indole production
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2021 ◽  
Vol 38 (4) ◽  
pp. 527-531
Author(s):  
Pınar Çağlayan

In the present study, strain MHDS3 was isolated from a water sample of Çamaltı Saltern and identified using conventional and molecular methods. 16S rRNA gene sequence analyses showed that the strain MHDS3 belonged to Planococcus dechangensis species. It gave a positive result in the Gram staining test. The cells were coccus, non-motile, aerobic, catalase positive, oxidase negative and the colony pigmentation was yellow-orange. It showed negative results for citrate utilization, indole production from tryptophane, Voges-Proskauer and methyl red. This isolate was able to grow at 10-45°C (optimally 35°C), pH 6-8 (optimally pH 7) and 3-20% NaCl (optimally 10% NaCl). It was not able to grow at 4°C, 10°C, 50°C, salt-free, 0.5%, 25%, %30 total salt, pH 4-5, and pH 9-12. Glucose, ribose, fructose, sucrose, maltose were used by the test isolate as carbon sources. Different amino acids found in the structure of animal hide such as L-lysine, L-arginine, L-cysteine, L-alanine, L-tyrosine, L-histidine were also utilized by the bacterium. During the salt production process, this bacterium may contaminate the salt which is used in the food and leather industries. The activities of harmful moderately halophilic bacteria should be prevented by effective antimicrobial applications.


2021 ◽  
Author(s):  
Rene Flores Clavo ◽  
Esteban Valladolid-Suyon ◽  
Karin Reynosa-Farronan ◽  
Cristian Daniel Asmat Ortega ◽  
Gabriel Zuniga Valdera ◽  
...  

Soil salinity negatively affects the development of agricultural crops. The utilization of plant growth-promoting rhizobacteria is a biotechnological alternative to mitigate this problem. Rhizobacteria were isolated from the roots and rhizosphere of Prosopis limensis Bentham carob to identify them and determine their potential as plant growth-promoters under salt stress. First, ACC deaminase activity was determined in Dworkin & Foster (DF) minimum medium with 3.0 mM ACC as a source of nitrogen; besides, tolerance to sodium chloride was determined in Nutrient Broth (NB) supplemented with 10% NaCI. Then, bacteria displaying ACC deaminase activity and a 10% NaCI tolerance were selected, identified through genomic analysis targeting the 16s rRNA gene, and inoculated into Raphanus sativus L. radish seeds to determine the effect on germination percentage under salt stress (80 mM NaCI) and, also on indole production and phosphate solubilization. Isolates were also utilized to evaluate their effect on the growth of radish in saline soils. Genomic analysis showed two bacterial isolates from the genus Pseudomonas and one from the genus Bordetella: Isolate MW604823 was identified as Pseudomonas sp.; isolate MW604824, as Pseudomonas hunanensis; and isolate MW604826 as Bordetella muralis. Thee isolates demonstrated ACC deaminase activity and tolerance to 10% NaCI. Inoculation of the isolates on radish seeds increased germination percentage compared to the control. The isolates displayed in vitro indole production and phosphate solubilization capacity. Moreover, the isolates promoted the growth of radish under salt stress conditions, increasing, leave number, root number, aerial, and root biomass, demonstrating their potential as a biofertilizers.


2021 ◽  
Author(s):  
Nina Batorek Lukač ◽  
Marjeta Čandek-Potokar ◽  
Martin Škrlep ◽  
Valentina Kubale ◽  
Etienne Labussière

Abstract Background: Nutritional requirements of heavy immunocastrated pigs (IM) and thus the appropriate feeding strategies have not been determined. Methods: The effects of a reduced net energy (NE) diet, achieved by including up to 10% dietary fiber were studied in 41 IM pigs fed ad libitum with an extended period between immunization and slaughter (i.e. 8 weeks). Traits assessed included growth performance (before and after immunization at 112 days of age), fat deposition, intestinal skatole and indole production, intestinal morphology, and cell proliferation. Results: From 84 days of age, IM pigs were fed diets with low, medium, or high NE content (LNE, MNE, and HNE diets; with 8.5, 9.3, and 10.0 MJ NE/kg). There was no effect (P > 0.10) of feed NE concentration on average daily gain or the ratio of BW gain to NE intake in any of the periods studied. However, in the period from 143 to 170 days of age, there was a tendency for a higher NE intake (P = 0.08) in pigs fed the HNE diet along with higher (P < 0.01) backfat gain. Dietary treatment affected carcass composition as lower backfat thickness (P = 0.01) and lower area of fat over the longissimus muscle (P = 0.05) were observed in LNE and MNE pigs. In addition, higher lean meat content (P = 0.04) was observed in LNE pigs. Reducing the NE of the diet with fiber addition resulted in lower indole production in the ascending colon (P < 0.01), and higher skatole production (P < 0.01) in the cecum. Greater villi area, width, height and perimeter, crypt depth, and thickness of the intestinal mucosa in the jejunum, ileum, ascending colon, and descending colon were found for the LNE group (P < 0.01) than for the HNE group, while the MNE group was intermediate. Cell proliferation was not affected by dietary treatment (P > 0.05). Conclusion: The present results show that despite improved absorptive capacity (indicated by histomorphological changes in the intestinal mucosa), a reduction in dietary NE concentration reduces lipid deposition, without affecting performance or energy efficiency in IM pigs.


2021 ◽  
Vol 22 (9) ◽  
Author(s):  
Sutami SUTAMI ◽  
Purwanto PURWANTO ◽  
Retno Rosariastuti

Abstract. Sutami, Purwanto, Rosariastuti R. 2021. A salt tolerant Sphingosinicella microcystinivorans A3 isolated from soil contaminated with mercury in traditional gold mining of Jendi Village, Wonogiri District, Indonesia. Biodiversitas 22: 3785-3791. Isolation and characterization of indigenous bacteria from the soil of traditional gold mining contaminated with mercury is the first step in a series of research to explore and utilize indigenous bacteria in Jendi's area. This study was aimed to determine the characteristics and identity of bacterial isolates from soil of traditional gold mining in Jendi Village, Wonogiri contaminated by mercury. The methods used in this study included bacterial isolation, media preparation, phenotypic identification including; morphological and physiological tests and genotyping tests. The results showed that the bacterial isolate A3 grew optimally in media with the addition of 10% NaCl, at a temperature of 27°C, and pH 9. There were negative reactions to the observations of gram staining, acid production from glucose, indole production, catalase and urease, and positive reactions to oxidation. A neighbor-joining phylogenetic tree based on the 16S rRNA gene sequence showed that the A3 strain was closely related to Sphingosinicella microcystinivorans strain Y2T (JCM 13185T) with 100% Query coverage and a maximum identity of 99.56%.


2021 ◽  
Vol 12 ◽  
Author(s):  
Ezhaveni Sathiyamoorthi ◽  
Olajide Sunday Faleye ◽  
Jin-Hyung Lee ◽  
Vinit Raj ◽  
Jintae Lee

Vibrio parahaemolyticus is a food-borne pathogen recognized as the prominent cause of seafood-borne gastroenteritis globally, necessitating novel therapeutic strategies. This study examined the antimicrobial and antivirulence properties of indole and 16 halogenated indoles on V. parahaemolyticus. Among them, 4-chloroindole, 7-chloroindole, 4-iodoindole, and 7-iodoindole effectively inhibited planktonic cell growth, biofilm formation, bacterial motility, fimbrial activity, hydrophobicity, protease activity, and indole production. Specifically, 4-chloroindole at 20 μg/mL inhibited more than 80% of biofilm formation with a minimum inhibitory concentration (MIC) of 50 μg/mL against V. parahaemolyticus and Vibrio harveyi. In contrast, 7-chloroindole inhibited biofilm formation without affecting planktonic cell growth with a MIC of 200 μg/mL. Both chlorinated indoles caused visible damage to the cell membrane, and 4-chloroindole at 100 μg/mL had a bactericidal effect on V. parahaemolyticus within 30 min treatment, which is superior to the effect of tetracycline at the same dose. The quantitative structure-activity relationship (QSAR) analyses revealed that chloro and bromo at positions 4 or 5 of the indole are essential for eradicating the growth of V. parahaemolyticus. These results suggest that halogenated indoles have potential use in antimicrobial and antivirulence strategies against Vibrio species.


2021 ◽  
Vol 9 (4) ◽  
pp. 716
Author(s):  
Catherine Philippe ◽  
Fabien Szabo de Edelenyi ◽  
Laurent Naudon ◽  
Nathalie Druesne-Pecollo ◽  
Serge Hercberg ◽  
...  

Gut microbiota metabolizes tryptophan into indole, which can influence brain and behavior. Indeed, some oxidized derivatives of indole, formed in the liver, have neuroactive properties, and indole overproduction by the gut microbiota induces an anxio-depressive phenotype in rodents. The aim of this study was to investigate in humans whether there was a relationship between recurrent depressive symptoms and indole production by the gut microbiota. A case-control study was conducted in 45–65-year-old women, who were participants in the observational prospective NutriNet-Santé Study. Cases were defined as having two Center for Epidemiological Studies-Depression Scales (CES-D) scores ≥ 23 at a two-year interval (recurrent depressive symptoms, n = 87). Each case was matched with two controls (two CES-D <23; n = 174). Urinary excretion of 3-indoxylsulfate, the major final metabolite of indole, was used as a biomarker of indole production by the gut microbiota. Conditional logistic regression models for paired data showed a positive association between urinary 3-indoxylsulfate concentrations, grouped in tertiles, and recurrent depressive symptoms (odds ratio = 2.46, p for trend = 0.0264 in the final model adjusted for confounding factors). This association suggested that indole production by the gut microbiota may play a role in the onset of mood disorders in humans.


2021 ◽  
Vol 12 ◽  
Author(s):  
Rui Xiong ◽  
Yuyang Liu ◽  
Jieying Pu ◽  
Jianping Liu ◽  
Dexiang Zheng ◽  
...  

Indole works as an interspecies signal molecule to regulate multiple physiological activities, like antibiotic resistance, acid resistance, and virulence. However, the effect of indole on conjugation is unknown. Here, with Escherichia coli SM10λπ as a donor strain that carries a chromosomally integrated conjugative RP4 plasmid, we explored the effect of indole on conjugation of a mobilizable pUCP24T plasmid imparting gentamycin resistance. The results showed that exogenous indole treatment inhibited conjugative transfer of pUCP24T from SM10λπ to recipient strains, Pseudomonas aeruginosa PAO1 and E. coli EC600. Furthermore, raising endogenous indole production through overexpression of TnaA, a tryptophanase, in SM10λπ significantly inhibited both SM10λπ-PAO1 and SM10λπ-EC600 conjugation, whereas deficiency of tnaA reversed the phenotype. Subsequent mechanistic studies revealed that exogenous indole significantly inhibited the expression of mating pair formation gene (trbB) and the DNA transfer and replication gene (trfA), mainly due to the promotion of regulatory genes (korA and korB), and the result was confirmed in tnaA knockout and overexpression strains. Additionally, we found that both extracellular indole production and tnaA expression of SM10λπ were downregulated by ciprofloxacin (CIP). Intriguingly, one-eighth minimum inhibitory concentration of CIP treatment clearly facilitated both SM10λπ-PAO1 and SM10λπ-EC600 conjugation, and indole inhibited CIP-induced conjugation frequency. These data suggest that indole may play a negative role in the process of CIP-induced conjugation. This is the first study to reveal the biological function of indole-inhibiting conjugation and its role in CIP-induced conjugation, which may be developed into a new way of controlling the spread of antibiotic resistance.


Animals ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 1950 ◽  
Author(s):  
Giuseppe Bee ◽  
Nathalie Quiniou ◽  
Hanne Maribo ◽  
Galia Zamaratskaia ◽  
Peadar G. Lawlor

This paper reviews the current knowledge on the nutritional requirements of entire male and immunocastrated pigs to obtain an efficient growth, low boar taint level, and good carcass and meat quality. We present the reasons for offering entire males ad libitum access to the diets in order to optimize their protein deposition potential. Boar taint is one of the major issues in the production of entire males; therefore, the impact of various skatole- and indole-reducing feed ingredients is discussed regarding their efficiency and the possible mechanism affecting skatole and indole production in the hindgut. Entire males have lean carcasses, so their intramuscular fat content can be lower than that of surgical castrates or females and the adipose tissue can be highly unsaturated. The possible nutritional strategies to counteract these effects are summarized. We conclude that immunocastrates can be fed similarly to entire males until the second vaccination. However, due to the metabolic changes occurring shortly after the second vaccination, the requirements for essential amino acids are markedly lower in immunocastrates than in entire males.


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