Mapping Aquaculture Ponds for the Coastal Zone of Asia with Sentinel-1 and Sentinel-2 Time Series

Asia dominates the world’s aquaculture sector, generating almost 90 percent of its total annual global production. Fish, shrimp, and mollusks are mainly farmed in land-based pond aquaculture systems and serve as a primary protein source for millions of people. The total production and area occupied for pond aquaculture has expanded rapidly in coastal regions in Asia since the early 1990s. The growth of aquaculture was mainly boosted by an increasing demand for fish and seafood from a growing world population. The aquaculture sector generates income and employment, contributes to food security, and has become a billion-dollar industry with high socio-economic value, but has also led to severe environmental degradation. In this regard, geospatial information on aquaculture can support the management of this growing food sector for the sustainable development of coastal ecosystems, resources, and human health. With free and open access to the rapidly growing volume of data from the Copernicus Sentinel missions as well as machine learning algorithms and cloud computing services, we extracted coastal aquaculture at a continental scale. We present a multi-sensor approach that utilizes Earth observation time series data for the mapping of pond aquaculture within the entire Asian coastal zone, defined as the onshore area up to 200 km from the coastline. In this research, we developed an object-based framework to detect and extract aquaculture at a single-pond level based on temporal features derived from high-spatial-resolution SAR and optical satellite data acquired from the Sentinel-1 and Sentinel-2 satellites. In a second step, we performed spatial and statistical data analyses of the Earth-observation-derived aquaculture dataset to investigate spatial distribution and identify production hotspots at various administrative units at regional, national, and sub-national scale.

Environmental Accounting of the Yellow-Tail Lambari Aquaculture: Sustainability of Rural Freshwater Pond Systems

Freshwater pond aquaculture is the prevailing fish culture system worldwide, especially in developing countries. Climate change outcomes and inadequate environmental practices challenge its sustainability. This study applies emergy synthesis to assess the environmental performance of freshwater pond aquaculture in Brazil, aiming to identify and propose practices towards sustainability. As a study model, nine semi-intensive lambari farms operating at three levels of management were evaluated: low (LC), moderate (MC) and high (HC) control. Results showed that the main inputs for LC were services (27-46%), feed (7-39%), and water (15-21%), while for the MC and HC farms, they were feed (35-49% and 17-48%, respectively) and services (33-39% and 26-36%, respectively). All farms required more than 60% of their emergy from purchased inputs, resulting in low emergy sustainability index (ESI = 0.1-0.5). Replacing animal protein and oil on diet composition by vegetal sources, using superficial water instead of springwater, increasing juvenile productivity, and controlling pond fertilization can lead all systems to higher efficiency and resilience, increasing sustainability.

A Review of Ammonia-Oxidizing Archaea and Anaerobic Ammonia-Oxidizing Bacteria in the Aquaculture Pond Environment in China

The excessive ammonia produced in pond aquaculture processes cannot be ignored. In this review, we present the distribution and diversity of ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing bacteria (AnAOB) in the pond environment. Combined with environmental conditions, we analyze the advantages of AOA and AnAOB in aquaculture water treatment and discuss the current situation of pond water treatment engineering involving these microbes. AOA and AnAOB play an important role in the nitrogen removal process of aquaculture pond water, especially in seasonal low temperatures and anoxic sediment layers. Finally, we prospect the application of bioreactors to purify pond aquaculture water using AOA and AnAOB, in autotrophic nitrogen removal, which can reduce the production of greenhouse gases (such as nitrous oxide) and is conducive to the development of environmentally sustainable pond aquaculture.

A high abundance of Firmicutes in the intestine of chinese mitten crabs (Eriocheir sinensis) cultured in an alkaline region

The Chinese mitten crab (Eriocheir sinensis) is a popular aquaculture product in East Asia, especially in China. In the last decade, rice–crab co-culture has rapidly expanded in China. Under this model, crabs are raised in rice fields instead of in traditional aquaculture ponds. In this study, we cultured two varieties of Chinese mitten crabs (Changjiang and Liaohe) in an alkaline region in northwest China and used Illumina MiSeq sequencing to compare the intestinal bacterial alpha diversity and community structure between traditional and co-culture aquaculture models, between two crab varieties, and between female and male crabs. Significant variations in intestinal bacterial communities were found between crab varieties and between female and male crabs but not between aquaculture models. These results show that rice–crab co-culture operations did not obviously impact the crab intestinal bacterial community compared with traditional pond aquaculture. Firmicutes was the most abundant bacterial phylum in the crab intestines (78%, relative abundance). Three dominant operational taxonomic units (OTUs) represented 73.2% of Firmicutes sequences and 56.8% of all sequences. A dominant OTU assigned as Firmicutes that was negatively correlated with crab body length, width, and weight was found in the source water for the experimental area. The results of this study suggest that the aquaculture of Chinese mitten crabs in alkaline regions requires more study to improve cultivation techniques.

Assessment of the Carrying Capacity of Integrated Pond Aquaculture of Portunus trituberculatus at the Ecosystem Level

In recent years, integrated pond aquaculture under controlled management has been crucial in improving the supply of aquatic products and ensuring food security. This study constructed two trophic models of integrated pond aquaculture ecosystems of Portunus trituberculatus–Penaeus japonicus (PP) and P. trituberculatus–P. japonicus–Sinonovacula constricta (PPS) using Ecopath with Ecosim software. The energy flows, ecosystem properties, and carrying capacities of the two ecosystems were analyzed and evaluated. The results showed that the ecotrophic efficiency values in the PP and PPS ecosystems were 0.962 and 0.954 for P. trituberculatus and P. japonicus and 0.952 for S. constricta. The effective trophic levels of P. trituberculatus and P. japonicus were 2.065 and 2.027 in the PP system, and those of P. trituberculatus, P. japonicus, and S. constricta were 2.057, 2.018, and 2.010 in the PPS system. The primary productivities of the PP and PPS ecosystems were 2623.79 and 2781.48 g/m2/240 days, with 2.13 and 37.83% of the energy flowing to trophic level II and 97.87 and 62.17% flowing to the detritus, respectively. The total energy of the detritus group was 2900.89 and 2372.98 g/m2/240 days, with 931.02 and 1505.35 g/m2/240 days flowing to trophic level II, respectively. The total primary production/total respiration ratio of the PPS ecosystem (1.632) was lower than that of the PP ecosystem (4.824), indicating that the former had a greater degree of exploitation. At the current feeding level, the carrying capacities of P. trituberculatus and P. japonicus were 65.15 and 47.62 g/m2 in the PP ecosystem, and those of P. trituberculatus, P. japonicus, and S. constricta were 64.96, 48.06, and 100.79 g/m2 in the PPS ecosystem, respectively. At adequate feeding levels, the carrying capacities of P. trituberculatus and P. japonicus were 83.76 and 48.52 g/m2 in the PP ecosystem and 81.82 and 53.44 g/m2 in the PPS ecosystem. The ecotrophic efficiency values and energy flow parameters of the two integrated pond aquaculture ecosystems indicated that S. constricta was a suitable collocation culture species for P. trituberculatus and P. japonicus, and there is room for further improvement in yields of this integrated aquaculture ecosystem.

Sugarcane bagasse biochar: A suitable amendments for inland saline pond water productivity

Aim: To ameliorate the inland saline water through biochar for enhancing the pond water productivity and utilize the vast resources of salt affteced land and ground saline water efficiently for aquaculture. Methodology: A 50 days incubation study was conducted to understand the ameliorating effects of sugarcane bagasse biochar on the inland saline sediment and water. Biochar was applied at the rate of 100 g and 200 g in both sediment and water, respectively. Results: Significant (P≤ 0.05) increase in pH, available-N, potassium, available-Pand decrease in total alkalinity was observed in all the treatments. The primary productivity significantly increased (P≤ 0.05) in all the treatments, and the maximum was observed in T4 treatment (0.173 mg m-3). Interpretation: The sediment mixing and water application differ in their effect on the primary productivity and physico-chemical properties of inland saline pond water. The study will help in developing protocol for the application of agro-waste-derived biochar in the inland saline pond aquaculture system.

Association of Aquaculture Environment Microbiota with Metabolism in American Shad (Alosa Sapidissima)

The environment microbiome affects the growth and development of fish species. Information of the environment microbiome is beneficial to increase the production of fish in different aquaculture systems. In this study we analyzed differences in environmental microbial composition, intestinal metabolites and differentially expressed genes (DEGs) in American shad living in tank aquaculture and pond aquaculture environment. The results demonstrated that the dominant phyla were Bacteroidetes, Actinobacteria, Fusobacteria, Gemmatimonadetes, Firmicutes, Acidobacteria, Nitrospirae and Epsilonbacteraeota in two different environments. There were significantly changed of metabolites in different aquaculture environment, including DP-ethanolamine, L-proline, sulfuric acid, L-valine, L-tryptophan, creatinine, uric acid and L-isoleucine. The transcriptome data revealed eight genes (As23G026314, As04G005148, As21G024434, As04G005193, As23G026314, As13G016035, As02G001872 and As07G009244) related to metabolisms significantly changed in pond aquaculture group compared to tank aquaculture group. In addition, the body weight, amino acid metabolism, and glycerophospholipid metabolism of American shad also significantly changed in the pond aquaculture environment. Therefore, identifying the predominant microbiome in the aquaculture environment may be prevent the disease from occurring and maintain healthy fish reared in the aquaculture environment.