Recycling of clastics in coastal areas inferred from quantitative analysis of reworked radiocarbon samples

Studies of the evolution of coastal lowlands since the Last Glacial Maximum (LGM) typically ignore radiocarbon data from sediment samples that have undergone reworking. However, these samples contain information on their sediment sources and the timing of their redeposition. We analyzed 738 radiocarbon dates obtained from shell and plant material in samples of post-LGM coastal sediment from north of Tokyo Bay, Japan. Of these samples, 245 (33%) were reworked. Furthermore, the percentage of reworked samples and their average age offsets increased with the depth of the water environment (terrestrial, 15% and 360 ± 250 years, respectively; intertidal, 26% and 470 ± 620 years; subtidal, 39% and 550 ± 630 years). Taking these radiocarbon samples as a proxy for clastic material, our results imply that channel erosion accounted for relatively little clastic removal in the terrestrial and intertidal environments over short timescales, whereas ~ 40% of clastics were removed by storm winnowing and transported in stepwise fashion to deeper water over longer timescales and ~ 60% in the subtidal environment were transported by floods directly from river mouths. These findings imply that radiocarbon ages from reworked samples can be used to quantify clastic recycling processes and their history in coastal areas.

Recruitment, settlement and ontogeny of the serpulid 'Spirobranchus cariniferus' (Gray, 1843)

<p>Serpulids are a globally represented group of polychaetes and can be found in many habitats from the intertidal fringe to the subtidal environment and even in deep-sea ecosystems. These tube-dwelling worms are often described as pioneer species in new or disturbed habitats. Serpulids secrete a calcareous tube and often occur in aggregations. These patches can range from several centimetres to several metres in diameter and may even form reef systems. Accumulations of tube-dwelling worms provide a new habitat for other species and, therefore, serpulids are considered bioengineers. Serpulid aggregations are known to enhance biodiversity and species abundance and may increase water quality through their filter activity. Despite their ecological importance, their ecology and ontogeny have received little attention. Spirobranchus cariniferus, a New Zealand endemic intertidal serpulid, is a substantial contributor to intertidal ecosystems. For this and other Serpulidae, the link between larval development and larval settlement is missing. However, this connection is essential to understand recruitment and ecology of tube-dwelling worms. Therefore, in this thesis, I describe the ontogeny of S. cariniferus from larval development to recruitment and reproduction. In the first data chapter, I present my findings on the recruitment of S. cariniferus in the field. This serpulid settles aggregatively in the field but not necessarily in response to the presence of adult conspecifics, as has been previously reported. Abiotic factors such as sunlight or wave disturbance have a more substantial effect on recruitment rather than the occurrence of adult individuals of the same or a competing species. Additionally, this chapter provides support for the hypothesis that larvae of S. cariniferus may accumulate near the substrate before settlement. Many sessile marine invertebrate taxa occur in either aggregations or as solitary individuals, with potential benefits and disadvantages associated with each configuration. For S. cariniferus, solitary and aggregative individuals can be found in the same habitat. Therefore, the second data chapter compares growth and mortality for individuals living alone or in aggregation. While solitary and aggregative individuals elongate their tubes at a similar rate, further correlations of body to tube sizes lead to the conclusion that solitary worms focus more of their energy on tube length growth rather than body size increment compared to aggregative conspecifics. Mortality is highly variable but does not differ between both configurations. However, individuals living in a patch have a better ability to recover from damage to their tubes. In the last two decades, the idea that gonochorism is the general reproductive pattern for Serpulidae has been challenged, and instead it has been suggested by some that protandry is the more common trait. Therefore, with my third data chapter, I explore maturation and sex ratio of S. cariniferus and whether it changes for individuals living alone vs. in aggregation or based on size. While maturation depends on size, sex does not, and neither maturation nor sex ratio are dependent on whether individuals live in aggregation or not. Further, the ratio of females to males did not favour either sex consistently. For the first time in this species I found evidence of possible hermaphroditism. Through spawning trials and histological sections, I identified nine individuals which simultaneously contained oocytes and sperm cells. I suggest therefore, that S. cariniferus has alternating sexes rather than protandry as a reproductive strategy. In the fourth and final data chapter, I describe the metamorphosis and settlement behaviour of S. cariniferus larvae. For this serpulid species, settlement and metamorphosis are separate and distinct steps that involve both behavioural and morphological changes to the larvae. Further, this entire process can be quite prolonged (i.e. over several days), and at some points can be reversed. It is therefore very important that observations last longer than 24–48 hours, when studying serpulid settlement. As far as I am aware, this is the first study on a serpulid species to examine aggregative settlement in the field in relation to the presence of adult conspecifics and abiotic factors, and also to explicitly test for consequences of solitary vs. group living on growth and mortality. It is also the first to show evidence of hermaphroditism in this species. I hope my research and this thesis stimulates a more inclusive and holistic investigation of serpulids in the future. Larval development, settlement patterns and ontogeny need to be studied in detail if we want to understand the evolution, ecology, impacts and benefits of these and other sessile marine invertebrates.</p>

Recruitment, settlement and ontogeny of the serpulid 'Spirobranchus cariniferus' (Gray, 1843)

<p>Serpulids are a globally represented group of polychaetes and can be found in many habitats from the intertidal fringe to the subtidal environment and even in deep-sea ecosystems. These tube-dwelling worms are often described as pioneer species in new or disturbed habitats. Serpulids secrete a calcareous tube and often occur in aggregations. These patches can range from several centimetres to several metres in diameter and may even form reef systems. Accumulations of tube-dwelling worms provide a new habitat for other species and, therefore, serpulids are considered bioengineers. Serpulid aggregations are known to enhance biodiversity and species abundance and may increase water quality through their filter activity. Despite their ecological importance, their ecology and ontogeny have received little attention. Spirobranchus cariniferus, a New Zealand endemic intertidal serpulid, is a substantial contributor to intertidal ecosystems. For this and other Serpulidae, the link between larval development and larval settlement is missing. However, this connection is essential to understand recruitment and ecology of tube-dwelling worms. Therefore, in this thesis, I describe the ontogeny of S. cariniferus from larval development to recruitment and reproduction. In the first data chapter, I present my findings on the recruitment of S. cariniferus in the field. This serpulid settles aggregatively in the field but not necessarily in response to the presence of adult conspecifics, as has been previously reported. Abiotic factors such as sunlight or wave disturbance have a more substantial effect on recruitment rather than the occurrence of adult individuals of the same or a competing species. Additionally, this chapter provides support for the hypothesis that larvae of S. cariniferus may accumulate near the substrate before settlement. Many sessile marine invertebrate taxa occur in either aggregations or as solitary individuals, with potential benefits and disadvantages associated with each configuration. For S. cariniferus, solitary and aggregative individuals can be found in the same habitat. Therefore, the second data chapter compares growth and mortality for individuals living alone or in aggregation. While solitary and aggregative individuals elongate their tubes at a similar rate, further correlations of body to tube sizes lead to the conclusion that solitary worms focus more of their energy on tube length growth rather than body size increment compared to aggregative conspecifics. Mortality is highly variable but does not differ between both configurations. However, individuals living in a patch have a better ability to recover from damage to their tubes. In the last two decades, the idea that gonochorism is the general reproductive pattern for Serpulidae has been challenged, and instead it has been suggested by some that protandry is the more common trait. Therefore, with my third data chapter, I explore maturation and sex ratio of S. cariniferus and whether it changes for individuals living alone vs. in aggregation or based on size. While maturation depends on size, sex does not, and neither maturation nor sex ratio are dependent on whether individuals live in aggregation or not. Further, the ratio of females to males did not favour either sex consistently. For the first time in this species I found evidence of possible hermaphroditism. Through spawning trials and histological sections, I identified nine individuals which simultaneously contained oocytes and sperm cells. I suggest therefore, that S. cariniferus has alternating sexes rather than protandry as a reproductive strategy. In the fourth and final data chapter, I describe the metamorphosis and settlement behaviour of S. cariniferus larvae. For this serpulid species, settlement and metamorphosis are separate and distinct steps that involve both behavioural and morphological changes to the larvae. Further, this entire process can be quite prolonged (i.e. over several days), and at some points can be reversed. It is therefore very important that observations last longer than 24–48 hours, when studying serpulid settlement. As far as I am aware, this is the first study on a serpulid species to examine aggregative settlement in the field in relation to the presence of adult conspecifics and abiotic factors, and also to explicitly test for consequences of solitary vs. group living on growth and mortality. It is also the first to show evidence of hermaphroditism in this species. I hope my research and this thesis stimulates a more inclusive and holistic investigation of serpulids in the future. Larval development, settlement patterns and ontogeny need to be studied in detail if we want to understand the evolution, ecology, impacts and benefits of these and other sessile marine invertebrates.</p>

Scaling and structural properties of juvenile bull kelp (Nereocystis luetkeana)

Bull kelp (Nereocystis luetkeana), the only canopy-forming kelp in the Salish Sea, provides primary production in the nearshore subtidal environment and serves as important habitat for economically and ecologically important species. An annual species, each year juvenile bull kelp sporophytes must grow from the hydrodynamically more benign benthos to the water column, where they experience substantial drag at the surface. Because of the differences in morphology and ecology across life stages, and the fact that previous work has focused mainly on adult bull kelp, we tested whether morphology and structural properties change with stipe length, investigating scaling of both juvenile (stipe length &lt; 40 cm) and mature (stipe length &gt; 40cm) kelp, and testing how juvenile stipes fail. Juvenile bull kelp grow proportionally (isometric growth) when young, but lengthen more quickly than would be predicted by bulb size (negative allometry) at maturity. Based on our data, the predicted breakpoint between isometric and allometric growth occurred at about 33 cm, likely ∼ one to two weeks of growth. Cross sectional area of the stipe, Force to failure, Work to failure, and stiffness (Young's Modulus) all grow more slowly than would be predicted based on length, while Maximum Stress and Toughness increase more quickly than predicted. There is no change in extensibility over the size range we tested, suggesting that this material property does not change with stipe length. The differences in biomechanics between juvenile and adult kelp are likely a response to the varied hydrodynamic environments experienced during the annual lifecycle, which highlights the importance of studying organisms across life stages.

Effect of depth gradient and temperature on Zostera marina vegetative and reproductive phenology in the first year of the 1997–1998 El Niño

Does Zostera marina exhibit phenotypic plasticity, maximizing fitness in traits responding to environmental factors, i.e., depth and temperature? We compared the vegetative and sexual phenology and reproductive effort of Z. marina by analyzing vegetative and reproductive shoot density, biomass, and reproductive stages to determine structural features of vegetative and reproductive shoots from subtidal and intertidal environments in San Quintín Bay, Baja California, a year before and after the 1997–1998 El Niño/Southern Oscillation (ENSO). We found significant differences in vegetative and reproductive biomass between intertidal and subtidal environments driven by temperature differences between ENSO and non-ENSO years. Subtidal plants had lower density of long reproductive shoots and a shorter reproductive cycle. Seed release occurred from May to October in the subtidal environment, and from May to November in the intertidal environment. Maximal recorded values were 219.5 (±45.8) seeds per reproductive shoot in the subtidal environment and 151.3 (±21.5) in the intertidal environment. We observed higher sexual activity and lower vegetative biomass in the intertidal environment, the most stressful environment. Both vegetative and reproductive biomass were affected by the increase in temperature during ENSO, but vegetative and reproductive shoot densities were not affected.

Crustaceans (Decapoda & Stomatopoda) from Golfo Dulce (Pacific, Costa Rica) in the collection of the Museum of Zoology, University of Costa Rica

Introduction: The availability of recently updated lists of species from a particular area is an important first step to evaluate changes in species composition and abundance. Golfo Dulce is a fjord-like embayment with relatively pristine shores and relatively deep waters (200m) that have been sampled occasionally for crustaceans. Methods: In this study the all species from Golfo Dulce deposited in the collection of the University of Costa Rica Museum of Zoology were listed and scientific names were updated. The MZUCR catalog number, station, substrate type, and year or collection were included for each species. Results: A total of 106 species were listed. Neogonodactylus zacae was present in four of the 19 stations represented in the collections for Golfo Dulce. Nine species were present in three stations, 19 in two stations and the remaining 77 in one station each. The families with most species were Ocypodidae y Palaemonidae (7) and Porcellanidae (14). Conclusions: Is necessary to improve our knowledge of the decapods and stomatopods fauna from Golfo Dulce through further samplings. Intertidal sites such as Golfito and Rincón bays have been poorly sampled as well as intertidal and subtidal environment from the western and eastern shores. However, the fauna is relatively rich when it is related to the area of Golfo Dulce (750km2) and is indicative of a relatively undisturbed environment. Updated management policies are urgently needed and this list of species is a step towards this goal.

Morphology in time and space: how does shape change with sequence stratigraphic architecture?

&lt;p&gt;In their seminal work on stratigraphic paleobiology, Patzkowsky and Holland highlighted the need for more morphological data that are placed within a stratigraphic context in order to more robustly study the impact of environmental change on morphological disparity. The ability to collect morphological data within sequence stratigraphic architecture has been limited by technique. As a result, most morphological data are collected from museum specimens, usually without sequence stratigraphic information. We used the photogrammetry technique, Structure-from-Motion, to collect brachiopod morphological data from outcrops in the Late Ordovician Cincinnati Arch (Indiana, Ohio, Kentucky; USA) and quantify morphological change within an established sequence stratigraphic architecture.&lt;/p&gt;&lt;p&gt;SfM uses 2D photographs taken from different angles to reconstruct a 3D shape. We photographed external valves of brachiopods in the field in 360 degrees (approximately 24 photos per specimen) and used the SfM software &amp;#8216;Agisoft Metashape&amp;#8217; to make 3D models of those specimens. We exported these models into R and used the package &amp;#8216;geomorph&amp;#8217; to generate a set of semi-landmarks. We used these to create a morphospace to explore the effects of environment and time on 3D shape.&lt;/p&gt;&lt;p&gt;Results indicate that brachiopod shells separate in morphospace according to their degree of inflation and roundness. These differences are likely controlled by environmental conditions at each position along a water depth gradient. Additionally, our results are consistent with the previously observed breakdown of the environmental gradient in response to the Richmondian invasion. In particular, for the genera &lt;em&gt;Rafinesquina&lt;/em&gt; and &lt;em&gt;Cincinitina&lt;/em&gt;, pre-invasion specimens inhabit a larger proportion of morphospace, with more specimens exhibiting an ovular outline. Post-invasion specimens contract in morphospace, exhibiting a more rectangular shape. However, &lt;em&gt;Cincinitina&lt;/em&gt; is missing from the offshore environment in the C2 sequence and the deep subtidal environment in the C5 sequence, making it difficult to distinguish the effects of invasion from ecophenotypic variation.&lt;/p&gt;&lt;p&gt;Ultimately, our study demonstrates that SfM makes gathering 3D morphological data from the field possible. Because this is a low-cost and easily accessible method, possibilities of applying it more broadly within paleobiology abound. Further development of this technique will not only provide a better understanding of the distribution of morphological form within stratigraphic architecture, but also increase the quantity of morphological data from key intervals throughout the Phanerozoic. These data can be stored as a digital archive that could facilitate large-scale meta-analyses as well as education and outreach activities.&lt;/p&gt;

Analysis of Quaternary Sediments of Quartz Grains Applied to the Identification of the Environment of Some Ivory Beaches East of Abidjan (Côte d'Ivoire)

Morphoscopic and exoscopic analysis of quartz grains collected on the Ivorian beaches of the gulf of Guinea between Abidjan (Côte d'Ivoire) and Aforenou (Ghana) during topographic surveys between March 2007 and March 2009 on the examination of quartz at the binocular loupe, reveals blunting grains shining on all beaches (50% to 70%). In Abidjan area, the majority of the grains are reddish, indicates a ferrous and inherited environment. The exoscopy for the fine and detailed study of the morphology and the surface of the quartz grains was made with the Scanning Electron Microscope (SEM). This approach makes it possible to interpret traces related to events (energy level) or environments (transport, transition and storage environments). These observations indicate that the quartz after a long transport in a fluvial environment have been reworked in a marine environment. They were finally deposited in a low-energy aquatic continental medium marked by the polishing of the crystalline points and the siliceous corpuscles dotting the surface of the grains. The energy of the transport environments crossed is high in a turbulent environment through traces of shock, as large and numerous as they are. SEM examination of the samples reveals that beach quartz has generally been transported by river and recovered in an intertidal and/or subtidal environment. They have a continental and marine origin.

Late Quaternary Paleoenvironmental Reconstruction, Using Benthic Foraminifera and Ostracoda, of Marine Sedimentary Beds On the Southern Coast of Laizhou Bay, Bohai Sea, China

Extensive studies of Quaternary transgressions have been conducted in Bohai Sea, but debates continue regarding the sedimentary evolution and timing of transgressions, especially in the Pleistocene section. Benthic foraminifers and ostracodes from three boreholes (GK138, GK111, GK95) at Laizhou Bay, Bohai Sea, were utilized to interpret the paleoenvironments of deposition and elucidate the coastal response to global sea-level changes since the late Quaternary. Benthic foraminiferal species identified included 32 species from 15 genera; ostracodes included 28 species from 16 genera. Three marine sedimentary beds were recognized based on sedimentary characteristics, down-core changes in environmental proxies (benthic foraminifers and ostracodes), accelerator mass spectrometry (AMS) 14C, and optically stimulated luminescence (OSL) dates. These three beds were interpreted as: marine sedimentary bed 3 (M3), deposited in the late-middle Pleistocene; marine sedimentary bed 2 (M2), deposited during the late Pleistocene; and marine sedimentary bed 1 (M1), deposited during the Holocene. Three microfossil assemblages were identified, all indicating nearshore conditions. Assemblage III indicated a fluvially influenced or paralic environment during a relatively small-scale late-middle Pleistocene transgression that produced bed M3. Assemblage II indicates an intertidal-subtidal environment where bed M2 was deposited during the late Pleistocene transgression. Assemblage I indicates somewhat more marine influence in a subtidal environment where bed M1 was deposited during the Holocene marine transgression.

An integrated approach to evaluating the suitability of the Potosi Dolomite as a carbon sequestration target

The Cambrian-age Potosi Dolomite of the Knox Group in Illinois is a significant reservoir target for the sequestration of carbon dioxide ([Formula: see text]). The Potosi was originally deposited in a shallow intertidal to subtidal environment and has a major diagenetic overprint of karst processes. There were vuggy intervals (up to 2.1-m [7-ft] thick) present that have caused lost circulation of drilling fluid to occur when penetrating through these intervals. This article used data from Decatur, Illinois, to illustrate a case study of integrating well data, core, and 3D seismic reflection data inversion to create a reservoir model, extrapolating the 3D seismic porosity cube to a larger area beyond the 3D seismic volume and then performing reservoir simulation of [Formula: see text] injection into the Potosi. A waste injection project approximately 64 km (40 mi) to the east suggested that high volumes of [Formula: see text] injection are possible. Project results illustrated that seismic inversion might reduce the uncertainty of the distribution of the lost circulation intervals. The reservoir flow simulation suggested that the Potosi is a viable target for [Formula: see text] sequestration.