What Graphs are 2-Dot Product Graphs?

Let [Formula: see text] be an integer. From a set of [Formula: see text]-dimensional vectors, we obtain a [Formula: see text]-dot by letting each vector [Formula: see text] correspond to a vertex [Formula: see text] and by adding an edge between two vertices [Formula: see text] and [Formula: see text] if and only if their dot product [Formula: see text], for some fixed, positive threshold [Formula: see text]. Dot product graphs can be used to model social networks. Recognizing a [Formula: see text]-dot product graph is known to be NP -hard for all fixed [Formula: see text]. To understand the position of [Formula: see text]-dot product graphs in the landscape of graph classes, we consider the case [Formula: see text], and investigate how [Formula: see text]-dot product graphs relate to a number of other known graph classes including a number of well-known classes of intersection graphs.

Link prediction in dynamic networks using random dot product graphs

The problem of predicting links in large networks is an important task in a variety of practical applications, including social sciences, biology and computer security. In this paper, statistical techniques for link prediction based on the popular random dot product graph model are carefully presented, analysed and extended to dynamic settings. Motivated by a practical application in cyber-security, this paper demonstrates that random dot product graphs not only represent a powerful tool for inferring differences between multiple networks, but are also efficient for prediction purposes and for understanding the temporal evolution of the network. The probabilities of links are obtained by fusing information at two stages: spectral methods provide estimates of latent positions for each node, and time series models are used to capture temporal dynamics. In this way, traditional link prediction methods, usually based on decompositions of the entire network adjacency matrix, are extended using temporal information. The methods presented in this article are applied to a number of simulated and real-world graphs, showing promising results.

Optimal Bayesian estimation for random dot product graphs

Summary We propose and prove the optimality of a Bayesian approach for estimating the latent positions in random dot product graphs, which we call posterior spectral embedding. Unlike classical spectral-based adjacency, or Laplacian spectral embedding, posterior spectral embedding is a fully likelihood-based graph estimation method that takes advantage of the Bernoulli likelihood information of the observed adjacency matrix. We develop a minimax lower bound for estimating the latent positions, and show that posterior spectral embedding achieves this lower bound in the following two senses: it both results in a minimax-optimal posterior contraction rate and yields a point estimator achieving the minimax risk asymptotically. The convergence results are subsequently applied to clustering in stochastic block models with positive semidefinite block probability matrices, strengthening an existing result concerning the number of misclustered vertices. We also study a spectral-based Gaussian spectral embedding as a natural Bayesian analogue of adjacency spectral embedding, but the resulting posterior contraction rate is suboptimal by an extra logarithmic factor. The practical performance of the proposed methodology is illustrated through extensive synthetic examples and the analysis of Wikipedia graph data.