Formation, collective motion, and merging of macroscopic bacterial aggregates

Chemotactic bacteria form emergent spatial patterns of variable cell density within cultures that are initially spatially uniform. These patterns are the result of chemical gradients that are created from the directed movement and metabolic activity of billions of cells. A recent study on pattern formation in wild bacterial isolates has revealed unique collective behaviors of the bacteria Enterobacter cloacae. As in other bacterial species, Enterobacter cloacae form macroscopic aggregates. Once formed, these bacterial clusters can migrate several millimeters, sometimes resulting in the merging of two or more clusters. To better understand these phenomena, we examine the formation and dynamics of thousands of bacterial clusters that form within a 22 cm square culture dish filled with soft agar over two days. At the macroscale, the aggregates display spatial order at short length scales, and the migration of cell clusters is superdiffusive, with a merging acceleration that is correlated with aggregate size. At the microscale, aggregates are composed of immotile cells surrounded by low density regions of motile cells. The collective movement of the aggregates is the result of an asymmetric flux of bacteria at the boundary. An agent-based model is developed to examine how these phenomena are the result of both chemotactic movement and a change in motility at high cell density. These results identify and characterize a new mechanism for collective bacterial motility driven by a transient, density-dependent change in motility.

Integration of allocentric and egocentric visual information in a convolutional / multilayer perceptron network model of goal-directed gaze shifts

Allocentric (landmark-centered) and egocentric (eye-centered) visual codes are fundamental for spatial cognition, navigation, and goal-directed movement. Neuroimaging and neurophysiology suggest these codes are segregated initially, but then reintegrated in frontal cortex for movement control. We created and validated a theoretical framework for this process using physiologically constrained inputs and outputs. To implement a general framework, we integrated a Convolutional Neural Network (CNN) of the visual system with a Multilayer Perceptron (MLP) model of the sensorimotor transformation. The network was trained on a task where a landmark shifted relative to the saccade target. These visual parameters were input to the CNN, the CNN output and initial gaze position to the MLP, and a decoder transformed MLP output into saccade vectors. Decoded saccade output replicated idealized training sets with various allocentric weightings, and actual monkey data where the landmark shift had a partial influence (R2 = 0.8). Furthermore, MLP output units accurately simulated prefrontal response field shifts recorded from monkeys during the same paradigm. In summary, our model replicated both the general properties of the visuomotor transformations for gaze and specific experimental results obtained during allocentric-egocentric integration, suggesting it can provide a general framework for understanding these and other complex visuomotor behaviors.

Cell polarity determinant Dlg1 facilitates epithelial invagination by promoting tissue-scale mechanical coordination

Epithelial folding mediated by apical constriction serves as a fundamental mechanism to convert flat epithelial sheets into multilayered structures. It remains elusive whether additional mechanical inputs are required for folding mediated by apical constriction. Using Drosophila mesoderm invagination as a model, we identified an important role for the non-constricting, lateral mesodermal cells adjacent to the constriction domain ("flanking cells") in facilitating epithelial folding. We found that depletion of the basolateral determinant, Dlg1, disrupts the transition between apical constriction and invagination without affecting the rate of apical constriction. Strikingly, the observed delay in invagination is associated with ineffective apical myosin contractions in the flanking cells that lead to overstretching of their apical domain. The defects in the flanking cells impede ventral-directed movement of the lateral ectoderm, suggesting reduced mechanical coupling between tissues. Specifically disrupting the flanking cells in wildtype embryos by laser ablation or optogenetic depletion of cortical actin is sufficient to delay the apical constriction-to-invagination transition. Our findings indicate that effective mesoderm invagination requires intact flanking cells and suggest a role for tissue-scale mechanical coupling during epithelial folding.

Developmental Differences in the Prospective Organisation of Goal-Directed Movement Between Children with Autism and Typically Developing Children: A Smart Tablet Serious Game Study

Movement is prospective. It structures self-generated engagement with objects and social partners and is fundamental to children’s learning and development. In autistic children, previous reports of differences in movement kinematics compared to neurotypical peers suggest its prospective organisation might be disrupted. Here, we employed a smart tablet serious game paradigm to assess differences in the feedforward and feedback mechanisms of prospective action organisation, between autistic and neurotypical preschool children. We analysed 3926 goal-directed finger movements made during smart-tablet ecological gameplay, from 28 children with Childhood Autism (ICD-10; ASD) and 43 neurotypical children (TD), aged 3-6 years old. Using linear and generalised linear mixed-effect models, we found the ASD group executed movements with longer Movement Time (MT) and Time to Peak Velocity (TTPV), lower Peak Velocity (PV), with peak velocity less likely to occur in the first movement unit, and with a greater number of Movement Units After Peak Velocity (MU-APV). Interestingly, compared to the TD group, the ASD group showed smaller increases in PV, TTPV and MT with an increase in Age (ASD x Age interaction), together with a smaller reduction in MU-APV and an increase in MU-APV at shorter target distances (ASD x Dist interaction). Our results are the first to highlight different developmental trends in anticipatory feedforward and compensatory feedback mechanisms of control, contributing to differences in movement kinematics observed between autistic and neurotypical children. These findings point to differences in integration of prospective perceptuomotor information, with implications for embodied cognition and learning from self-generated action in autism.

Capacity for movement is an organisational principle in object representations

The ability to perceive moving objects is crucial for survival and threat identification. The association between the ability to move and being alive is learned early in childhood, yet not all moving objects are alive. Natural, non-agentive movement (e.g., clouds, fire) causes confusion in children and adults under time pressure. Recent neuroimaging evidence has shown that the visual system processes objects on a spectrum according to their ability to engage in self-propelled, goal-directed movement. Most prior work has used only moving stimuli that are also animate, so it is difficult to disentangle the effect of movement from aliveness or animacy in representational categorisation. In the current study, we investigated the relationship between movement and aliveness using both behavioural and neural measures. We examined electroencephalographic (EEG) data recorded while participants viewed static images of moving or non-moving objects that were either natural or artificial. Participants classified the images according to aliveness, or according to capacity for movement. Behavioural classification showed two key categorisation biases: moving natural things were often mistaken to be alive, and often classified as not moving. Movement explained significant variance in the neural data, during both a classification task and passive viewing. These results show that capacity for movement is an important dimension in the structure of human visual object representations.

The problem of “anomalous” ion transport in high-current vacuum discharges

This paper gives an exhaustive theoretical description of the so-called “anomalous” ion transport phenomenon that exists in vacuum diodes with cathode plasma emission. The phenomenon is represented by the cathode plasma directed movement towards anode. In general terms, the “anomality” means that metal ions are accelerated towards an electrode with a higher electrostatic potential (anode). The theoretical description is given within the framework of a one-dimensional kinetic model, which is based on the Vlasov-Poisson system of equations for plasma and electrostatic field components. Time-dependent accurate numerical solution of this system describes the process evolution leading to “anomalous” ion transport. It was shown that the “anomalous” transport has fast electrodynamic nature.

Chemophoresis Engine: Universal Principle of ATPase-driven Cargo Transport

Cell polarity regulates the orientation of the cytoskeleton members that directs intracellular transport for cargo-like organelles, using chemical gradients sustained by ATP or GTP hydrolysis. However, how cargo transports are directly mediated by chemical gradients remains unknown. We previously proposed a physical mechanism that enables directed movement of cargos, referred to as chemophoresis. According to the mechanism, a cargo with reaction sites is subjected to a chemophoresis force in the direction of the increased concentration. Based on this, we introduce an extended model, the chemophoresis engine, as a general mechanism of cargo motion, which transforms chemical free energy into directed motion through the catalytic ATP hydrolysis. We applied the engine to plasmid motion in a parABS system to demonstrate the the self-organization system for directed plasmid movement and pattern dynamics of ParA-ATP concentration, thereby explaining plasmid equi-positioning and pole-to-pole oscillation observed in bacterial cells and in vitro experiments. We mathematically show the existence and stability of the plasmid-surfing pattern, which allows the cargo-directed motion through the symmetry-breaking transition of the ParA- ATP spatiotemporal pattern. Finally, based on its generality, we discuss the chemophoresis engine as a universal principle of hydrolysis-driven intracellular transport.

Post-fire movements of Pacific marten (Martes caurina) depend on the severity of landscape change

Background Wildfires and forestry activities such as post-fire salvage logging are altering North American forests on a massive scale. Habitat change and fragmentation on forested landscapes may threaten forest specialists, such as Pacific marten (Martes caurina), that require closed, connected, and highly structured habitats. Although marten use burned landscapes, it is unclear how these animals respond to differing burn severities, or how well they tolerate additional landscape change from salvage logging. Methods We used snow tracking and GPS collars to examine marten movements in three large burns in north-central Washington, USA (burned in 2006) and central British Columbia, Canada (burned in 2010 and 2017). We also assessed marten habitat use in relation to areas salvage-logged in the 2010 burn. We evaluated marten path characteristics in relation to post-fire habitat quality, including shifts in behaviour when crossing severely-disturbed habitats. Using GPS locations, we investigated marten home range characteristics and habitat selection in relation to forest cover, burn severity, and salvage logging. Results Marten in the 2006 burn shifted from random to directed movement in areas burned at high severity; in BC, they chose highly straight paths when crossing salvage-blocks and meadows. Collared marten structured their home ranges around forest cover and burn severity, avoiding sparsely-covered habitats and selecting areas burned at low severity. Marten selected areas farther from roads in both Washington and BC, selected areas closer to water in the 2006 burn, and strongly avoided salvage-logged areas of the 2010 burn. Marten home ranges overlapped extensively, including two males tracked concurrently in the 2010 burn. Conclusions Areas burned at low severity provide critical habitat for marten post-fire. Encouragingly, our results indicate that both male and female marten can maintain home ranges in large burns and use a wide range of post-fire conditions. However, salvage-logged areas are not suitable for marten and may represent significant barriers to foraging and dispersal.