scholarly journals A role for indels in the evolution of Cro protein folds

2013 ◽  
Vol 81 (11) ◽  
pp. 1988-1996 ◽  
Author(s):  
Katie L. Stewart ◽  
Michael R. Nelson ◽  
Karen V. Eaton ◽  
William J. Anderson ◽  
Matthew H. J. Cordes
Keyword(s):  
Protein Folds ◽  
Cro Protein

scholarly journals Evolutionary bridges to new protein folds: design of C-terminal Cro protein chameleon sequences

2011 ◽  
Vol 24 (9) ◽  
pp. 765-771 ◽  
Author(s):  
W. J. Anderson ◽  
L. O. Van Dorn ◽  
W. M. Ingram ◽  
M. H. J. Cordes
Keyword(s):  
Protein Folds ◽  
Cro Protein ◽  
New Protein

Protein Folds Prediction with Hierarchical Structured SVM

2016 ◽  
Vol 13 (2) ◽  
pp. 79-85 ◽  
Author(s):  
Dapeng Li ◽  
Ying Ju ◽  
Quan Zou
Keyword(s):  
Protein Folds

Protein folds recognized by an intelligent predictor based-on evolutionary and structural information

2015 ◽  
Vol 37 (4) ◽  
pp. 426-436 ◽  
Author(s):  
Ngaam J. Cheung ◽  
Xue-Ming Ding ◽  
Hong-Bin Shen
Keyword(s):  
Structural Information ◽  
Protein Folds

FRAN and RBF-PSO as two components of a hyper framework to recognize protein folds

2013 ◽  
Vol 43 (9) ◽  
pp. 1182-1191 ◽  
Author(s):  
Elham Abbasi ◽  
Mehdi Ghatee ◽  
M.E. Shiri
Keyword(s):  
Protein Folds

scholarly journals Sialidase-like Asp-boxes: Sequence-similar structures within different protein folds

2001 ◽  
Vol 10 (2) ◽  
pp. 285-292 ◽  
Author(s):  
Richard R. Copley ◽  
Robert B. Russell ◽  
Chris P. Ponting
Keyword(s):  
Protein Folds

scholarly journals Protein folds and functions

Structure ◽  
1998 ◽  
Vol 6 (7) ◽  
pp. 875-884 ◽  
Author(s):  
Andrew CR Martin ◽  
Christine A Orengo ◽  
E Gail Hutchinson ◽  
Susan Jones ◽  
Maria Karmirantzou ◽  
...  
Keyword(s):  
Protein Folds

scholarly journals Phage lambda Cro protein and cI repressor use two different patterns of specific protein-DNA interactions to achieve sequence specificity in vivo.

Genetics ◽  
1989 ◽  
Vol 121 (1) ◽  
pp. 5-12
Author(s):  
N Benson ◽  
P Youderian
Keyword(s):  
Specific Protein ◽  
Specific Interactions ◽  
Sequence Specificity ◽  
Base Pairs ◽  
Lambda Repressor ◽  
Protein Dna Interactions ◽  
Cro Protein ◽  
Data Call ◽  
Half Site

Abstract By assaying the binding of wild-type Cro to a set of 40 mutant lambda operators in vivo, we have determined that the 14 outermost base pairs of the 17 base pair, consensus lambda operator are critical for Cro binding. Cro protein recognizes 4 base pairs in a lambda operator half-site in different ways than cI repressor. The sequence determinants of Cro binding at these critical positions in vivo are nearly perfectly consistent with the model proposed by W. F. ANDERSON, D. H. OHLENDORF, Y. TAKEDA and B. W. MATTHEWS and modified by Y. TAKEDA, A. SARAI and V. M. RIVERA for the specific interactions between Cro and its operator, and explain the relative order of affinities of the six natural lambda operators for Cro. Our data call into question the idea that lambda repressor and Cro protein recognize the consensus lambda operator by nearly identical patterns of specific interactions.

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