Resistance and Not Plant Fruit Traits Determine Root-Associated Bacterial Community Composition along a Domestication Gradient in Tomato

Soil bacterial communities are involved in multiple ecosystem services, key in determining plant productivity. Crop domestication and intensive agricultural practices often disrupt species interactions with unknown consequences for rhizosphere microbiomes. This study evaluates whether variation in plant traits along a domestication gradient determines the composition of root-associated bacterial communities; and whether these changes are related to targeted plant traits (e.g., fruit traits) or are side effects of less-often-targeted traits (e.g., resistance) during crop breeding. For this purpose, 18 tomato varieties (wild and modern species) differing in fruit and resistance traits were grown in a field experiment, and their root-associated bacterial communities were characterised. Root-associated bacterial community composition was influenced by plant resistance traits and genotype relatedness. When only considering domesticated tomatoes, the effect of resistance on bacterial OTU composition increases, while the effect due to phylogenetic relatedness decreases. Furthermore, bacterial diversity positively correlated with plant resistance traits. These results suggest that resistance traits not selected during domestication are related to the capacity of tomato varieties to associate with different bacterial groups. Taken together, these results evidence the relationship between plant traits and bacterial communities, pointing out the potential of breeding to affect plant microbiomes.

Phenology, seasonality and trait relationships in a New Zealand forest

<p>The phenologies of flowers, fruits and leaves can have profound implications for plant community structure and function. Despite this only a few studies have documented fruit and flower phenologies in New Zealand while there are even fewer studies on leaf production and abscission phenologies. To address this limitation, I measured phenological patterns in leaves, flowers and fruits in 12 common forest plant species in New Zealand over two years. All three phenologies showed significant and consistent seasonality with an increase in growth and reproduction around the onset of favourable climatic conditions; flowering peaked in early spring, leaf production peaked in mid-spring and fruit production peaked in mid-summer coincident with annual peaks in temperature and photoperiodicity. Leaf abscission, however, occurred in late autumn, coincident with the onset of less productive environmental conditions. I also investigated differences in leaf longevities and assessed how seasonal cycles in the timing of leaf production and leaf abscission times might interact with leaf mass per area (LMA) in determining leaf longevity. Leaf longevity was strongly associated with LMA but also with seasonal variation in climate. All 12 species produced leaves in spring and abscised leaves in autumn. Nevertheless, leaf longevity ranged from 6 months to 30 months among species, leading to several distinct leaf longevity categories (i.e. 6-7 months, 15-18 months and 27-30 months). Finally, I examined the relationship of leaf traits with flower and fruit traits and their relation to the global leaf economic spectrum (LES) that describes multivariate correlations between a combinations of key leaf traits. The results resonated with the patterns of leaf economic spectrum for New Zealand species and provided evidence for significant correlations between leaf and fruit traits, indicating that plants with long lived leaves and higher LMA produce fruits that take more time to develop, stay on the plant longer and have larger seed size. This study contributed to bridging the gap in our understanding of the relationship between vegetative and reproductive traits, it has increased our understanding of phenological patterns in New Zealand forests, and when viewed with earlier phenological studies, provides a first step towards understanding how New Zealand forest might respond to global climate change. In addition, the research illustrates how seasonality in climate can constrain the life times of leaves. In the context of global trait research culminating into the whole plant economics spectrum, this study provides clear evidence of leaf and fruit phenological and morphological trait associations. It helps to further our understanding of phenology, seasonality and plant trait relationships for some common tree species in New Zealand and presents some novel findings that provide a basis for future research.</p>

Phenology, seasonality and trait relationships in a New Zealand forest

<p>The phenologies of flowers, fruits and leaves can have profound implications for plant community structure and function. Despite this only a few studies have documented fruit and flower phenologies in New Zealand while there are even fewer studies on leaf production and abscission phenologies. To address this limitation, I measured phenological patterns in leaves, flowers and fruits in 12 common forest plant species in New Zealand over two years. All three phenologies showed significant and consistent seasonality with an increase in growth and reproduction around the onset of favourable climatic conditions; flowering peaked in early spring, leaf production peaked in mid-spring and fruit production peaked in mid-summer coincident with annual peaks in temperature and photoperiodicity. Leaf abscission, however, occurred in late autumn, coincident with the onset of less productive environmental conditions. I also investigated differences in leaf longevities and assessed how seasonal cycles in the timing of leaf production and leaf abscission times might interact with leaf mass per area (LMA) in determining leaf longevity. Leaf longevity was strongly associated with LMA but also with seasonal variation in climate. All 12 species produced leaves in spring and abscised leaves in autumn. Nevertheless, leaf longevity ranged from 6 months to 30 months among species, leading to several distinct leaf longevity categories (i.e. 6-7 months, 15-18 months and 27-30 months). Finally, I examined the relationship of leaf traits with flower and fruit traits and their relation to the global leaf economic spectrum (LES) that describes multivariate correlations between a combinations of key leaf traits. The results resonated with the patterns of leaf economic spectrum for New Zealand species and provided evidence for significant correlations between leaf and fruit traits, indicating that plants with long lived leaves and higher LMA produce fruits that take more time to develop, stay on the plant longer and have larger seed size. This study contributed to bridging the gap in our understanding of the relationship between vegetative and reproductive traits, it has increased our understanding of phenological patterns in New Zealand forests, and when viewed with earlier phenological studies, provides a first step towards understanding how New Zealand forest might respond to global climate change. In addition, the research illustrates how seasonality in climate can constrain the life times of leaves. In the context of global trait research culminating into the whole plant economics spectrum, this study provides clear evidence of leaf and fruit phenological and morphological trait associations. It helps to further our understanding of phenology, seasonality and plant trait relationships for some common tree species in New Zealand and presents some novel findings that provide a basis for future research.</p>

Genomic Approaches for Improvement of Tropical Fruits: Fruit Quality, Shelf Life and Nutrient Content

The breeding of tropical fruit trees for improving fruit traits is complicated, due to the long juvenile phase, generation cycle, parthenocarpy, polyploidy, polyembryony, heterozygosity and biotic and abiotic factors, as well as a lack of good genomic resources. Many molecular techniques have recently evolved to assist and hasten conventional breeding efforts. Molecular markers linked to fruit development and fruit quality traits such as fruit shape, size, texture, aroma, peel and pulp colour were identified in tropical fruit crops, facilitating Marker-assisted breeding (MAB). An increase in the availability of genome sequences of tropical fruits further aided in the discovery of SNP variants/Indels, QTLs and genes that can ascertain the genetic determinants of fruit characters. Through multi-omics approaches such as genomics, transcriptomics, metabolomics and proteomics, the identification and quantification of transcripts, including non-coding RNAs, involved in sugar metabolism, fruit development and ripening, shelf life, and the biotic and abiotic stress that impacts fruit quality were made possible. Utilizing genomic assisted breeding methods such as genome wide association (GWAS), genomic selection (GS) and genetic modifications using CRISPR/Cas9 and transgenics has paved the way to studying gene function and developing cultivars with desirable fruit traits by overcoming long breeding cycles. Such comprehensive multi-omics approaches related to fruit characters in tropical fruits and their applications in breeding strategies and crop improvement are reviewed, discussed and presented here.