Integrated Metabolomic and Transcriptomic Analysis of the Anthocyanin and Proanthocyanin Regulatory Networks in Red Walnut Natural Hybrid Progeny Leaves

BackgroundWalnuts are one of the most important dry fruit crops worldwide, typically exhibiting green leaves and yellow–brown or gray–yellow seed coats. A specific walnut type, red walnut ‘RW-1’, with red leaves and seed coats was selected as the plant material because of its higher anthocyanin and proanthocyanin (PA) contents. Anthocyanins and PAs coprise important secondary defense methods for plants to respond to biotic and abiotic stresses. However, few studies have focused on the molecular mechanism of anthocyanin biosynthesis in walnuts.ResultsFrom the results of widely targeted metabolome and anthocyanidin detection analysis, 395 substances, including 4 PAs and 26 anthocyanins, were identified from the red-leaf walnuts of RW-1 natural hybrid progenies (SR) and the green-leaf walnuts of RW-1 natural hybrid progenies (SG). Among these, all anthocyanin types in SR were significantly upregulated compared with SG. Additionally, delphinidin 3-O-galactoside, cyanidin 3-O-galactoside, delphinidin 3-O-glucoside and cyanidin 3-O-glucoside were identified as the primary components of anthocyanidins because of their higher contents. Nine anthocyanidins, malvidin 3-O-galactoside, malvidin 3-O-arabinoside, cyanidin 3-O-(6-O-malonyl-beta-D-glucoside), delphinidin 3-O-glucoside, delphinidin 3,5-O-diglucoside (Delphin), peonidin 3-O-(6-O-malonyl-beta-D-glucoside), petunidin 3-O-(6-O-malonyl-beta-D-glucoside), petunidin 3-O-arabinoside and pelargonidin 3-O-(6-O-malonyl-beta-D-glucoside), were detected only in the SR walnuts. For PAs, proanthocyanin C1 was upregulated in SR compared with SG, while proanthocyanin B1 and proanthocyanin B3 were upregulated in SR-1 and SR-3 but downregulated in SR-2 compared with the controls. Furthermore, transcriptome analysis demonstrated that the expression of structural genes (C4H, F3H, F3’5’H, UFGTs, LAR and ANR), four MYBs and six WD40s in the anthocyanin and PA biosynthetic pathways were significantly higher in the SR walnut.ConclusionsOur results provide valuable information on anthocyanin and PA metabolites and candidate genes in anthocyanin and PA biosynthesis, which provides new insights into anthocyanin and PA biosynthesis in walnuts.

Reproductive phenological shifts and other phylogenetic trait changes in the Arbutoideae (Ericaceae) in the context of drought, seed predation, and fire.

Phenology is an ecologically critical attribute that commonly is coordinated with other plant traits. Phenological shifts may be the result of evolutionary adjustments to persistently new conditions, or transitory, varying with annual flux in abiotic conditions. In summer-dry, fire-prone Mediterranean-climates, for example, many plant lineages have historically migrated from forests to more arid shrublands resulting in adaptive trait changes. These shifts in habitat abiotic conditions and biotic interactions influence morphology of flowers and fruits and will interact with phenological timing. The Arbutoideae (Ericaceae) is one lineage that illustrates such modifications, with fruit characters evolving among genera from fleshy to dry fruit, thin to stony endocarps, and bird to rodent dispersal, among other changes. We scored herbarium collections and used ancestral trait analysis to determine phenological shifts among the five Arbutoid genera found in semi-arid climates. Our objective was to determine if phenology shifts with the phylogenetic transition to different reproductive characters. Our results indicate that phenological shifts began with some traits, like the development of a stony endocarp or dry fruits, but not with all significant trait changes. We conclude that early phenological shifts correlating with some reproductive traits were permissive for the transition to other later character changes.

Morphology and Economic Value of Macadamia (Macadamia integrifolia Maiden and Betche)

Macadamia has a scientific name Macadamia integrifolia Maiden and Betche from the Proteaceae family. The Macadamia plant habitat is in highland areas with an altitude of 1000 masl with a temperature of ≤ 32˚C. Macadamia plants are perennials with tough stems, and the branching is visible (monopodial). The purpose of this study was to determine the morphological characteristics of Macadamia plants and their economic value. The research was conducted at PTPN XII Sempol Plantation, Bondowoso with descriptive-qualitative method. The results of morphological observations showed that macadamia fruit is a dry fruit, indehiscent (when ripe the skin/shell does not break), similar to the type of achene fruit but the shell is thick and hard. Woody stems (lignosus) with monopodial branching type, incomplete leaves consisting of stalks and leaf blades, leaf blades are oblong-elongated, incised independently, pinnate leaf bones, phyllotaxis opposite crosswise. Macadamia trees can produce round fruit of about 20-70 kg per year with a monthly profit of Rp. 8,905,500. The economic potential of the Macadamia plant is very promising, as evidenced by the ongoing import of peeled macadamia with a volume of 6,862 kilograms worth US$ 145,100 (approximately Rp 1.9 billion) or Rp 291,405.29 per kilogram.

The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae

The Rosaceae family has striking phenotypic diversity and high syntenic conservation. Gillenia trifoliata is sister species to the Maleae tribe of apple and ~1000 other species. Gillenia has many putative ancestral features, such as herb/sub-shrub habit, dry fruit-bearing and nine base chromosomes. This coalescence of ancestral characters in a phylogenetically important species, positions Gillenia as a ‘rosetta stone’ for translational science within Rosaceae. We present genomic and phenological resources to facilitate the use of Gillenia for this purpose. The Gillenia genome is the first fully annotated chromosome-level assembly with an ancestral genome complement (x = 9), and with it we developed an improved model of the Rosaceae ancestral genome. MADS and NAC gene family analyses revealed genome dynamics correlated with growth and reproduction and we demonstrate how Gillenia can be a negative control for studying fleshy fruit development in Rosaceae.

Integrated metabolomic and transcriptomic analysis of the anthocyanin regulatory networks in red walnut

Background Walnut is one of the most important dry fruit crops worldwide, typically green leaves and yellow-brown or gray-yellow seed coats. A specific walnut type, red walnut ‘RW-1’ with red leaves and seed coats was selected as plant material because of higher anthocyanins contents. Anthocyanins are important colorants with strong antioxidant activity, especially, benefic for human health. However, few studies focused on the molecular mechanism of anthocyanin biosynthesis in walnut. Results From the results of Widely Targeted Metabolome and anthocyanidin detection analysis, 395 substances, including 4 procyanidins and 26 anthocyanins, were identified from the red-leaf walnuts of RW-1 natural hybrid progenies (SR) and the green-leaf walnuts of RW-1 natural hybrid progenies (SG). Among these, all the anthocyanins in SR were significantly up-accumulated comparing with SG. Also, delphinidin 3-O-galactoside, cyanidin 3-O-galactoside, delphinidin 3-O-glucoside and cyanidin 3-O-glucoside were identified to the primary components of anthocyanidins because of the higher contents. It was noted that 9 anthocyanins including malvidin 3-O-galactoside, malvidin 3-O-arabinoside, cyanidin 3-O-(6-O-malonyl-beta-D-glucoside), delphinidin 3-O-glucoside, delphinidin 3,5-O-diglucoside (Delphin), peonidin 3-O-(6-O-malonyl-beta-D-glucoside), petunidin 3-O-(6-O-malonyl-beta-D-glucoside), petunidin 3-O-arabinoside and pelargonidin 3-O-(6-O-malonyl-beta-D-glucoside) were detected only in SR walnut. Furthermore, transcriptome analysis demonstrated that the expression of structural genes (C4H, F3H, F3’5’H and UFGTs), and four MYBs in anthocyanin biosynthetic pathway were significantly higher in SR walnut. Conclusions We identified the color formation of SR leaves is due to the accumulation of anthocyanins. And our results obtained the valuable information on the anthocyanin metabolites and candidate genes in anthocyanin biosynthesis, which provided new insights into the anthocyanin biosynthesis in walnuts.

Impacts of Extracts From Styrax officinalis L. on Seedling Growth of Salvia sclarea L.

Many plant species synthesize different biochemical substances from their various organs (leaves, flowers, fruits and roots, etc.). While some of these biochemical substances which are known as allelochemicals have a stimulating effect on the growth and development of other plants, some of them have an inhibitory effect. In this study, the effect of extracts obtained from the Styrax officinalis L., which spreads naturally in the Mediterranean and Aegean regions, on the seedling growth of Salvia sclarea L. were investigated. In the study, the extracts prepared with water at 5% concentration from dry fruit peel and seed coat of S. officinalis, and tap water as control were used. According to the results of this study, it was determined that the fruit peel and seed coat extracts obtained from S. officinalis had a significant inhibitory effect on the emergence of S. sclarea seeds and its seedling growth. The inhibitory effect of fruit peel was higher than that of seed coat.

Sensory Lexicon and Major Volatiles of Rakı Using Descriptive Analysis and GC-FID/MS

Rakı is a traditional and Protected Designation of Origin (PDO) alcoholic beverage that is distilled from grape distillate with Pimpinella anisum L. in copper pot stills in Turkey. This study focused on the development of a sensory lexicon, a sensory wheel, using a consensus approach and the determination of major volatiles by GC-FID/MS for Rakı. A total of 37 Rakı samples representing all producers were used for volatile and sensory evaluation. The experts identified 78 attributes and references for the lexicon. The main attributes were spicy, anise, sweet, resinous, fruity, dry fruit, floral, head&tail aroma and white colour. The Rakı sensory wheel was created to provide a graphical display of its sensory attributes. For validation of the lexicon, 18 samples were evaluated using descriptive analysis. The results were subjected to PCA to examine the relationship of the samples with the defined sensory attributes. The PCA results show that there is a significant relationship between the Rakı categories and sensory terms and flavour intensities. The GC-MS analyses depicted the following major volatile compounds n-propanol, 2-methyl-1-propanol, 2 and 3-methyl-1-butanol, ethyl-acetate, acetal, acetaldehyde, trans-anethol and estragole. The characterization of the product using its most distinctive sensory descriptors are important tool and can be used for the industry, marketing, consumer education and scientists.

STUDY ON FIBER FURNISHES AND FIBER MORPHOLOGICAL PROPERTIES OF COMMONLY USED INDIAN FOOD PACKAGING PAPERS AND PAPERBOARDS

Maintaining the quality of their final paper-based food packaging products at a high and constant level is a key issue for food packaging manufacturers to meet the customer demands. In the present study, in order to analyze the present status of quality of paper-based food packages in India, the fiber furnishes of different common paper- and paperboard-based food packages were studied by the Graff “C” staining test and their fiber morphological properties – by MorFi analysis. The staining test results showed that all the samples contained fiber furnish made either by the chemical or by the mechanical pulping process. Tea bags, dry fruit boxes and egg trays were made of 4 different fiber components, while sugar sachets and juice boxes contained 3 fiber components. It was also observed that all the samples contained hardwood and softwood chemical fibers. MorFi analysis determined the morphological properties of the fibers, including the mean fiber length and width, coarseness, kink angle, kinked fibers %, curl % and fines elements % in total analyzed fibers. The results thus obtained confirmed that both these techniques are very reliable and feasible tools to study the quality of paper-based food packages.