Phylogenetic analysis based on full genome sequencing of Italian tomato spotted wilt virus isolates identified in “Roggianese” sweet pepper and chilli pepper

2020 ◽  
Vol 176 (2) ◽  
pp. 170-179 ◽  
Author(s):  
Anna Fontana ◽  
Giuliana Albanese ◽  
Ariana Manglli ◽  
Laura Tomassoli ◽  
Antonio Tiberini
2016 ◽  
Vol 24 (1) ◽  
pp. 5-12 ◽  
Author(s):  
Hanna Berniak

Abstract Two Tomato spotted wilt virus (TSWV) isolates H1 and H2 found in Hippeastrum hybridum plants were characterized based on biological, serological, and molecular properties. Virus isolates showed differences in symptom expression – H1 isolate displayed severe necrotic spots and patterns, whereas mild mosaic symptoms were observed on H2-infected H. hybridum plants. Both TSWV isolates showed comparable reactivity with TSWV-specific antibodies and they induced similar symptoms on herbaceous indicator plants, but some differences between these isolates were detected at the nucleotide sequence level of genomic S and M ssRNAs segment fragments. The nucleotide sequences encoding nucleocapsid (N) and nonstructural (NSs and NSm) proteins showed 98.2%, 97.5%, and 96.5% identity, respectively. Phylogenetic analysis of N and NSs sequences conducted for tested isolates and 31 TSWV isolates included for comparison revealed that H1 and H2 isolates fell into the same cluster and they were grouped together with isolates found previously in different vegetables, ornamentals, and weeds. When NSm ORF was analyzed, the tested isolates formed a separate cluster: H1 isolate showed the highest affinity with TSWV isolates infecting chrysanthemum and pepper plants, whereas H2 isolate was most closely related to other virus isolates found in sweet pepper and tomatoes. These results indicate that both isolates were reassortants between different virus isolates, and represented two novel genetic patterns of TSWV.


Virus Genes ◽  
2014 ◽  
Vol 50 (1) ◽  
pp. 71-78 ◽  
Author(s):  
Asztéria Almási ◽  
Gábor Csilléry ◽  
Zsófia Csömör ◽  
Katalin Nemes ◽  
László Palkovics ◽  
...  

1993 ◽  
Vol 59 (6) ◽  
pp. 626-634 ◽  
Author(s):  
Shinya TSUDA ◽  
Kaoru HANADA ◽  
Yuzo MINOBE ◽  
Mitsuro KAMEYA-IWAKI ◽  
Keiichi TOMARU

2009 ◽  
Vol 62 ◽  
pp. 408-408
Author(s):  
R.A. Lister ◽  
J.D. Fletcher ◽  
G.M. Timmerman-Vaughan

The capsid protein genes of thirteen isolates of tomato spotted wilt virus (TSWV) (Tospovirus) occurring in New Zealand have been sequenced TSWV is a thripsvectored virus causing serious damage in field and covered crops With recent new incursions of thrips species and tospoviruses it was considered of interest to identify what if any sequence variation occurs in the New Zealand TSWV isolates both from a temporal and geographic perspective The material chosen for sequencing was sourced from fresh glasshouse and field samples and also from samples that had been stored frozen for several years The oldest TSWV isolate was collected in 1992 and stored frozen since then and the most recently collected was from fresh material in 2008 Samples were obtained from several geographic locations throughout New Zealand When compared to the worldwide TSWV capsid gene sequence data held in GenBank cluster analysis of the sequence data has placed the New Zealand isolates into distinct groups Observations of the most closely related strains on a global scale may provide clues to the country of origin from which historic TSWV incursions into New Zealand originated


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