Phylogenetic Analysis And Searching Bovine Papillomaviruses In Teat Papillomatosis Cases In Cattle By Histopathological, Immunohistochemical And Transmission Electron Microscopy Methods

Papillomaviruses are epitheliotropic viruses causing proliferations in skin, mucosa and various internal organs in different animal species. Especially due to lesions it causes in teats of cattle, it leads to important economical losses in milk sector. In this study, the aim was to diagnose bovine papillomaviruses (BPVs) causing teat papillomas in cattle by immunohistochemical, transmission electron microscopy (TEM) and molecular methods and to detect the defect on tissues by the virus using histopathological method. In addition to this, sequence analysis of the isolated field strains were to be carried out and their genetic and phylogenetic closeness with the strains within the literature were to be detected. After confirming teat papillomatosis in the collected samples using histopathological and immunohistochemical methods, other diagnosis methods were then used. During the TEM examination of teat lesions, intranuclear virus particles were seen in epithelium cells. After carrying out PCR using degenerate primers and type specific primers, 7 samples were detected as positive for BPV and these samples were used for typing using sequence analysis/PCR with type-specific primers. Within these analysis, three out of seven BPV isolates we collected from infected teat tissues of different cattle were detected as BPV-6, two as BPV-10, one as BPV-2 and one as BPV-8. Five isolates we isolated during sequence analysis of positive samples were found in Xipapillomavirus 1 genus, one in Epsilonpapillomavirus 1 genus and another in Deltapapillomavirus genus. As a result, in molecular diagnosis of BPV that takes place in etiology of teat papillomas, using type specific primers proved to be useful following the usage of genotyping in molecular diagnosis of BPV and generate primers in characterization. Detecting BPV types and their prevalence, taking biosafety measures in animal breeding and giving importance to vaccine studies was considered essential.

One-loop matrix elements of effective superstring interactions: α′-expanding loop integrands

In the low-energy effective action of string theories, non-abelian gauge interactions and supergravity are augmented by infinite towers of higher-mass-dimension operators. We propose a new method to construct one-loop matrix elements with insertions of operators D2kFn and D2kRn in the tree-level effective action of type-I and type-II superstrings. Inspired by ambitwistor string theories, our method is based on forward limits of moduli-space integrals using string tree-level amplitudes with two extra points, expanded in powers of the inverse string tension α′. Similar to one-loop ambitwistor computations, intermediate steps feature non-standard linearized Feynman propagators which eventually recombine to conventional quadratic propagators. With linearized propagators the loop integrand of the matrix elements obey one-loop versions of the monodromy and KLT relations. We express a variety of four- and five-point examples in terms of quadratic propagators and formulate a criterion on the underlying genus-one correlation functions that should make this recombination possible at all orders in α′. The ultraviolet divergences of the one-loop matrix elements are crosschecked against the non-separating degeneration of genus-one integrals in string amplitudes. Conversely, our results can be used as a constructive method to determine degenerations of elliptic multiple zeta values and modular graph forms at arbitrary weight.

Abelian surfaces over totally real fields are potentially modular

We show that abelian surfaces (and consequently curves of genus 2) over totally real fields are potentially modular. As a consequence, we obtain the expected meromorphic continuation and functional equations of their Hasse–Weil zeta functions. We furthermore show the modularity of infinitely many abelian surfaces $A$ A over ${\mathbf {Q}}$ Q with $\operatorname{End}_{ {\mathbf {C}}}A={\mathbf {Z}}$ End C A = Z . We also deduce modularity and potential modularity results for genus one curves over (not necessarily CM) quadratic extensions of totally real fields.

Integrative Descriptions of Two New Mesobiotus Species (Tardigrada, Eutardigrada, Macrobiotidae) from Vietnam

To date, 34 tardigrade taxa have been recorded from Vietnam and this includes only two macrobiotid species belonging to the genus Mesobiotus. In this paper, two additional species of this genus, one of the M. harmsworthi group and one of the M. furciger group, are reported and described as new for science (Mesobiotus imperialis sp. nov., Mesobiotus marmoreus sp. nov.). Both descriptions have an integrative character providing detailed morphological and morphometric data collected by phase contrast and scanning electron microscopy that are linked to genetic data. The latter constitute DNA sequences of molecular markers that are commonly used in tardigrade taxonomy. The genus phylogeny is also provided, elucidating the phylogenetic position of the newly discovered taxa.

Phylogenetic Analysis and Searching Bovine Papillomaviruses in Teat Papillomatosis Cases in Cattle by Histopathological, Immunohistochemical and Transmission Electron Microscopy Methods

Papillomaviruses are epitheliotropic viruses causing proliferations in skin, mucosa and various internal organs in different animal species. Especially due to lesions it causes in teats of cattle, it leads to important economical losses in milk sector. In this study, the aim was to diagnose bovine papillomaviruses (BPVs) causing teat papillomas in cattle by immunohistochemical, transmission electron microscopy (TEM) and molecular methods and to detect the defect on tissues by the virus using histopathological method. In addition to this, sequence analysis of the isolated field strains were to be carried out and their genetic and phylogenetic closeness with the strains within the literature were to be detected. After confirming teat papillomatosis in the collected samples using histopathological and immunohistochemical methods, other diagnosis methods were then used. During the TEM examination of teat lesions, intranuclear virus particles were seen in epithelium cells. After carrying out PCR using degenerate primers and type specific primers, 7 samples were detected as positive for BPV and these samples were used for typing using sequence analysis/PCR with type-specific primers. Within these analysis, three out of seven BPV isolates we collected from infected teat tissues of different cattle were detected as BPV-6, two as BPV-10, one as BPV-2 and one as BPV-8. Five isolates we isolated during sequence analysis of positive samples were found in Xipapillomavirus 1 genus, one in Epsilonpapillomavirus 1 genus and another in Deltapapillomavirus genus. As a result, in molecular diagnosis of BPV that takes place in etiology of teat papillomas, using type specific primers proved to be useful following the usage of genotyping in molecular diagnosis of BPV and generate primers in characterization. Detecting BPV types and their prevalence, taking biosafety measures in animal breeding and giving importance to vaccine studies was considered essential.

Mealybug (Hemiptera: Pseudococcidae) Species Associated with Cacao Mild Mosaic Virus and Evidence of Virus Acquisition

Theobroma cacao is affected by viruses on every continent where the crop is cultivated, with the most well-known ones belonging to the Badnavirus genus. One of these, cacao mild mosaic virus (CaMMV), is present in the Americas, and is transmitted by several species of Pseudococcidae (mealybugs). To determine which species are associated with virus-affected cacao plants in North America, and to assess their potential as vectors, mealybugs (n = 166) were collected from infected trees in Florida, and identified using COI, ITS2, and 28S markers. The species present were Pseudococcus jackbeardsleyi (38%; n = 63), Maconellicoccus hirsutus (34.3%; n = 57), Pseudococcus comstocki (15.7%; n = 26), and Ferrisia virgata (12%; n = 20). Virus acquisition was assessed by testing mealybug DNA (0.8 ng) using a nested PCR that amplified a 500 bp fragment of the movement protein–coat protein region of CaMMV. Virus sequences were obtained from 34.6 to 43.1% of the insects tested; however, acquisition did not differ among species, X2 (3, N = 166) = 0.56, p < 0.91. This study identified two new mealybug species, P. jackbeardsleyi and M. hirsutus, as potential vectors of CaMMV. This information is essential for understanding the infection cycle of CaMMV and developing effective management strategies.

De Novo Whole Genome Assembly of the Roborovski Dwarf Hamster (Phodopus roborovskii) Genome, an Animal Model for Severe/Critical COVID-19

The Roborovski dwarf hamster Phodopus roborovskii belongs to the Phodopus genus, one of seven within Cricetinae subfamily. Like other rodents such as mice, rats or ferrets, hamsters can be important animal models for a range of diseases. Whereas the Syrian hamster from the genus Mesocricetus is now widely used as a model for mild to moderate COVID-19, Roborovski dwarf hamster show a severe to lethal course of disease upon infection with the novel human coronavirus SARS-CoV-2.

The Prime Function, the Fay Trisecant Identity, and the van der Pauw Method

The van der Pauw method is a well-known experimental technique in the applied sciences for measuring physical quantities such as the electrical conductivity or the Hall coefficient of a given sample. Its popularity is attributable to its flexibility: the same method works for planar samples of any shape provided they are simply connected. Mathematically, the method is based on the cross-ratio identity. Much recent work has been done by applied scientists attempting to extend the van der Pauw method to samples with holes (“holey samples”). In this article we show the relevance of two new function theoretic ingredients to this area of application: the prime function associated with the Schottky double of a multiply connected planar domain and the Fay trisecant identity involving that prime function. We focus here on the single-hole (doubly connected, or genus one) case. Using these new theoretical ingredients we are able to prove several mathematical conjectures put forward in the applied science literature.