Influence of urbanization on stream fish assemblages in three microbasins in the Upper Paraná River Basin

The colonization pattern of fish assemblages in streams is often studied in the context of environmental filters. On the other hand, when fish assemblages are subjected to anthropogenic effects, variables associated with environmental quality assume more importance. Therefore, this work evaluated the richness and composition of fish from streams sampled at different urbanization levels, aiming to determine any direct effects on the structure of fish assemblages. To accomplish this, samples were collected from 2003 to 2011 at 31 sites distributed among 3 microbasins in the Rio Ivinhema Basin, Alto Rio Paraná. Based on environmental variables, physicochemical of the water and analysis of the use and occupation of the soil, the microbasins were classified into different urbanization levels (low, medium and high). A total of 4,320 individuals were sampled, out of which 57 fish species were recorded. Sampled sites with medium urbanization level presented higher richness compared to sampled sites with high urbanization level which presented lower richness. Species richness in these sites was explained mainly by water temperature and water velocity. Results confirmed that urbanization does directly affect environmental integrity, which, in turn, can lead to the homogenization of stream assemblages.

The rise of grasslands is linked to atmospheric CO2 decline in the late Palaeogene

Grasslands are predicted to experience a major biodiversity change by the year 2100. A better understanding of how grasslands have responded to past environmental changes will help predict the outcome of current and future environmental changes. Here, we explore the relationship between past atmospheric CO2 and temperature fluctuations and the shifts in diversification rate of Poaceae (grasses) and Asteraceae (daisies), two exceptionally species-rich grassland families (~11,000 and ~23,000 species, respectively). To this end, we develop a Bayesian approach that simultaneously estimates diversification rates through time from time-calibrated phylogenies and correlations between environmental variables and diversification rates. Additionally, we present a statistical approach that incorporates the information of the distribution of missing species in the phylogeny. We find strong evidence supporting a simultaneous increase in diversification rates for grasses and daisies after the most significant reduction of atmospheric CO2 in the Cenozoic (~34 Mya). The fluctuations of paleo-temperatures, however, appear not to have had a significant relationship with the diversification of these grassland families. Overall, our results shed new light on our understanding of the origin of grasslands in the context of past environmental changes.

Physical geography, isolation by distance and environmental variables shape genomic variation of wild barley (Hordeum vulgare L. ssp. spontaneum) in the Southern Levant

Determining the extent of genetic variation that reflects local adaptation in crop-wild relatives is of interest for the purpose of identifying useful genetic diversity for plant breeding. We investigated the association of genomic variation with geographical and environmental factors in wild barley (Hordeum vulgare L. ssp. spontaneum) populations of the Southern Levant using genotyping by sequencing (GBS) of 244 accessions in the Barley 1K+ collection. The inference of population structure resulted in four genetic clusters that corresponded to eco-geographical habitats and a significant association between lower gene flow rates and geographical barriers, e.g. the Judaean Mountains and the Sea of Galilee. Redundancy analysis (RDA) revealed that spatial autocorrelation explained 45% and environmental variables explained 15% of total genomic variation. Only 4.5% of genomic variation was solely attributed to environmental variation if the component confounded with spatial autocorrelation was excluded. A synthetic environmental variable combining latitude, solar radiation, and accumulated precipitation explained the highest proportion of genomic variation (3.9%). When conditioned on population structure, soil water capacity was the most important environmental variable explaining 1.18% of genomic variation. Genome scans with outlier analysis and genome-environment association studies were conducted to identify adaptation signatures. RDA and outlier methods jointly detected selection signatures in the pericentromeric regions, which have reduced recombination, of the chromosomes 3H, 4H, and 5H. However, selection signatures mostly disappeared after correction for population structure. In conclusion, adaptation to the highly diverse environments of the Southern Levant over short geographical ranges had a limited effect on the genomic diversity of wild barley. This highlighted the importance of nonselective forces in genetic differentiation.

Modeling of the Potential Geographical Distribution of Three Fritillaria Species Under Climate Change

Fritillaria species, a well-known Chinese traditional medicine for more than 2,000 years, have become rare resources due to excessive harvesting. In order to balance the economical requirement and ecological protection of Fritillaria species, it is necessary to determine (1) the important environmental variables that were responsible for the spatial distribution, (2) distribution change in response to climate change in the future, (3) ecological niche overlap between various Fritillaria species, and (4) the correlation between spatial distribution and phylogenies as well. In this study, the areas with potential ecological suitability for Fritillaria cirrhosa, Fritillaria unibracteata, and Fritillaria przewalskii were predicted using MaxEnt based on the current occurrence records and bioclimatic variables. The result indicated that precipitation and elevation were the most important environmental variables for the three species. Moreover, the current suitable habitats of F. cirrhosa, F. unibracteata, and F. przewalskii encompassed 681,951, 481,607, and 349,199 km2, respectively. Under the scenario of the highest concentration of greenhouse gas emission (SSP585), the whole suitable habitats of F. cirrhosa and F. przewalskii reach the maximum from 2021 to 2100, while those of F. unibracteata reach the maximum from 2021 to 2100 under the scenario of moderate emission (SSP370) from 2021 to 2100. The MaxEnt data were also used to predict the ecological niche overlap, and thus high overlap occurring among three Fritillaria species was observed. The niche overlap of three Fritillaria species was related to the phylogenetic analysis despite the non-significance (P > 0.05), indicating that spatial distribution was one of the factors that contributed to the speciation diversification. Additionally, we predicted species-specific habitats to decrease habitat competition. Overall, the information obtained in this study provided new insight into the potential distribution and ecological niche of three species for the conservation and management in the future.

The Change in Environmental Variables Linked to Climate Change Has a Stronger Effect on Aboveground Net Primary Productivity Than Does Phenological Change in Alpine Grasslands

More and more studies have focused on responses of ecosystem carbon cycling to climate change and phenological change, and aboveground net primary productivity (ANPP) is a primary component of global carbon cycling. However, it remains unclear whether the climate change or the phenological change has stronger effects on ANPP. In this study, we compared the effects of phenological change and climate change on ANPP during 2000–2013 across 36 alpine grassland sites on the Tibetan Plateau. Our results indicated that ANPP showed a positive relationship with plant phenology such as prolonged length of growing season and advanced start of growing season, and environmental variables such as growing season precipitation (GSP), actual vapor pressure (Ea), relative humidity (RH), and the ratio of GSP to ≥5°C accumulated temperature (GSP/AccT), respectively. The linear change trend of ANPP increased with that of GSP, Ea, RH, and GSP/AccT rather than phenology variables. Interestingly, GSP had the closer correlation with ANPP and meanwhile the linear slope of GSP had the closer correlation with that of ANPP among all the concerned variables. Therefore, climate change, mainly attributed to precipitation change, had a stronger effect on ANPP than did phenological change in alpine grasslands on the Tibetan Plateau.

Year-Round Dive Characteristics of Male Beluga Whales From the Eastern Beaufort Sea Population Indicate Seasonal Shifts in Foraging Strategies

Dive behavior represents multiple ecological functions for marine mammals, but our understanding of dive characteristics is typically limited by the resolution or longevity of tagging studies. Knowledge on the time-depth structures of dives can provide insight into the behaviors represented by vertical movements; furthering our understanding of the ecological importance of habitats occupied, seasonal shifts in activity, and the energetic consequences of targeting prey at a given depth. Given our incomplete understanding of Eastern Beaufort Sea (EBS) beluga whale behavior over an annual cycle, we aimed to characterize dives made by belugas, with a focus on analyzing shifts in foraging strategies. Objectives were to (i) characterize and classify the range of beluga-specific dive types over an annual cycle, (ii) propose dive functions based on optimal foraging theory, physiology, and association with environmental variables, and (iii) identify whether belugas undergo seasonal shifts in the frequency of dives associated with variable foraging strategies. Satellite-linked time-depth-recorders (TDRs) were attached to 13 male belugas from the EBS population in 2018 and 2019, and depth data were collected in time series at a 75 s sampling interval. Tags collected data for between 13 and 357 days, including three tags which collected data across all months. A total of 90,211 dives were identified and characterized by twelve time and depth metrics and classified into eight dive types using a Gaussian mixed modeling and hierarchical clustering analysis approach. Dive structures identify various seasonal behaviors and indicate year-round foraging. Shallower and more frequent diving during winter in the Bering Sea indicate foraging may be energetically cheaper, but less rewarding than deeper diving during summer in the Beaufort Sea and Arctic Archipelago, which frequently exceeded the aerobic dive limit previously calculated for this population. Structure, frequency and association with environmental variables supports the use of other dives in recovery, transiting, and navigating through sea ice. The current study provides the first comprehensive description of the year-round dive structures of any beluga population, providing baseline information to allow improved characterization and to monitor how this population may respond to environmental change and increasing anthropogenic stressors.

The phytoplankton community as a descriptor of environmental variability: a case study in five reservoirs of the Paraná River basin

Aim We aimed to characterize the structure of the phytoplankton community and identify the main environmental factors driving the community in five reservoirs constructed in the region of the high Paraná River. Methods The phytoplankton and environmental variables were collected at the lacustrine region of the reservoir, between November 2013 and November 2014, with interval between collections ranged from 3 to 6 months. The richness and biomass of the phytoplankton community were measured as a response to the spatial and temporal environmental variability. Data from environmental variables was analyzed by Principal Component Analysis (PCA). Non-Metric Multidimensional Scaling Analyzes (NMDS) were performed on the richness and biomass data of the phytoplankton community. Results We identified 80 taxa distributed in 11 taxonomic classes, from which Cyanobacteria and Chlorophyceae were best represented. We did not observe significant temporal variation for either environmental variables or attributes of the phytoplankton community, which may be related to the prolonged drought in this period in the Brazilian Southwest. Higher phytoplankton richness and biomass were found in the Três Irmãos (Tiete River), reservoir located in the most anthropized basin in the country. Cyanobacteria and dinoflagellates dominated the biomass in all reservoirs during the studied period. The Ilha Solteira, Jupiá and Porto Primavera reservoirs showed a tendency to decrease in the values of phytoplankton richness and biomass, and the reservoirs built in series in the Paraná River probably have strong interdependence, according to the CRCC concept. Conclusions Spatial variation in phytoplankton attributes was influenced mainly by the position occupied by the reservoir in the hydrographic basin, water retention time (RT) and nutrient concentrations in each reservoir.