesis. Besides, the transcriptional changes of several other genes have been noticed, of which transcriptional regulators, membrane proteins, and nearly all type VI secretion system (T6SS) components are generally downregulated, while both amino acid metabolite and transport systems are activated. In addition, we delete the transcription regulator slyA to generate a non-pigmented mutant. The ΔslyA strain loses prodigiosin synthesis capacity, but has a higher cell density, and surprisingly enhances the virulence as an entomopathogen. These data indicate that S. marcescens shuts down several high-cost systems and activates the amino acid degradation and transport pathways at the transcriptional level to obtain extra resources, which provides new insights into the competitive growth advantage of bacterial spontaneous color mutants.